Rh6DG494100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000492
Physical Location & Seq
Reverse (-)
65304896 .. 65307499
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG494100.1

Sequence Viewer

Length: 792 bp
ATGGTAATCCGTAATTCTATTCTTTTTTGGTCTTTCAACTTGGGTTTTCCTTTTCCTTTGTCTAATTTGATTCCACAGGACCAACGACAATATTTAGACTTTACTCTTACAGTCAGTCACTTTATTTCTAATTCCACTTGGAATCACGATGCACTTGCTCAGGTTTTACGCATTGATATTGTTGAAAAAATTGTTGCTATACCTTTGCCTTTATCGCCTAAACCTGATGAGTTTGTTTGGGGACCTGCCCCTTCGAGTATTTTTTCGATAAAGAGTGCATCTTCTCTTCAGTATTCTCATTCTCAACCCCATTCTATGACAAAGTTATTAAATAAGGTTTGGACTTTGAATATACCTCCTAAGGTAAAAAAATTTAGTTGGTTATTTCTAAGAGGTCGTTTAAACACTAGAGTCTACCTTGTAAGGTTTAGACAAAATTTATCTACGCTTTGTCCTTTTTGTAATACTGAAAATGAAACTATTAATCATCTTTTTCATAAATGCCAGTTTGCTTCTCATGTATGGTCTTTTTCTTACCTACTTAATCCTACTCTGTGGCAAGGCAATATTTTCTATTGGTTGATTAGTTTAAGCCGGCAGAAAGAAAGTAAGATTTTGTTATGCAAGACTTTACTTATTTTATGGTCTATTTGGAATACCAGGAATAAACTTCTTTTCCAACATAAACATATTTCTCCAGTTGCAACTTGGTTTGAAGCTTTCTCTTTCGGTTCTGCTTATCAACAACTTAATGTGAAACCCTTAAAATACCCTATACCCACAGTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

263

Amino Acids

30.77

Weight (kDa)

9.91

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 88 - 175 1.1e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 414
AcsI RAATTY 2 cut(s) 371, 436
AcuI CTGAAG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 37, 185, 349, 716
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 1 cut(s) 719
AluI AGCT 1 cut(s) 719
ApoI RAATTY 2 cut(s) 371, 436
AseI ATTAAT 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 79, 242
AvaII GGWCC 2 cut(s) 79, 242
AxyI CCTNAGG 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 1 cut(s) 661
BfaI CTAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 79, 242
BmgT120I GGNCC 2 cut(s) 79, 242
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 139, 287
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 2 cut(s) 505, 698
Bse21I CCTNAGG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 505, 698
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 2 cut(s) 505, 698
BssAI RCCGGY 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 112, 784
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 3 cut(s) 159, 360, 389
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 659
Bsu36I CCTNAGG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 79, 242
CviAII CATG 1 cut(s) 518
CviJI RGCY 2 cut(s) 594, 719
CviKI_1 RGCY 2 cut(s) 594, 719
DdeI CTNAG 3 cut(s) 159, 360, 389
DraI TTTAAA 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 79, 242
Eco57I CTGAAG 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 659
FaeI CATG 1 cut(s) 521
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 517
FblI GTMKAC 1 cut(s) 414
FspBI CTAG 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 681
HapII CCGG 1 cut(s) 595
Hin1II CATG 1 cut(s) 521
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 3 cut(s) 70, 142, 411
HpaII CCGG 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 112, 784
HpyCH4V TGCA 4 cut(s) 152, 278, 624, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 159, 360, 389
Hsp92II CATG 1 cut(s) 521
KroI GCCGGC 1 cut(s) 594
KroNI GCCGGC 1 cut(s) 596
LpnPI CCDG 9 cut(s) 62, 146, 237, 258, 518, 608, 646, 673, 711
LweI GCATC 2 cut(s) 139, 287
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 2 cut(s) 273, 278
MluCI AATT 6 cut(s) 13, 64, 130, 189, 371, 436
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 2 cut(s) 366, 386
MroNI GCCGGC 1 cut(s) 594
MseI TTAA 7 cut(s) 329, 401, 483, 543, 590, 750, 764
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 661
MssI GTTTAAAC 1 cut(s) 402
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 214
NaeI GCCGGC 1 cut(s) 596
NgoMIV GCCGGC 1 cut(s) 594
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 596
PfeI GAWTC 2 cut(s) 70, 142
PleI GAGTC 1 cut(s) 419
PmeI GTTTAAAC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 79, 242
PspPPI RGGWCCY 1 cut(s) 242
SaqAI TTAA 7 cut(s) 329, 401, 483, 543, 590, 750, 764
Sau96I GGNCC 2 cut(s) 79, 242
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 661
SfaNI GCATC 2 cut(s) 139, 287
SinI GGWCC 2 cut(s) 79, 242
Sse9I AATT 6 cut(s) 13, 64, 130, 189, 371, 436
SspI AATATT 2 cut(s) 92, 568
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 659
TaaI ACNGT 2 cut(s) 112, 784
TaqI TCGA 2 cut(s) 254, 266
TasI AATT 6 cut(s) 13, 64, 130, 189, 371, 436
TfiI GAWTC 2 cut(s) 70, 142
Tru1I TTAA 7 cut(s) 329, 401, 483, 543, 590, 750, 764
Tru9I TTAA 7 cut(s) 329, 401, 483, 543, 590, 750, 764
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 485, 489
VpaK11BI GGWCC 2 cut(s) 79, 242
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 2 cut(s) 371, 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.