pycom12g15310

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000492
Physical Location & Seq
Forward (+)
17664311 .. 17664601
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15310.1

Sequence Viewer

Length: 291 bp
ATGGTTTTTTATAAGATTGCAGTGGACTCGAGGGAGGCGGTGGAACTTTTGAGACAACGTTGGAGTGATATTGAATTGGCTGCGGGAGAGGGAGGACAAAAGGCATGTCGACAAGATCCGCAAGTTAGAGGCGATGAGGGTAGCTGGTCTAAACCACCATTTAGGACGATCAAAGTCAATTGTGATGGTGCATGGTGTTCTCGAACTGGAAAGGGGGGTTTTGAATGGGTAGCAAGAGATTTTGCTGGGATTTTTAAAGCTGCTGGAGGGATGGGTAGTGTACTGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

97

Amino Acids

10.51

Weight (kDa)

8.43

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AccI GTMKAC 1 cut(s) 109
AciI CCGC 3 cut(s) 38, 83, 119
AclI AACGTT 1 cut(s) 58
AclWI GGATC 1 cut(s) 110
AfaI GTAC 1 cut(s) 282
AgsI TTSAA 2 cut(s) 74, 224
AluBI AGCT 2 cut(s) 144, 260
AluI AGCT 2 cut(s) 144, 260
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 80, 260
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AvaI CYCGRG 1 cut(s) 28
BbvI GCAGC 2 cut(s) 67, 247
BccI CCATC 2 cut(s) 179, 265
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 289
BisI GCNGC 2 cut(s) 81, 261
BlsI GCNGC 2 cut(s) 82, 262
BmeT110I CYCGRG 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 67, 247
BseYI CCCAGC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 28
Bsp143I GATC 2 cut(s) 115, 168
BspACI CCGC 3 cut(s) 38, 83, 119
BspPI GGATC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 211
BssMI GATC 2 cut(s) 115, 168
Bst4CI ACNGT 1 cut(s) 285
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 2 cut(s) 118, 171
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 115, 168
BstNSI RCATGY 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 67, 247
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 105, 192
CviJI RGCY 3 cut(s) 80, 144, 260
CviKI_1 RGCY 3 cut(s) 80, 144, 260
CviQI GTAC 1 cut(s) 281
DpnI GATC 2 cut(s) 117, 170
DpnII GATC 2 cut(s) 115, 168
DraI TTTAAA 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 28
FaeI CATG 2 cut(s) 108, 195
FaiI YATR 3 cut(s) 12, 106, 193
FatI CATG 2 cut(s) 104, 191
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 81, 261
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 81, 261
FspBI CTAG 1 cut(s) 289
GluI GCNGC 2 cut(s) 81, 261
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 285
Hin1II CATG 2 cut(s) 108, 195
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 3 cut(s) 25, 110, 281
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 3 cut(s) 25, 110, 281
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 20, 191
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 108, 195
Kzo9I GATC 2 cut(s) 115, 168
LpnPI CCDG 4 cut(s) 130, 192, 231, 249
Lsp1109I GCAGC 2 cut(s) 67, 247
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 117, 170
MboI GATC 2 cut(s) 115, 168
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 115
MluCI AATT 2 cut(s) 74, 178
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 7 cut(s) 24, 28, 82, 86, 122, 130, 260
MseI TTAA 1 cut(s) 255
MunI CAATTG 1 cut(s) 178
NdeII GATC 2 cut(s) 115, 168
NlaIII CATG 2 cut(s) 108, 195
NspI RCATGY 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 28
PkrI GCNGC 2 cut(s) 82, 262
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PsiI TTATAA 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 245
PspXI VCTCGAGB 1 cut(s) 28
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SalI GTCGAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 81, 261
Sau3AI GATC 2 cut(s) 115, 168
SchI GAGTC 1 cut(s) 20
SetI ASST 3 cut(s) 61, 146, 262
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 2 cut(s) 74, 178
SsiI CCGC 3 cut(s) 38, 83, 119
SspMI CTAG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 29, 109, 202
TasI AATT 2 cut(s) 74, 178
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 27
TseI GCWGC 2 cut(s) 80, 260
TspRI CASTG 1 cut(s) 27
XceI RCATGY 1 cut(s) 108
XhoI CTCGAG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.