RchiOBHm_Chr6g0301391

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000492
Physical Location & Seq
Reverse (-)
61803406 .. 61804501
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27069

Sequence Viewer

Length: 996 bp
ATGAGGAATTTCTTTTGGGGTAGCTCTTCTACCTCTCCTCCGGTGGCTTGGGAGCAAGTTTGCTCTCCGAAGTCTAAGGGAGGGCTGGGTATTCGACCAGTTTCTTGTTTTAACAAAGCAGCCTTAGCCAAACTAGGTTGGAAAGTCATCACAGACCATAATAACTGGTGGGTTGAGATAGTTAGGAAAAAATATCTCTGGAAGTTCTCCTTTTTTGATGTTCCTAAGCAACCTCATCAGTCTTTTGCTTGGAAGGGTATTTTGGATTCTAGAGATATTATTCTCAAAGGAATGAGATGGATTATTGGGAATGGTCGTAATATAAAATTTTGGACCTTCAATTGGATCTATGATTTCCCCTTAATTCAGCTGGTTGATGAGAATACCAGACCCTTTATTGATCTGGATGAGTCTGTTTTGGATTATTTTGATAATGGTGTGTGGAATATTGATAAACTAAATCTACATTTAGACTCTTCTATTGTTAGAGATATCTCCTTTGTTAATCTTCCATTTTCTGACAGGGAAGACGAGTTTGTTTGGGGGCCGGCTTCTGATGGGAAATTCTCCATTAAGTCAGCCACCTGGTTTCAATGCAATCAGAATGTTCATCCTAAGGCAAATTTACTGAACAAAATCTGGAAGCTTAATCTCCCTCCAAAAGCTAAAATCTTTGCTTGGCTTCTTGTTAGGGATAGACTAAAAACTAGAGCAAGACTTTCTCGCTTTAATTCTAATATCAATCCTGTCTGTGGTTTGTGTAACAATGATGTGGAAACCTCGGATCATATTTTTTGGTCGTGCCCAAAAGTTTGGGATGTTTGGACTATTTCTAATCTGAATCACAACCCTACGACCTTTAATTGTTTTGATGATTGGATTGTTTCAATCGTCAGGGTTTTGCCCGGCTTCTGTAGTGCATGCTTCAGCCTCCTTTTGCGCTGCCTACAGAACCCAGAACCCCCATGTTGCTGCTTCATCCACTACCTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

331

Amino Acids

38.6

Weight (kDa)

