RchiOBHm_Chr7g0229871

ribonuclease H protein At1g65750

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000492
Physical Location & Seq
Forward (+)
53376160 .. 53376802
643 bp
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UTR
Exon/CDS
Intron
PRQ20595

Sequence Viewer

Length: 162 bp
ATGTTTACAGATAATTGTGTGTTAGTTTATGATTTACTTTTATCAAAACTAGGTGTTCAGCTAGAAAGTGCTTGGCTTGTGGTATTGGGGAAGATGAATACTTGTGATGTCCTTCAAAAGAAAAGACCGGGAAGTTGTTCTTCTCCTCACTGGTGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

53

Amino Acids

5.94

Weight (kDa)

7.66

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 2 cut(s) 50, 62
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 148
CviJI RGCY 2 cut(s) 61, 76
CviKI_1 RGCY 2 cut(s) 61, 76
FaiI YATR 1 cut(s) 30
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FspBI CTAG 2 cut(s) 50, 62
HapII CCGG 1 cut(s) 128
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 156
LpnPI CCDG 2 cut(s) 136, 141
MaeI CTAG 2 cut(s) 50, 62
MboII GAAGA 2 cut(s) 103, 132
MluCI AATT 1 cut(s) 13
MnlI CCTC 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 136
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 129
NciI CCSGG 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 129
SetI ASST 2 cut(s) 55, 63
SgeI CNNG 7 cut(s) 62, 74, 84, 89, 114, 140, 141
Sse9I AATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 50, 62
StyD4I CCNGG 1 cut(s) 127
TasI AATT 1 cut(s) 13
TscAI CASTG 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 2 cut(s) 50, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.