Rmu_sc0010560.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010560.1
OG0000492
Physical Location & Seq
Reverse (-)
51598 .. 52227
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010560.1_g000011.1.cds

Sequence Viewer

Length: 588 bp
atgctggtgaaccaaatacagggtattctgattcctgtatccaaccaggaagatgaatacatttggggtcattccaccagtgaaatagataatcatagcagcttagaattactaaagaagctctggaagcttaatgttccccctaaagttcaactctttggatggctcctctttagaggacggttcaagacaagggatcgcctttccagatttggctatgttgatgacaactcttgtccactgtgtgacaatgataatgaaacagcagaccacttgtgtgggtgctgtgaattcacaaaagaagtctggaagctggctaatcttaatgatctatcttggaatgaaggataccttcaagttttcaagaaattgtttgttgaccaaacttgtgatcgggggctttttgtcaaaatcttaacattatgctggcagatttggaaagctaggaatgatgccattttcagtggagtgatctcttgccccaaatccattattgcagcagcggcggccttccaaaacctggtagctccagtagcatgccccttgggtggaggcaccccacaaattgctaaccacaacattgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

6.41

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 520
AciI CCGC 2 cut(s) 503, 506
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 19, 520, 548
AgsI TTSAA 4 cut(s) 152, 187, 356, 364
AjnI CCWGG 2 cut(s) 45, 519
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 6 cut(s) 102, 121, 130, 313, 443, 527
AluI AGCT 6 cut(s) 102, 121, 130, 313, 443, 527
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 3 cut(s) 99, 497, 500
ApoI RAATTY 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 111, 509, 512
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 47, 521
BciVI GTATCC 2 cut(s) 49, 341
BfaI CTAG 1 cut(s) 444
BfuI GTATCC 2 cut(s) 49, 341
BisI GCNGC 5 cut(s) 100, 498, 501, 504, 507
BlsI GCNGC 5 cut(s) 101, 499, 502, 505, 508
Bme1390I CCNGG 2 cut(s) 47, 521
BmiI GGNNCC 2 cut(s) 167, 556
BmrFI CCNGG 2 cut(s) 47, 521
BmsI GCATC 1 cut(s) 442
BpmI CTGGAG 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 543
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 520, 548
Bse1I ACTGG 2 cut(s) 78, 530
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 47, 521
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 19, 520, 548
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 78, 530
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 111, 509, 512
BshFI GGCC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 19, 520, 548
BsnI GGCC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 196, 328, 391, 471
BspACI CCGC 2 cut(s) 503, 506
BspANI GGCC 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 167, 556
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 2 cut(s) 78, 530
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 4 cut(s) 196, 328, 391, 471
BssT1I CCWWGG 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 47, 521
Bst4CI ACNGT 2 cut(s) 183, 243
BstC8I GCNNGC 3 cut(s) 315, 428, 538
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 4 cut(s) 199, 331, 394, 474
BstMBI GATC 4 cut(s) 196, 328, 391, 471
BstMWI GCNNNNNNNGC 4 cut(s) 127, 503, 506, 533
BstNI CCWGG 2 cut(s) 47, 521
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 45, 519
BstV1I GCAGC 3 cut(s) 111, 509, 512
BstXI CCANNNNNNTGG 1 cut(s) 278
BsuI GTATCC 2 cut(s) 49, 341
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 3 cut(s) 85, 239, 469
Cac8I GCNNGC 3 cut(s) 315, 428, 538
CsiI ACCWGGT 1 cut(s) 519
CviAII CATG 1 cut(s) 537
DdeI CTNAG 1 cut(s) 103
DpnI GATC 4 cut(s) 198, 330, 393, 473
DpnII GATC 4 cut(s) 196, 328, 391, 471
DraIII CACNNNGTG 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 543
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 45, 519
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 1 cut(s) 540
FaiI YATR 5 cut(s) 96, 219, 424, 538, 586
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 536
Fnu4HI GCNGC 5 cut(s) 100, 498, 501, 504, 507
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 5 cut(s) 100, 498, 501, 504, 507
FspBI CTAG 1 cut(s) 444
GluI GCNGC 5 cut(s) 100, 498, 501, 504, 507
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 1 cut(s) 540
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 10, 239, 379
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 5 cut(s) 124, 187, 207, 307, 364
Hpy8I GTNNAC 3 cut(s) 10, 239, 379
HpyAV CCTTC 3 cut(s) 338, 362, 520
HpyCH4III ACNGT 2 cut(s) 183, 243
HpyCH4V TGCA 2 cut(s) 497, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 503, 506, 533
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 540
Kzo9I GATC 4 cut(s) 196, 328, 391, 471
LmnI GCTCC 2 cut(s) 171, 532
Lsp1109I GCAGC 3 cut(s) 111, 509, 512
LweI GCATC 1 cut(s) 442
MabI ACCWGGT 1 cut(s) 519
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 245
MalI GATC 4 cut(s) 198, 330, 393, 473
MboI GATC 4 cut(s) 196, 328, 391, 471
MboII GAAGA 1 cut(s) 62
MluCI AATT 4 cut(s) 107, 290, 368, 564
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 3 cut(s) 170, 179, 545
MseI TTAA 3 cut(s) 132, 324, 416
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 47, 521
MvaI CCWGG 2 cut(s) 47, 521
MwoI GCNNNNNNNGC 4 cut(s) 127, 503, 506, 533
NdeII GATC 4 cut(s) 196, 328, 391, 471
NlaIII CATG 1 cut(s) 540
NlaIV GGNNCC 2 cut(s) 167, 556
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 540
OliI CACNNNNGTG 1 cut(s) 276
PaeI GCATGC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 520
PkrI GCNGC 5 cut(s) 101, 499, 502, 505, 508
Psp6I CCWGG 2 cut(s) 45, 519
PspGI CCWGG 2 cut(s) 45, 519
PspN4I GGNNCC 2 cut(s) 167, 556
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 3 cut(s) 132, 324, 416
SatI GCNGC 5 cut(s) 100, 498, 501, 504, 507
Sau3AI GATC 4 cut(s) 196, 328, 391, 471
ScrFI CCNGG 2 cut(s) 47, 521
SetI ASST 8 cut(s) 104, 123, 132, 315, 354, 445, 522, 529
SexAI ACCWGGT 1 cut(s) 519
SfaNI GCATC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 276
SphI GCATGC 1 cut(s) 540
Sse9I AATT 4 cut(s) 107, 290, 368, 564
SsiI CCGC 2 cut(s) 503, 506
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 45, 519
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 2 cut(s) 183, 243
TasI AATT 4 cut(s) 107, 290, 368, 564
TauI GCSGC 2 cut(s) 506, 509
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 132, 324, 416
Tru9I TTAA 3 cut(s) 132, 324, 416
TscAI CASTG 3 cut(s) 85, 246, 469
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 99, 497, 500
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 69, 273, 357
TspRI CASTG 3 cut(s) 85, 246, 469
Van91I CCANNNNNTGG 1 cut(s) 520
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 540
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.