Rmu_sc0006301.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006301.1
OG0000492
Physical Location & Seq
Forward (+)
48094 .. 51049
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006301.1_g000009.1.cds

Sequence Viewer

Length: 1095 bp
atggacactttcgctacttgtagttacaaggactacagagtagttggccggttcttgaaggatgacgaatcaggttttgagtatgtggtcggggagcatacagaggaggcacatggctcggcttggcgcctttctcctcgactttatcaagaaatggttttggatgtcattcgtgagatgtcagtttctcattggcttggggtcgcggcgctgtgggaccccccctctcggggcaatacccaccctagcattgcttggcatcaaacttgttggcctaaatccaagggaggtttaggaattagacctcctaagcactttaacaaagcagctcttgctaaactaagctggaagattcttacacaaccggataactggtgggttcagcttgtaactagaaaatatctcaggaatggtcatctcttcactgttcagaaaaagactgctaattccatggcttggaaagggattttggatgctcgtgatctcttaatagaaggcattagttggattgtgggagatggtaagtccattttgttttggtctttcaattgggtgttacattttcctttattctctattgttcctgagaatcaaaggcattcaattgattggtcaattacggtgtcacacttcatccataatatgagttggaatacagaagctcttcttcatatcctaccccctgatattgtagatcaaataacggctattccgttgcctatttaccctagagctaacgagtttttctggaggccctcaccttcagatccttccccaattaaaactacgtttagggctgctgtcttgggatctaattactgcaaagccaacccgcactttagacctcatcacatttttaagtctcttcacattaaatggcaaccttcggatttgaaccaggtcaaattgaactttgatggttctgtccagaatggtacaaccaccattggatttgttattagaaattctgatgggaatccattgtttgctataaataagaagctaggtcatactggagtacttgtagttgaagccaccgccctcagaaaaggtctgcatacgactcttctacacaccagcatcagcatatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

364

Amino Acids

41.44

Weight (kDa)

