Rmu_sc0000693.1_g000082

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000492
Physical Location & Seq
Forward (+)
401002 .. 405048
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000082.1.cds

Sequence Viewer

Length: 1173 bp
atgtttggctccaattttgttgcagctggtcaacagtctcttttctgctcgggcatgccagcaccgttcgggtgcggtcgtcggggattgagcagagcgaaatcactgggaagtgttgagattttgctaaagcgtgactttagcttggctgggttgctagggcgttacccttgcttagctggttccgtaaccgttgtggtcgcggcactaccgtcggctcccgaggagactaggaccgaagttactgatcagaaaatctggaatgcggttaactccattggggctttaaaagctcctgcaccggatggtctgcatgcaatcttttatcaaacttgctggaatgaagtacgtgaccccgtgatcaagttagtcaggactttcttcagtaatgatgactgtcttatttttggtaaagcttctatcaaatctgctagaaacattgtttctattcttaatgatttctctgctgcctctgggcagaaaatcaattatcataaatcctctacttatctctcacctagggtactagcttctttgaaacaggatatcactggcattctcaatatacaacacaaggaaaccattggtaagtatcatggaatacataatgttatattttggaagaacccgataaatgcaaaggaacttctcctcaaaatggcaggtaaacttagtggttggaagaaaggtactccttctagggctagtagattaaccttgattaaatataatctcgctagcatgcctaatcatgttaaaaagaagcagtctggctctttggcttggaagggaattttggacagcagagatctggaactcaaaggaatgagatggattgtggggagtggtagaactattaacttctggacttttaactgggccttcgatttcccactgggtaacctattaaatgatacgcagaaagctcacatcaactgggaagagacagttgctgattacatcactgaagtgccaagtactgttatgtcagcctcacaagctgtcctacagacgtcggataacgctatgcaagcttcaacaccgagctgctccaaccaaccaccacttaacattcgctggcatcctcctccgcaaaatacaatcaagataaactttgatggatatttaaatcaggcgctgctgcctcgggcttcatcttcaaagatcacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

390

Amino Acids

42.91

Weight (kDa)

