MD07G1291800.v1.1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000492
Physical Location & Seq
Forward (+)
35285171 .. 35289257
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1291800.v1.1.491

Sequence Viewer

Length: 489 bp
ATGAAGAGAATGGGTTTCTGTAGTATGTGGAGAAAGCTTGTTATGGGATGTGTTTCTTCTGTTAAATTTGTGGTCCTTATCAATGGGCAGCCAGGTGACAAGTTTGCTCCTTCTAGGGGTCTCAGGCAGGGAGACCCATTATCTCTGTATATGTTTATTTTACTTGGGGAGGTTCTTTCGAGCATGATTCATGAAGCGGTTGATGATAAAAGGTTGGAAGGAATGCGGCTCGGTGTCTCGGGGCCTATCATTTCTTACATGTTTTTTGCGGACAATACTCTTCTTTTTCTGAGAGCAGATGTAAATAATTGCTTATGTGAAAGGGAGAAGTGTGGCCTTGCTTATGTGAAGGGGAGAATCTTGGGAAAGCTCCAAGGGTGGAAACAGAGTGCTTTGTCGCGGGTGGGAAGAGAAGTTTTGATTAAGGCTGTGGTCCAAGCTATTCCTGCTTATCCTATGAGCATTTTTAAATTTCCTGCTGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

163

Amino Acids

18.04

Weight (kDa)

9.68

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 400
AciI CCGC 4 cut(s) 197, 226, 269, 400
AcsI RAATTY 2 cut(s) 65, 470
AfiI CCNNNNNNNGG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 258
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 37, 370, 440
AluI AGCT 3 cut(s) 37, 370, 440
Alw26I GTCTC 3 cut(s) 125, 126, 241
Ama87I CYCGRG 1 cut(s) 238
AoxI GGCC 2 cut(s) 242, 334
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 65, 470
AspS9I GGNCC 3 cut(s) 73, 242, 433
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 2 cut(s) 73, 433
BbvI GCAGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 125, 126, 241
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 2 cut(s) 89, 227
BlsI GCNGC 2 cut(s) 90, 228
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 2 cut(s) 73, 433
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 3 cut(s) 73, 242, 433
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 125, 126
BsaJI CCNNGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 136, 281
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 244, 336
BsiHKCI CYCGRG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 125, 126, 241
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 2 cut(s) 244, 336
Bso31I GGTCTC 2 cut(s) 125, 126
BsoBI CYCGRG 1 cut(s) 238
BspACI CCGC 4 cut(s) 197, 226, 269, 400
BspANI GGCC 2 cut(s) 244, 336
BspCNI CTCAG 2 cut(s) 135, 282
BspFNI CGCG 1 cut(s) 400
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 243
BspTNI GGTCTC 2 cut(s) 125, 126
BssECI CCNNGG 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 285, 403
BstDEI CTNAG 2 cut(s) 122, 290
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 1 cut(s) 400
BstMAI GTCTC 3 cut(s) 125, 126, 241
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 19
BstUI CGCG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 244, 336
BtsCI GGATG 1 cut(s) 53
CciI TCATGA 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 73, 242, 433
CviAII CATG 3 cut(s) 184, 191, 259
CviJI RGCY 8 cut(s) 37, 91, 229, 244, 336, 370, 428, 440
CviKI_1 RGCY 8 cut(s) 37, 91, 229, 244, 336, 370, 428, 440
DdeI CTNAG 2 cut(s) 122, 290
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 285, 403
EarI CTCTTC 2 cut(s) 285, 403
Eco130I CCWWGG 1 cut(s) 373
Eco31I GGTCTC 2 cut(s) 125, 126
Eco47I GGWCC 2 cut(s) 73, 433
Eco88I CYCGRG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 3 cut(s) 187, 194, 262
FatI CATG 3 cut(s) 183, 190, 258
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 89, 227
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 89, 227
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 89, 227
HaeIII GGCC 2 cut(s) 244, 336
Hin1II CATG 3 cut(s) 187, 194, 262
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 2 cut(s) 187, 357
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 3 cut(s) 120, 212, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 2 cut(s) 122, 290
Hsp92II CATG 3 cut(s) 187, 194, 262
LmnI GCTCC 2 cut(s) 112, 375
LpnPI CCDG 5 cut(s) 78, 105, 109, 113, 459
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 4 cut(s) 16, 48, 272, 420
MluCI AATT 3 cut(s) 65, 307, 470
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 163
MseI TTAA 3 cut(s) 63, 423, 468
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 1 cut(s) 446
NlaIII CATG 3 cut(s) 187, 194, 262
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 262
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 258
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 187, 357
PkrI GCNGC 2 cut(s) 90, 228
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 3 cut(s) 73, 242, 433
SaqAI TTAA 3 cut(s) 63, 423, 468
SatI GCNGC 2 cut(s) 89, 227
Sau96I GGNCC 3 cut(s) 73, 242, 433
ScrFI CCNGG 1 cut(s) 93
SetI ASST 6 cut(s) 39, 97, 174, 215, 372, 442
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 73, 433
Sse9I AATT 3 cut(s) 65, 307, 470
SsiI CCGC 4 cut(s) 197, 226, 269, 400
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 373
TaqI TCGA 1 cut(s) 179
TasI AATT 3 cut(s) 65, 307, 470
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 2 cut(s) 187, 357
Tru1I TTAA 3 cut(s) 63, 423, 468
Tru9I TTAA 3 cut(s) 63, 423, 468
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 17, 179, 207
VpaK11BI GGWCC 2 cut(s) 73, 433
XapI RAATTY 2 cut(s) 65, 470
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.