Rmu_sc0002406.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002406.1
OG0000492
Physical Location & Seq
Forward (+)
47454 .. 47795
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002406.1_g000011.1.cds

Sequence Viewer

Length: 342 bp
atggggatactagatacaagacagttgattctcaaaggtatgcgattgattgtaggaaatagaagggatataaagttttggacttttaactgggctttggatcatcccttaataagttacatcccacaagaaaggaggcattcaatcaacatcgaagaaactgtgggggattacatcatcaatggagcttggaacaggaataaactggcttctgttctgaacaaccctattgttaaccagattatgggaattcccattccaatttcagaacagcaggataagtacatttggggtccggcagctcaaggtaagtattctattaagtccgccacttcgctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

113

Amino Acids

12.95

Weight (kDa)

9.63

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 144
AluBI AGCT 2 cut(s) 188, 302
AluI AGCT 2 cut(s) 188, 302
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 293
AvaII GGWCC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 311
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 95, 210
BseGI GGATG 2 cut(s) 103, 120
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 95, 210
BseXI GCAGC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 244
BsmI GAATGC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 95, 210
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 24, 163
BstF5I GGATG 2 cut(s) 103, 120
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 103, 120
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 283
CviJI RGCY 4 cut(s) 95, 188, 209, 302
CviKI_1 RGCY 4 cut(s) 95, 188, 209, 302
CviQI GTAC 1 cut(s) 283
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 249
FaiI YATR 4 cut(s) 41, 71, 245, 340
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 2 cut(s) 90, 107
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 300
HapII CCGG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 28
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 219, 268
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 24, 163
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 76, 181, 191, 251, 260, 309
Lsp1109I GCAGC 1 cut(s) 311
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 167
MluCI AATT 2 cut(s) 249, 261
MnlI CCTC 1 cut(s) 129
MseI TTAA 4 cut(s) 87, 110, 234, 321
MspI CCGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 139
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 294
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 4 cut(s) 87, 110, 234, 321
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 293
SetI ASST 4 cut(s) 40, 190, 304, 310
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 2 cut(s) 249, 261
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 24, 163
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 249, 261
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 4 cut(s) 87, 110, 234, 321
Tru9I TTAA 4 cut(s) 87, 110, 234, 321
TseI GCWGC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 249
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.