9.71

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1016
Acc36I ACCTGC 1 cut(s) 653
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 75, 203, 266, 1091
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 2 cut(s) 367, 987
AcyI GRCGYC 1 cut(s) 1013
AfaI GTAC 4 cut(s) 348, 525, 691, 979
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 3 cut(s) 538, 1038, 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AleI CACNNNNGTG 1 cut(s) 968
Alw26I GTCTC 3 cut(s) 42, 221, 938
AlwNI CAGNNNCTG 2 cut(s) 953, 1138
Ama87I CYCGRG 3 cut(s) 49, 221, 1146
AoxI GGCC 1 cut(s) 879
ApeKI GCWGC 5 cut(s) 23, 467, 1047, 1138, 1141
ApoI RAATTY 1 cut(s) 792
AspA2I CCTAGG 1 cut(s) 518
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 2 cut(s) 234, 879
AsuHPI GGTGA 2 cut(s) 507, 1159
AsuNHI GCTAGC 1 cut(s) 737
AvaI CYCGRG 3 cut(s) 49, 221, 1146
AvaII GGWCC 1 cut(s) 234
AvrII CCTAGG 1 cut(s) 518
BbvI GCAGC 5 cut(s) 35, 454, 1034, 1125, 1128
BccI CCATC 3 cut(s) 299, 825, 1112
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BclI TGATCA 2 cut(s) 247, 360
BcoDI GTCTC 3 cut(s) 42, 221, 938
BfaI CTAG 9 cut(s) 158, 231, 432, 519, 527, 699, 705, 738, 1171
BfmI CTRYAG 1 cut(s) 1007
BfoI RGCGCY 1 cut(s) 1139
BfuAI ACCTGC 1 cut(s) 653
BglII AGATCT 1 cut(s) 808
BisI GCNGC 6 cut(s) 24, 204, 468, 1048, 1139, 1142
BlnI CCTAGG 1 cut(s) 518
BlpI GCTNAGC 1 cut(s) 175
BlsI GCNGC 6 cut(s) 25, 205, 469, 1049, 1140, 1143
BmcAI AGTACT 1 cut(s) 979
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 3 cut(s) 49, 221, 1146
BmgT120I GGNCC 2 cut(s) 234, 879
BmiI GGNNCC 3 cut(s) 10, 184, 219
BmrI ACTGGG 4 cut(s) 116, 886, 905, 946
BmsI GCATC 1 cut(s) 1090
BmtI GCTAGC 1 cut(s) 741
BmuI ACTGGG 4 cut(s) 116, 886, 905, 946
Bpu1102I GCTNAGC 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 1013
BsaJI CCNNGG 3 cut(s) 222, 518, 1145
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse1I ACTGG 5 cut(s) 111, 556, 881, 900, 941
BseDI CCNNGG 3 cut(s) 222, 518, 1145
BseGI GGATG 2 cut(s) 310, 1081
BseLI CCNNNNNNNGG 1 cut(s) 658
BseNI ACTGG 5 cut(s) 111, 556, 881, 900, 941
BseRI GAGGAG 3 cut(s) 239, 641, 1077
BseXI GCAGC 5 cut(s) 35, 454, 1034, 1125, 1128
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 881
BsiEI CGRYCG 1 cut(s) 79
BsiHKCI CYCGRG 3 cut(s) 49, 221, 1146
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 3 cut(s) 42, 221, 938
BsmI GAATGC 2 cut(s) 268, 555
BsnI GGCC 1 cut(s) 881
BsoBI CYCGRG 3 cut(s) 49, 221, 1146
Bsp143I GATC 4 cut(s) 247, 360, 808, 1164
Bsp1720I GCTNAGC 1 cut(s) 175
BspACI CCGC 4 cut(s) 75, 203, 266, 1091
BspANI GGCC 1 cut(s) 881
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 10, 184, 219
BspMI ACCTGC 1 cut(s) 653
BspOI GCTAGC 1 cut(s) 741
BsrI ACTGG 5 cut(s) 111, 556, 881, 900, 941
BssECI CCNNGG 3 cut(s) 222, 518, 1145
BssMI GATC 4 cut(s) 247, 360, 808, 1164
BssNI GRCGYC 1 cut(s) 1013
BssT1I CCWWGG 1 cut(s) 518
Bst4CI ACNGT 7 cut(s) 36, 66, 193, 213, 398, 949, 982
Bst6I CTCTTC 1 cut(s) 936
BstACI GRCGYC 1 cut(s) 1013
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 7 cut(s) 56, 60, 315, 739, 743, 1032, 1079
BstDEI CTNAG 2 cut(s) 175, 671
BstEII GGTNACC 1 cut(s) 899
BstF5I GGATG 2 cut(s) 310, 1081
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 1139
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 4 cut(s) 250, 363, 811, 1167
BstMAI GTCTC 3 cut(s) 42, 221, 938
BstMBI GATC 4 cut(s) 247, 360, 808, 1164
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 290, 998, 1031
BstNSI RCATGY 3 cut(s) 58, 317, 745
BstPI GGTNACC 1 cut(s) 899
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 5 cut(s) 35, 454, 1034, 1125, 1128
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
BsuRI GGCC 1 cut(s) 881
BtsCI GGATG 2 cut(s) 310, 1081
BtsIMutI CAGTG 4 cut(s) 104, 549, 893, 963
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 7 cut(s) 56, 60, 315, 739, 743, 1032, 1079
CaiI CAGNNNCTG 2 cut(s) 953, 1138
CfoI GCGC 1 cut(s) 1138
Cfr13I GGNCC 2 cut(s) 234, 879
Csp6I GTAC 4 cut(s) 347, 524, 690, 978
CviAII CATG 5 cut(s) 55, 314, 596, 742, 752
CviQI GTAC 4 cut(s) 347, 524, 690, 978
DdeI CTNAG 2 cut(s) 175, 671
DpnI GATC 4 cut(s) 249, 362, 810, 1166
DpnII GATC 4 cut(s) 247, 360, 808, 1164
DraI TTTAAA 2 cut(s) 288, 1128
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 518
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 367, 987
Eco88I CYCGRG 3 cut(s) 49, 221, 1146
