Rmu_ssc0000368.1_g000056

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000368.1
OG0000492
Physical Location & Seq
Reverse (-)
268306 .. 268956
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000368.1_g000056.1.cds

Sequence Viewer

Length: 651 bp
atgagacaaaagtatttaagaagcgcatccttcttccaggcaaggaagaagcaatcccactcgtttgcttggaaaggggtcttggtaactcgagatctaattatgaaaggaataaaatcgatactaggaaatggccaaacgataaacttttggactttcaactgggtttttgatcatccgttgcatttatatgttgcggaggatcagaagcaactcatcaattggaacgaaacagtggaggattacataagcaacaacacctggcacagaggtaagctttctcaactacttgagcagcatattgtaaaccaaatagcaggagtccctattcctacttctgaacaggaagatgagtttgtttggggaccttcctcaaatgggctcttcaccattaaatcagccacttggctccagcttaatcacaaggaaaaacatagccaaataaccctattaacaaaaatgtggaaactcaatgttccacctaaaattaaaatgtttgcttggcttctcattagaggcagactcaaaacaagagatagactgaccatgtttggtgtagtactggataactcttgccctttatgtaatactgacaatgaaacaacagatcatctcttcggatactgcagctttgctacggaagtctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

216

Amino Acids

25.26

Weight (kDa)

9.26

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 133
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 36, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 277, 415, 630
AluI AGCT 3 cut(s) 277, 415, 630
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 295, 627
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 307, 639
BciT130I CCWGG 2 cut(s) 38, 262
BciVI GTATCC 1 cut(s) 614
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 625
BfuI GTATCC 1 cut(s) 614
BglII AGATCT 1 cut(s) 94
BisI GCNGC 2 cut(s) 296, 628
BlsI GCNGC 2 cut(s) 297, 629
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 38, 262
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 366, 410
BmrFI CCNGG 2 cut(s) 38, 262
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 167, 567
BseBI CCWGG 2 cut(s) 38, 262
BseCI ATCGAT 1 cut(s) 119
BseGI GGATG 2 cut(s) 26, 175
BseLI CCNNNNNNNGG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 167, 567
BseXI GCAGC 2 cut(s) 307, 639
BshFI GGCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 308, 378
BslI CCNNNNNNNGG 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 308, 378
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 4 cut(s) 94, 172, 202, 607
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 366, 410
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 389
BsrI ACTGG 2 cut(s) 167, 567
BssMI GATC 4 cut(s) 94, 172, 202, 607
Bst2UI CCWGG 2 cut(s) 38, 262
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 389, 620
BstF5I GGATG 2 cut(s) 26, 175
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 4 cut(s) 97, 175, 205, 610
BstMBI GATC 4 cut(s) 94, 172, 202, 607
BstNI CCWGG 2 cut(s) 38, 262
BstSCI CCNGG 2 cut(s) 36, 260
BstSFI CTRYAG 1 cut(s) 625
BstV1I GCAGC 2 cut(s) 307, 639
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 119
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 119
BtsCI GGATG 2 cut(s) 26, 175
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 1 cut(s) 560
CviAII CATG 1 cut(s) 547
CviJI RGCY 9 cut(s) 135, 277, 382, 401, 409, 415, 438, 505, 630
CviKI_1 RGCY 9 cut(s) 135, 277, 382, 401, 409, 415, 438, 505, 630
CviQI GTAC 1 cut(s) 560
DpnI GATC 4 cut(s) 96, 174, 204, 609
DpnII GATC 4 cut(s) 94, 172, 202, 607
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 389, 620
EarI CTCTTC 2 cut(s) 389, 620
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 36, 260
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 1 cut(s) 550
FaiI YATR 8 cut(s) 104, 190, 192, 248, 300, 435, 548, 583
FaqI GGGAC 2 cut(s) 308, 378
FatI CATG 1 cut(s) 546
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 296, 628
FokI GGATG 2 cut(s) 13, 162
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 296, 628
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 296, 628
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 1 cut(s) 135
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 321, 522
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 207, 340, 620
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 40, 378
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 184, 627
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 94, 172, 202, 607
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 307, 639
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 85
MalI GATC 4 cut(s) 96, 174, 204, 609
MboI GATC 4 cut(s) 94, 172, 202, 607
MboII GAAGA 5 cut(s) 25, 58, 359, 376, 607
MfeI CAATTG 1 cut(s) 220
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 384
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 3 cut(s) 99, 220, 486
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 2 cut(s) 330, 516
MnlI CCTC 5 cut(s) 193, 232, 263, 382, 509
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
MseI TTAA 5 cut(s) 17, 393, 417, 452, 489
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 38, 262
MunI CAATTG 1 cut(s) 220
MvaI CCWGG 2 cut(s) 38, 262
NdeII GATC 4 cut(s) 94, 172, 202, 607
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 366, 410
PaeR7I CTCGAG 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 389
PkrI GCNGC 2 cut(s) 297, 629
PleI GAGTC 2 cut(s) 329, 516
PpsI GAGTC 2 cut(s) 329, 516
PpuMI RGGWCCY 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 36, 260
PspGI CCWGG 2 cut(s) 36, 260
PspN4I GGNNCC 2 cut(s) 366, 410
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PstI CTGCAG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 5 cut(s) 17, 393, 417, 452, 489
SatI GCNGC 2 cut(s) 296, 628
Sau3AI GATC 4 cut(s) 94, 172, 202, 607
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 330, 516
ScrFI CCNGG 2 cut(s) 38, 262
SduI GDGCHC 1 cut(s) 384
SetI ASST 7 cut(s) 263, 274, 279, 370, 417, 484, 632
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 625
Sfr274I CTCGAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 90, 290
SmoI CTYRAG 2 cut(s) 90, 290
Sse9I AATT 3 cut(s) 99, 220, 486
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 36, 260
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 91, 119
TasI AATT 3 cut(s) 99, 220, 486
TatI WGTACW 1 cut(s) 559
Tru1I TTAA 5 cut(s) 17, 393, 417, 452, 489
Tru9I TTAA 5 cut(s) 17, 393, 417, 452, 489
TscAI CASTG 1 cut(s) 240
TseI GCWGC 2 cut(s) 295, 627
TspDTI ATGAA 2 cut(s) 119, 612
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 90
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.