Rh1AG352100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000492
Physical Location & Seq
Reverse (-)
58818609 .. 58819001
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG352100.1

Sequence Viewer

Length: 393 bp
ATGGAATTGGTAACCTCAGTCTCTTTCTCAATCAATATCAATGGAAAGCAAGGCCAATATTTCATCCCTTCTAGAGTTTTAAGACAGGGGGACCCTCTATCCCCCTATCTCTTCCTGATTGTAGGAGAAGTGCTCTCAAGAAATATATTTGCAGCCATCTCAAACAATCATCTTCATGTTATAGTCCCTGGTAAGCCGTTGGCCAGTTTTTCCACCTTCTTTCCTCACTTAGCCGGTGATTTTTTCATAGGCGAAGGTTTCACAACTTTGATCTCCTTCACTTTGTTCTTTGCACCGTTGGGTCTTAACCGTTTCTTTGTCTCACCTTGCACCAACTGTGATGGACACAAACCCATCGAAATAGCATCCAAGTTTGGTACGTCCAATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

7.86

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 201
AfaI GTAC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 25, 325
AoxI GGCC 2 cut(s) 52, 201
ApeKI GCWGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 248, 315
AvaII GGWCC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 164, 335, 362
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 2 cut(s) 25, 325
BfaI CTAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 92, 93
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpuEI CTTGAG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 63, 365
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 2 cut(s) 54, 203
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 104, 170
BsmAI GTCTC 2 cut(s) 25, 325
BsmFI GGGAC 2 cut(s) 104, 170
BsnI GGCC 2 cut(s) 54, 203
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 2 cut(s) 54, 203
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 92, 93
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 297, 311, 338
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 16, 229
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 63, 365
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 25, 325
BstMBI GATC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 164
BsuRI GGCC 2 cut(s) 54, 203
BtsCI GGATG 2 cut(s) 63, 365
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 378
CviAII CATG 1 cut(s) 176
CviJI RGCY 6 cut(s) 54, 155, 196, 203, 233, 390
CviKI_1 RGCY 6 cut(s) 54, 155, 196, 203, 233, 390
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 16, 229
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 91
Eco91I GGTNACC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 146, 177, 182, 248
FaqI GGGAC 2 cut(s) 104, 170
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 50, 352
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 2 cut(s) 54, 203
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 179
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 248, 315
Hpy188III TCNNGA 3 cut(s) 72, 115, 138
HpyAV CCTTC 4 cut(s) 78, 226, 248, 286
HpyCH4III ACNGT 3 cut(s) 297, 311, 338
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 152, 293, 330
HpyF3I CTNAG 2 cut(s) 16, 229
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 179
KflI GGGWCCC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 6 cut(s) 71, 128, 174, 201, 217, 247
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 2 cut(s) 103, 164
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 203
MnlI CCTC 3 cut(s) 25, 105, 234
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
MseI TTAA 2 cut(s) 80, 306
MslI CAYNNNNRTG 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 203
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 2 cut(s) 92, 93
PkrI GCNGC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 187
PspEI GGTNACC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 92, 93
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 80, 306
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 17, 218, 259, 328, 383
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 1 cut(s) 5
SspI AATATT 1 cut(s) 59
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 3 cut(s) 297, 311, 338
TaiI ACGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 357
TasI AATT 1 cut(s) 5
Tru1I TTAA 2 cut(s) 80, 306
Tru9I TTAA 2 cut(s) 80, 306
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 52, 164, 235
VpaK11BI GGWCC 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 71
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.