Eco91I GGTNACC 1 cut(s) 899
EcoO65I GGTNACC 1 cut(s) 899
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 5 cut(s) 58, 317, 599, 745, 755
FalI AAGNNNNNCTT 4 cut(s) 122, 154, 1097, 1129
FatI CATG 5 cut(s) 54, 313, 595, 741, 751
FbaI TGATCA 2 cut(s) 247, 360
Fnu4HI GCNGC 6 cut(s) 24, 204, 468, 1048, 1139, 1142
FokI GGATG 2 cut(s) 317, 1068
Fsp4HI GCNGC 6 cut(s) 24, 204, 468, 1048, 1139, 1142
FspBI CTAG 9 cut(s) 158, 231, 432, 519, 527, 699, 705, 738, 1171
GlaI GCGC 1 cut(s) 1137
GluI GCNGC 6 cut(s) 24, 204, 468, 1048, 1139, 1142
GsaI CCCAGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 1139
HaeIII GGCC 1 cut(s) 881
HapII CCGG 1 cut(s) 302
HhaI GCGC 1 cut(s) 1138
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 5 cut(s) 58, 317, 599, 745, 755
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HincII GTYRAC 2 cut(s) 32, 271
HindII GTYRAC 2 cut(s) 32, 271
HindIII AAGCTT 2 cut(s) 414, 1032
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 507, 1159
Hpy166II GTNNAC 3 cut(s) 32, 271, 668
Hpy188I TCNGA 2 cut(s) 252, 1018
Hpy188III TCNNGA 6 cut(s) 221, 259, 373, 812, 865, 1105
Hpy8I GTNNAC 3 cut(s) 32, 271, 668
Hpy99I CGWCG 3 cut(s) 84, 217, 1018
HpyAV CCTTC 3 cut(s) 705, 781, 892
HpyCH4III ACNGT 7 cut(s) 36, 66, 193, 213, 398, 949, 982
HpyCH4IV ACGT 2 cut(s) 349, 1013
HpyCH4V TGCA 6 cut(s) 23, 299, 313, 317, 638, 1030
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 998, 1031
HpyF3I CTNAG 2 cut(s) 175, 671
HpySE526I ACGT 2 cut(s) 349, 1013
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 5 cut(s) 58, 317, 599, 745, 755
HspAI GCGC 1 cut(s) 1136
Ksp22I TGATCA 2 cut(s) 247, 360
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 4 cut(s) 247, 360, 808, 1164
LmnI GCTCC 4 cut(s) 14, 223, 298, 1055
Lsp1109I GCAGC 5 cut(s) 35, 454, 1034, 1125, 1128
LweI GCATC 1 cut(s) 1090
MaeI CTAG 9 cut(s) 158, 231, 432, 519, 527, 699, 705, 738, 1171
MaeII ACGT 2 cut(s) 349, 1013
MaeIII GTNAC 6 cut(s) 134, 164, 187, 241, 350, 899
MalI GATC 4 cut(s) 249, 362, 810, 1166
MboI GATC 4 cut(s) 247, 360, 808, 1164
MboII GAAGA 5 cut(s) 373, 634, 694, 953, 1149
MflI RGATCY 1 cut(s) 808
MluCI AATT 3 cut(s) 13, 487, 792
MmeI TCCRAC 3 cut(s) 659, 996, 1077
MnlI CCTC 8 cut(s) 217, 481, 511, 662, 1003, 1095, 1098, 1155
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 302
Mva1269I GAATGC 2 cut(s) 268, 555
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 290, 998, 1031
NdeII GATC 4 cut(s) 247, 360, 808, 1164
NheI GCTAGC 1 cut(s) 737
NlaIII CATG 5 cut(s) 58, 317, 599, 745, 755
NlaIV GGNNCC 3 cut(s) 10, 184, 219
NmuCI GTSAC 2 cut(s) 134, 350
NspI RCATGY 3 cut(s) 58, 317, 745
OliI CACNNNNGTG 1 cut(s) 968
PaeI GCATGC 3 cut(s) 58, 317, 745
PctI GAATGC 2 cut(s) 268, 555
PkrI GCNGC 6 cut(s) 25, 205, 469, 1049, 1140, 1143
Ppu21I YACGTR 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 899
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 10, 184, 219
PspPI GGNCC 2 cut(s) 234, 879
PstNI CAGNNNCTG 2 cut(s) 953, 1138
PsuI RGATCY 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 4 cut(s) 348, 525, 691, 979
RsaNI GTAC 4 cut(s) 347, 524, 690, 978
RseI CAYNNNNRTG 1 cut(s) 968
SatI GCNGC 6 cut(s) 24, 204, 468, 1048, 1139, 1142
Sau3AI GATC 4 cut(s) 247, 360, 808, 1164
Sau96I GGNCC 2 cut(s) 234, 879
ScaI AGTACT 1 cut(s) 979
SfaNI GCATC 1 cut(s) 1090
SfcI CTRYAG 1 cut(s) 1007
SinI GGWCC 1 cut(s) 234
SmiI ATTTAAAT 1 cut(s) 1128
SmiMI CAYNNNNRTG 1 cut(s) 968
SphI GCATGC 3 cut(s) 58, 317, 745
Sse9I AATT 3 cut(s) 13, 487, 792
SsiI CCGC 4 cut(s) 75, 203, 266, 1091
SspMI CTAG 9 cut(s) 158, 231, 432, 519, 527, 699, 705, 738, 1171
StyI CCWWGG 1 cut(s) 518
SwaI ATTTAAAT 1 cut(s) 1128
TaaI ACNGT 7 cut(s) 36, 66, 193, 213, 398, 949, 982
TaiI ACGT 2 cut(s) 352, 1016
TaqI TCGA 1 cut(s) 885
TaqII GACCGA 1 cut(s) 251
TasI AATT 3 cut(s) 13, 487, 792
TatI WGTACW 1 cut(s) 977
TauI GCSGC 1 cut(s) 206
TscAI CASTG 4 cut(s) 111, 556, 900, 970
TseFI GTSAC 2 cut(s) 134, 350
TseI GCWGC 5 cut(s) 23, 467, 1047, 1138, 1141
Tsp45I GTSAC 2 cut(s) 134, 350
TspDTI ATGAA 2 cut(s) 357, 1143
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 4 cut(s) 111, 556, 900, 970
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 792
XceI RCATGY 3 cut(s) 58, 317, 745
XmaJI CCTAGG 1 cut(s) 518
XspI CTAG 9 cut(s) 158, 231, 432, 519, 527, 699, 705, 738, 1171
ZraI GACGTC 1 cut(s) 1014
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.