Prupe.1G210400_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000492
Physical Location & Seq
Reverse (-)
22394999 .. 22395241
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G210400.1

Sequence Viewer

Length: 243 bp
ATGGGTTTTGCTAGTGCTTGGGTCCAAATGGTTATGAGCTGCATCACTTCGGTAGAATTTGTGGTTCTTATCAACTGCAAGAAGGGTAATAGTTTTAAACCCTTAAGAGGCCTGAGACAGAGGGATCCCATTTCCCCATATCTATTTATTATTATAACTGATGTGCTATTAACTATGATAAACTGTGTTGTGAGCATAGGCCTTCTTCAAGGAATAAAATTCAATAGGGAGGGTCTAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

81

Amino Acids

8.94

Weight (kDa)

9.35

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AclWI GGATC 2 cut(s) 119, 132
AcsI RAATTY 2 cut(s) 56, 218
AfiI CCNNNNNNNGG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 209, 223
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 2 cut(s) 119, 132
AoxI GGCC 2 cut(s) 109, 199
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 2 cut(s) 56, 218
AspS9I GGNCC 1 cut(s) 22
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 23, 126
BmsI GCATC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 111, 201
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 111, 201
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 2 cut(s) 111, 201
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 23, 126
BspPI GGATC 2 cut(s) 119, 132
BspTI CTTAAG 1 cut(s) 103
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 113
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 111, 201
Cfr13I GGNCC 1 cut(s) 22
CviJI RGCY 3 cut(s) 39, 111, 201
CviKI_1 RGCY 3 cut(s) 39, 111, 201
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 97
Eco147I AGGCCT 2 cut(s) 111, 201
Eco47I GGWCC 1 cut(s) 22
FaiI YATR 5 cut(s) 35, 139, 155, 176, 197
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 111, 201
HpyAV CCTTC 2 cut(s) 76, 212
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 42, 78
HpyF3I CTNAG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 56, 218
MnlI CCTC 3 cut(s) 101, 114, 223
MseI TTAA 3 cut(s) 96, 104, 170
MspCI CTTAAG 1 cut(s) 103
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 23, 126
PceI AGGCCT 2 cut(s) 111, 201
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 23, 126
PspPI GGNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 124
SaqAI TTAA 3 cut(s) 96, 104, 170
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 22
SetI ASST 2 cut(s) 41, 242
SfaNI GCATC 1 cut(s) 51
SgeI CNNG 5 cut(s) 24, 30, 91, 124, 221
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 56, 218
SseBI AGGCCT 2 cut(s) 111, 201
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 2 cut(s) 111, 201
TaaI ACNGT 1 cut(s) 185
TasI AATT 2 cut(s) 56, 218
Tru1I TTAA 3 cut(s) 96, 104, 170
Tru9I TTAA 3 cut(s) 96, 104, 170
TseI GCWGC 1 cut(s) 39
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 2 cut(s) 56, 218
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.