9.42

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 456
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 206, 833, 1038
AclWI GGATC 2 cut(s) 761, 817
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 964
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 937, 1020
AfiI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 456
AgsI TTSAA 6 cut(s) 58, 547, 603, 895, 910, 1031
AjnI CCWGG 1 cut(s) 897
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 6 cut(s) 329, 345, 385, 662, 734, 1003
AluI AGCT 6 cut(s) 329, 345, 385, 662, 734, 1003
Alw26I GTCTC 1 cut(s) 867
AlwI GGATC 2 cut(s) 761, 817
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 3 cut(s) 46, 272, 752
ApeKI GCWGC 2 cut(s) 326, 797
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 2 cut(s) 129, 211
AspS9I GGNCC 2 cut(s) 217, 753
AsuHPI GGTGA 1 cut(s) 750
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 126
BauI CACGAG 1 cut(s) 477
BbvI GCAGC 2 cut(s) 338, 784
BccI CCATC 3 cut(s) 512, 911, 965
BceAI ACGGC 1 cut(s) 720
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 899
BcoDI GTCTC 1 cut(s) 867
BfaI CTAG 4 cut(s) 246, 393, 729, 1004
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 2 cut(s) 130, 212
BisI GCNGC 3 cut(s) 207, 327, 798
BlsI GCNGC 3 cut(s) 208, 328, 799
BmcAI AGTACT 1 cut(s) 1020
Bme1390I CCNGG 1 cut(s) 899
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 217, 753
BmiI GGNNCC 3 cut(s) 128, 218, 219
BmrFI CCNGG 1 cut(s) 899
BmsI GCATC 3 cut(s) 268, 463, 1089
BpmI CTGGAG 2 cut(s) 769, 1035
Bpu10I CCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 282, 450
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 229, 230, 456
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 377, 1018
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 1 cut(s) 899
BseDI CCNNGG 2 cut(s) 282, 450
BseGI GGATG 4 cut(s) 67, 169, 478, 633
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 456
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 418, 576, 1057
BseNI ACTGG 2 cut(s) 377, 1018
BseRI GAGGAG 2 cut(s) 119, 126
BseXI GCAGC 2 cut(s) 338, 784
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 48, 274, 754
BshNI GGYRCC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 2 cut(s) 49, 365
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 456
BsmAI GTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 48, 274, 754
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 4 cut(s) 481, 694, 766, 809
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 3 cut(s) 206, 833, 1038
BspANI GGCC 3 cut(s) 48, 274, 754
BspCNI CTCAG 3 cut(s) 417, 577, 1056
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 128, 218, 219
BspPI GGATC 2 cut(s) 761, 817
BspQI GCTCTTC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 2 cut(s) 377, 1018
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 282, 450
BssMI GATC 4 cut(s) 481, 694, 766, 809
BssNI GRCGYC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 282, 450
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 899
Bst4CI ACNGT 2 cut(s) 427, 622
Bst6I CTCTTC 4 cut(s) 425, 669, 870, 1071
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 332
BstDEI CTNAG 6 cut(s) 309, 341, 404, 585, 1043, 1092
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 4 cut(s) 67, 169, 478, 633
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 2 cut(s) 130, 212
BstHHI GCGC 2 cut(s) 129, 211
BstKTI GATC 4 cut(s) 484, 697, 769, 812
BstMAI GTCTC 1 cut(s) 867
BstMBI GATC 4 cut(s) 481, 694, 766, 809
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 897
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 338, 784
BstX2I RGATCY 2 cut(s) 766, 809
BstYI RGATCY 2 cut(s) 766, 809
BsuRI GGCC 3 cut(s) 48, 274, 754
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 4 cut(s) 67, 169, 478, 633
BtsIMutI CAGTG 1 cut(s) 423
CfoI GCGC 2 cut(s) 129, 211
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 217, 753
CsiI ACCWGGT 1 cut(s) 897
Csp6I GTAC 2 cut(s) 936, 1019
CviAII CATG 2 cut(s) 113, 451
CviQI GTAC 2 cut(s) 936, 1019
DdeI CTNAG 6 cut(s) 309, 341, 404, 585, 1043, 1092
DinI GGCGCC 1 cut(s) 128
DpnI GATC 4 cut(s) 483, 696, 768, 811
DpnII GATC 4 cut(s) 481, 694, 766, 809
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 4 cut(s) 425, 669, 870, 1071
EarI CTCTTC 4 cut(s) 425, 669, 870, 1071
Eco130I CCWWGG 2 cut(s) 282, 450
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 228
