Rorug05G0326500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000492
Physical Location & Seq
Reverse (-)
39253740 .. 39254321
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0326500.1

Sequence Viewer

Length: 582 bp
ATGAATATACTGTATTGGAATGCTCGAGGTATCGCAAATATTGATACTCAACGGGCTCTAACTTCCATGGTTCGTATTCATAAACCCATAATTCTCTGCTTATCCGAACCATTTGTTCCTCTATCTGCAATTCCGGATGCTTTTTGGCGTTCCTTGGGTTTGTTTCCTTTTGCTACTACTGACCGGGGACTTTCAAACCCCAACCTTTGGTTTCTATGTCACCCAGATATCAAACCAGTTTTACTTTCTGCTACTGCACAACAAATTTCAGTATCCTGTTCTCTTGATGGTGTCTCTTATATCCTCTCCACTGTCTACGGAAAGACTACTATTGCTGGCAGACGGTTATTGTGGCATGATCTTAGTACAATTGCCTCTTCCTATGTTCAAGGCCCTTGGCTGGTATTCGGTGACTTTAACTGTGTTATTGGGGCACATGAAAAGCGTGGTGGAAACCCGCCTAATGCTCGCTCGTGCATGGATTTCCAAAGCATGTGCACTACTTGCAGTCTACTCGACATACCAACAAAAGGGCTTTCTTATACTTGGACTGACAAAAGAACTTATACTCGCCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

193

Amino Acids

21.51

Weight (kDa)

8.72

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AccI GTMKAC 2 cut(s) 315, 511
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 207, 400, 530
AgsI TTSAA 2 cut(s) 195, 389
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 1 cut(s) 391
ApaLI GTGCAC 1 cut(s) 496
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 212, 422
AvaI CYCGRG 1 cut(s) 24
BaeGI GKGCMC 2 cut(s) 436, 500
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 500
BccI CCATC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 66, 153, 184, 395
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 400, 530
Bse1I ACTGG 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 133
BseDI CCNNGG 4 cut(s) 66, 153, 184, 395
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 207, 400, 530
BseNI ACTGG 1 cut(s) 236
BseSI GKGCMC 2 cut(s) 436, 500
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 134, 184
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 207, 400, 530
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 58, 436, 500
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 66, 153, 184, 395
BssMI GATC 1 cut(s) 358
BssSI CACGAG 1 cut(s) 472
BssT1I CCWWGG 3 cut(s) 66, 153, 395
Bst2BI CACGAG 1 cut(s) 472
Bst4CI ACNGT 4 cut(s) 12, 313, 345, 422
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 337, 469
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 2 cut(s) 436, 500
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 337, 469
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 366
CviAII CATG 5 cut(s) 67, 356, 437, 478, 493
CviJI RGCY 4 cut(s) 56, 393, 400, 535
CviKI_1 RGCY 4 cut(s) 56, 393, 400, 535
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 66, 153, 395
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 392
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 3 cut(s) 66, 153, 395
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 3 cut(s) 66, 153, 395
FaeI CATG 5 cut(s) 70, 359, 440, 481, 496
FaqI GGGAC 1 cut(s) 201
FatI CATG 5 cut(s) 66, 355, 436, 477, 492
FauI CCCGC 1 cut(s) 465
FblI GTMKAC 2 cut(s) 315, 511
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 134, 184
Hin1II CATG 5 cut(s) 70, 359, 440, 481, 496
HpaII CCGG 2 cut(s) 134, 184
HphI GGTGA 2 cut(s) 212, 422
Hpy166II GTNNAC 3 cut(s) 316, 498, 512
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 134, 284
Hpy8I GTNNAC 3 cut(s) 316, 498, 512
HpyCH4III ACNGT 4 cut(s) 12, 313, 345, 422
HpyCH4V TGCA 5 cut(s) 128, 257, 477, 498, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 504
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 5 cut(s) 70, 359, 440, 481, 496
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 7 cut(s) 147, 197, 237, 249, 289, 321, 386
LweI GCATC 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 218, 410
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 1 cut(s) 369
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 3 cut(s) 58, 436, 500
MluCI AATT 4 cut(s) 90, 129, 264, 369
MnlI CCTC 4 cut(s) 20, 129, 314, 385
MroI TCCGGA 1 cut(s) 133
MseI TTAA 1 cut(s) 417
MspI CCGG 2 cut(s) 134, 184
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 504
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 66
NdeII GATC 1 cut(s) 358
NlaIII CATG 5 cut(s) 70, 359, 440, 481, 496
NmuCI GTSAC 2 cut(s) 218, 410
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 24
PctI GAATGC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 207
PspPI GGNCC 1 cut(s) 392
PspXI VCTCGAGB 1 cut(s) 24
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 3 cut(s) 58, 436, 500
SetI ASST 2 cut(s) 31, 207
SfaNI GCATC 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 4 cut(s) 90, 129, 264, 369
SsiI CCGC 1 cut(s) 458
SspI AATATT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 3 cut(s) 66, 153, 395
TaaI ACNGT 4 cut(s) 12, 313, 345, 422
TaqI TCGA 3 cut(s) 25, 516, 576
TasI AATT 4 cut(s) 90, 129, 264, 369
TatI WGTACW 1 cut(s) 365
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 218, 410
Tsp45I GTSAC 2 cut(s) 218, 410
TspDTI ATGAA 3 cut(s) 17, 68, 453
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 207
VneI GTGCAC 1 cut(s) 496
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 24
XmiI GTMKAC 2 cut(s) 315, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.