8.92

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 189 - 275 1.4e-19 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 353, 792
AcsI RAATTY 4 cut(s) 7, 326, 563, 622
AcuI CTGAAG 1 cut(s) 910
AfiI CCNNNNNNNGG 2 cut(s) 342, 752
AflII CTTAAG 1 cut(s) 989
AgsI TTSAA 3 cut(s) 340, 593, 888
AjnI CCWGG 1 cut(s) 584
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 4 cut(s) 24, 370, 646, 665
AluI AGCT 4 cut(s) 24, 370, 646, 665
AlwI GGATC 2 cut(s) 353, 792
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 3 cut(s) 119, 942, 972
ApoI RAATTY 4 cut(s) 7, 326, 563, 622
AspLEI GCGC 1 cut(s) 942
AspS9I GGNCC 2 cut(s) 333, 545
AsuC2I CCSGG 1 cut(s) 906
AvaII GGWCC 1 cut(s) 333
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 131, 929, 959
BccI CCATC 2 cut(s) 291, 551
BciT130I CCWGG 1 cut(s) 586
BcnI CCSGG 1 cut(s) 906
BfaI CTAG 3 cut(s) 134, 270, 708
BfmI CTRYAG 2 cut(s) 913, 947
BfrI CTTAAG 1 cut(s) 989
BisI GCNGC 3 cut(s) 120, 943, 973
BlsI GCNGC 3 cut(s) 121, 944, 974
Bme1390I CCNGG 2 cut(s) 586, 906
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 333, 545
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 586, 906
BpiI GAAGAC 1 cut(s) 534
Bpu10I CCTNAGC 2 cut(s) 124, 225
BpuMI CCSGG 1 cut(s) 906
BsaJI CCNNGG 1 cut(s) 780
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 752
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 98, 170
Bse21I CCTNAGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 4 cut(s) 412, 610, 823, 978
BseLI CCNNNNNNNGG 2 cut(s) 342, 752
BseNI ACTGG 2 cut(s) 98, 170
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 806
BseXI GCAGC 3 cut(s) 131, 929, 959
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 547
BsiSI CCGG 3 cut(s) 41, 548, 906
BslI CCNNNNNNNGG 2 cut(s) 342, 752
BsnI GGCC 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 806
Bsp143I GATC 3 cut(s) 345, 400, 784
BspANI GGCC 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 2 cut(s) 353, 792
BspQI GCTCTTC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 989
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 2 cut(s) 98, 170
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 3 cut(s) 345, 400, 784
Bst2UI CCWGG 1 cut(s) 586
Bst6I CTCTTC 2 cut(s) 31, 481
BstAFI CTTAAG 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 549, 922
BstDEI CTNAG 4 cut(s) 75, 124, 225, 615
BstF5I GGATG 4 cut(s) 412, 610, 823, 978
BstHHI GCGC 1 cut(s) 942
BstKTI GATC 3 cut(s) 348, 403, 787
BstMBI GATC 3 cut(s) 345, 400, 784
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 586
BstNSI RCATGY 1 cut(s) 924
BstSCI CCNGG 2 cut(s) 584, 904
BstSFI CTRYAG 2 cut(s) 913, 947
BstSLI GKGCMC 1 cut(s) 806
BstV1I GCAGC 3 cut(s) 131, 929, 959
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 1 cut(s) 547
BtsCI GGATG 4 cut(s) 412, 610, 823, 978
Cac8I GCNNGC 2 cut(s) 549, 922
CfoI GCGC 1 cut(s) 942
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 333, 545
CsiI ACCWGGT 1 cut(s) 584
CviAII CATG 2 cut(s) 921, 966
DdeI CTNAG 4 cut(s) 75, 124, 225, 615
DpnI GATC 3 cut(s) 347, 402, 786
DpnII GATC 3 cut(s) 345, 400, 784
Eam1104I CTCTTC 2 cut(s) 31, 481
EarI CTCTTC 2 cut(s) 31, 481
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 910
Eco81I CCTNAGG 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 584
EcoRV GATATC 1 cut(s) 493
FaeI CATG 2 cut(s) 924, 969
FaiI YATR 6 cut(s) 159, 323, 351, 789, 922, 967
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 920, 965
Fnu4HI GCNGC 3 cut(s) 120, 943, 973
FokI GGATG 4 cut(s) 419, 597, 830, 965
Fsp4HI GCNGC 3 cut(s) 120, 943, 973
FspBI CTAG 3 cut(s) 134, 270, 708
GlaI GCGC 1 cut(s) 941
GluI GCNGC 3 cut(s) 120, 943, 973
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 547
HapII CCGG 3 cut(s) 41, 548, 906
HhaI GCGC 1 cut(s) 942
Hin1II CATG 2 cut(s) 924, 969
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 266, 410, 473, 841
HpaII CCGG 3 cut(s) 41, 548, 906
Hpy188I TCNGA 6 cut(s) 69, 520, 556, 603, 784, 840
Hpy188III TCNNGA 4 cut(s) 199, 270, 404, 640
HpyAV CCTTC 2 cut(s) 247, 346
HpyCH4V TGCA 2 cut(s) 597, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 4 cut(s) 75, 124, 225, 615
Hsp92II CATG 2 cut(s) 924, 969
HspAI GCGC 1 cut(s) 940
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Kzo9I GATC 3 cut(s) 345, 400, 784
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 3 cut(s) 131, 929, 959
MabI ACCWGGT 1 cut(s) 584
MaeI CTAG 3 cut(s) 134, 270, 708
MaeIII GTNAC 1 cut(s) 761
MalI GATC 3 cut(s) 347, 402, 786
MboI GATC 3 cut(s) 345, 400, 784
MboII GAAGA 4 cut(s) 18, 468, 500, 539
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 806
MluCI AATT 8 cut(s) 7, 326, 340, 363, 563, 622, 730, 862
MlyI GAGTC 2 cut(s) 419, 467
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 7 cut(s) 43, 48, 74, 243, 666, 790, 941
MroNI GCCGGC 1 cut(s) 547
MseI TTAA 8 cut(s) 111, 362, 504, 573, 648, 729, 861, 990
MspA1I CMGCKG 1 cut(s) 370
MspCI CTTAAG 1 cut(s) 989
MspI CCGG 3 cut(s) 41, 548, 906
MspR9I CCNGG 2 cut(s) 586, 906
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 586
MwoI GCNNNNNNNGC 1 cut(s) 125
NaeI GCCGGC 1 cut(s) 549
NciI CCSGG 1 cut(s) 906
NdeII GATC 3 cut(s) 345, 400, 784
NgoMIV GCCGGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 924, 969
NlaIV GGNNCC 1 cut(s) 546
NspI RCATGY 1 cut(s) 924
PaeI GCATGC 1 cut(s) 924
PciSI GCTCTTC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 266, 841
PkrI GCNGC 3 cut(s) 121, 944, 974
PleI GAGTC 2 cut(s) 418, 467
PpsI GAGTC 2 cut(s) 418, 467
Psp6I CCWGG 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 2 cut(s) 333, 545
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 8 cut(s) 111, 362, 504, 573, 648, 729, 861, 990
SatI GCNGC 3 cut(s) 120, 943, 973
Sau3AI GATC 3 cut(s) 345, 400, 784
Sau96I GGNCC 2 cut(s) 333, 545
SchI GAGTC 2 cut(s) 419, 467
ScrFI CCNGG 2 cut(s) 586, 906
SduI GDGCHC 1 cut(s) 806
SexAI ACCWGGT 1 cut(s) 584
SfcI CTRYAG 2 cut(s) 913, 947
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SphI GCATGC 1 cut(s) 924
Sse9I AATT 8 cut(s) 7, 326, 340, 363, 563, 622, 730, 862
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 134, 270, 708
StyD4I CCNGG 2 cut(s) 584, 904
TaqI TCGA 1 cut(s) 94
TasI AATT 8 cut(s) 7, 326, 340, 363, 563, 622, 730, 862
TfiI GAWTC 2 cut(s) 266, 841
Tru1I TTAA 8 cut(s) 111, 362, 504, 573, 648, 729, 861, 990
Tru9I TTAA 8 cut(s) 111, 362, 504, 573, 648, 729, 861, 990
TseI GCWGC 3 cut(s) 119, 942, 972
TspDTI ATGAA 2 cut(s) 599, 967
Vha464I CTTAAG 1 cut(s) 989
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 4 cut(s) 7, 326, 563, 622
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 924
XspI CTAG 3 cut(s) 134, 270, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.