EcoO109I RGGNCCY 2 cut(s) 217, 753
EcoRII CCWGG 1 cut(s) 897
EcoT14I CCWWGG 2 cut(s) 282, 450
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 2 cut(s) 282, 450
FaeI CATG 2 cut(s) 116, 454
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 651, 683
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 112, 450
FauI CCCGC 1 cut(s) 840
Fnu4HI GCNGC 3 cut(s) 207, 327, 798
FokI GGATG 4 cut(s) 74, 176, 485, 620
Fsp4HI GCNGC 3 cut(s) 207, 327, 798
FspBI CTAG 4 cut(s) 246, 393, 729, 1004
GlaI GCGC 2 cut(s) 128, 210
GluI GCNGC 3 cut(s) 207, 327, 798
GsuI CTGGAG 2 cut(s) 769, 1035
HaeII RGCGCY 2 cut(s) 130, 212
HaeIII GGCC 3 cut(s) 48, 274, 754
HapII CCGG 2 cut(s) 49, 365
HhaI GCGC 2 cut(s) 129, 211
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 2 cut(s) 116, 454
Hin6I GCGC 2 cut(s) 127, 209
HinP1I GCGC 2 cut(s) 127, 209
HinfI GANTC 5 cut(s) 68, 352, 589, 976, 1063
HpaII CCGG 2 cut(s) 49, 365
HphI GGTGA 1 cut(s) 750
Hpy188I TCNGA 5 cut(s) 432, 766, 889, 970, 1046
Hpy188III TCNNGA 8 cut(s) 55, 149, 173, 406, 479, 584, 748, 928
HpyAV CCTTC 5 cut(s) 52, 488, 771, 780, 894
HpyCH4III ACNGT 2 cut(s) 427, 622
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 2 cut(s) 822, 1057
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 6 cut(s) 309, 341, 404, 585, 1043, 1092
HpySE526I ACGT 1 cut(s) 788
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 116, 454
HspAI GCGC 2 cut(s) 127, 209
KasI GGCGCC 1 cut(s) 126
KflI GGGWCCC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 481, 694, 766, 809
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 338, 784
LweI GCATC 3 cut(s) 268, 463, 1089
MabI ACCWGGT 1 cut(s) 897
MaeI CTAG 4 cut(s) 246, 393, 729, 1004
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 4 cut(s) 23, 388, 555, 624
MalI GATC 4 cut(s) 483, 696, 768, 811
MboI GATC 4 cut(s) 481, 694, 766, 809
MboII GAAGA 6 cut(s) 361, 412, 656, 659, 857, 1058
MfeI CAATTG 2 cut(s) 547, 603
MflI RGATCY 2 cut(s) 766, 809
MluCI AATT 9 cut(s) 297, 445, 547, 603, 615, 777, 814, 905, 964
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 1057
MmeI TCCRAC 2 cut(s) 485, 629
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 5 cut(s) 318, 488, 780, 858, 873
MspI CCGG 2 cut(s) 49, 365
MspR9I CCNGG 1 cut(s) 899
MunI CAATTG 2 cut(s) 547, 603
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 899
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 332
NarI GGCGCC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 450
NdeII GATC 4 cut(s) 481, 694, 766, 809
NlaIII CATG 2 cut(s) 116, 454
NlaIV GGNNCC 3 cut(s) 128, 218, 219
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 710
PctI GAATGC 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 4 cut(s) 68, 352, 589, 976
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 3 cut(s) 208, 328, 799
PleI GAGTC 1 cut(s) 1057
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 1057
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 897
PspGI CCWGG 1 cut(s) 897
PspN4I GGNNCC 3 cut(s) 128, 218, 219
PspPI GGNCC 2 cut(s) 217, 753
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 2 cut(s) 766, 809
RsaI GTAC 2 cut(s) 937, 1020
RsaNI GTAC 2 cut(s) 936, 1019
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 5 cut(s) 318, 488, 780, 858, 873
SatI GCNGC 3 cut(s) 207, 327, 798
Sau3AI GATC 4 cut(s) 481, 694, 766, 809
Sau96I GGNCC 2 cut(s) 217, 753
ScaI AGTACT 1 cut(s) 1020
SchI GAGTC 1 cut(s) 1057
ScrFI CCNGG 1 cut(s) 899
SexAI ACCWGGT 1 cut(s) 897
SfaNI GCATC 3 cut(s) 268, 463, 1089
SfcI CTRYAG 1 cut(s) 34
SfoI GGCGCC 1 cut(s) 128
SinI GGWCC 1 cut(s) 217
Sse9I AATT 9 cut(s) 297, 445, 547, 603, 615, 777, 814, 905, 964
SsiI CCGC 3 cut(s) 206, 833, 1038
SspDI GGCGCC 1 cut(s) 126
SspMI CTAG 4 cut(s) 246, 393, 729, 1004
StyD4I CCNGG 1 cut(s) 897
StyI CCWWGG 2 cut(s) 282, 450
TaaI ACNGT 2 cut(s) 427, 622
TaiI ACGT 1 cut(s) 791
TaqI TCGA 1 cut(s) 139
TasI AATT 9 cut(s) 297, 445, 547, 603, 615, 777, 814, 905, 964
TatI WGTACW 1 cut(s) 1018
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 4 cut(s) 68, 352, 589, 976
Tru1I TTAA 5 cut(s) 318, 488, 780, 858, 873
Tru9I TTAA 5 cut(s) 318, 488, 780, 858, 873
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 2 cut(s) 326, 797
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 2 cut(s) 622, 659
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 4 cut(s) 246, 393, 729, 1004
ZrmI AGTACT 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.