Rmu_sc0002283.1_g000086

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002283.1
OG0000492
Physical Location & Seq
Forward (+)
315432 .. 315863
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002283.1_g000086.1.cds

Sequence Viewer

Length: 432 bp
atgaacaaattatggtggctgaacatccaaccaaaggctaaactatttggttggctactgttaagagaacggttgaaaacgagagatcgactatcccggtttgggataataaatgataacacttgcccaatatgccaagaagataatgaaactgcggatcacctatttggtgtttgtacttttgccaaggaggtgtggagattaacggggttttcctcatcactaaactgggaggaaggctacattggagtacttctggatttgtttgaaaatggtccatttagagaggatctattcactttggtcattactacgtgctggcagctttggagagctagaaatgatgtaattttcagggttggaaaacctaaccctgcttcagtcgtagcagctgctgctgctgctgggaaatcggaacacagggttaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

8.42

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 165, 297
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 178, 252
AfiI CCNNNNNNNGG 2 cut(s) 34, 102
AgsI TTSAA 2 cut(s) 76, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 3 cut(s) 325, 335, 392
AluI AGCT 3 cut(s) 325, 335, 392
AlwI GGATC 2 cut(s) 165, 297
AlwNI CAGNNNCTG 1 cut(s) 395
ApeKI GCWGC 6 cut(s) 322, 389, 392, 395, 398, 401
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 6 cut(s) 334, 379, 382, 385, 388, 401
BcnI CCSGG 1 cut(s) 97
BfaI CTAG 1 cut(s) 336
BisI GCNGC 6 cut(s) 323, 390, 393, 396, 399, 402
BlsI GCNGC 6 cut(s) 324, 391, 394, 397, 400, 403
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 102
Bse1I ACTGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 34, 102
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 6 cut(s) 334, 379, 382, 385, 388, 401
BseYI CCCAGC 1 cut(s) 404
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 34, 102
Bsp143I GATC 3 cut(s) 85, 157, 289
BspACI CCGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 165, 297
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 85, 157, 289
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 60, 72
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 3 cut(s) 88, 160, 292
BstMBI GATC 3 cut(s) 85, 157, 289
BstMWI GCNNNNNNNGC 4 cut(s) 132, 395, 398, 401
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 6 cut(s) 334, 379, 382, 385, 388, 401
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 177, 251
CviJI RGCY 7 cut(s) 19, 38, 55, 240, 325, 335, 392
CviKI_1 RGCY 7 cut(s) 19, 38, 55, 240, 325, 335, 392
CviQI GTAC 2 cut(s) 177, 251
DpnI GATC 3 cut(s) 87, 159, 291
DpnII GATC 3 cut(s) 85, 157, 289
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaiI YATR 2 cut(s) 13, 133
Fnu4HI GCNGC 6 cut(s) 323, 390, 393, 396, 399, 402
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 6 cut(s) 323, 390, 393, 396, 399, 402
FspBI CTAG 1 cut(s) 336
GluI GCNGC 6 cut(s) 323, 390, 393, 396, 399, 402
GsaI CCCAGC 1 cut(s) 408
HapII CCGG 1 cut(s) 97
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 60, 72
HpyCH4IV ACGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 395, 398, 401
HpySE526I ACGT 1 cut(s) 314
Kzo9I GATC 3 cut(s) 85, 157, 289
LpnPI CCDG 8 cut(s) 110, 214, 242, 304, 340, 387, 390, 406
Lsp1109I GCAGC 6 cut(s) 334, 379, 382, 385, 388, 401
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 314
MalI GATC 3 cut(s) 87, 159, 291
MboI GATC 3 cut(s) 85, 157, 289
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 289
MluCI AATT 3 cut(s) 8, 348, 427
MmeI TCCRAC 2 cut(s) 52, 340
MnlI CCTC 4 cut(s) 184, 226, 226, 280
MseI TTAA 4 cut(s) 62, 203, 426, 430
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 4 cut(s) 132, 395, 398, 401
NciI CCSGG 1 cut(s) 97
NdeII GATC 3 cut(s) 85, 157, 289
PacI TTAATTAA 1 cut(s) 430
PkrI GCNGC 6 cut(s) 324, 391, 394, 397, 400, 403
Ppu21I YACGTR 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 178, 252
RsaNI GTAC 2 cut(s) 177, 251
SaqAI TTAA 4 cut(s) 62, 203, 426, 430
SatI GCNGC 6 cut(s) 323, 390, 393, 396, 399, 402
Sau3AI GATC 3 cut(s) 85, 157, 289
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 97
SetI ASST 7 cut(s) 165, 195, 317, 327, 337, 370, 394
SinI GGWCC 1 cut(s) 275
Sse9I AATT 3 cut(s) 8, 348, 427
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 60, 72
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 8, 348, 427
TatI WGTACW 2 cut(s) 176, 250
Tru1I TTAA 4 cut(s) 62, 203, 426, 430
Tru9I TTAA 4 cut(s) 62, 203, 426, 430
TseI GCWGC 6 cut(s) 322, 389, 392, 395, 398, 401
TspDTI ATGAA 2 cut(s) 17, 162
VpaK11BI GGWCC 1 cut(s) 275
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.