ATMG01250

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0000492
Physical Location & Seq
Forward (+)
310514 .. 310882
369 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01250.1

Sequence Viewer

Length: 369 bp
ATGGGTTATGGAGTGTGTCACTTCTATCTCCTATTCATTATCAATGGAGCCCCTCAAGGTTTAGTCACCCCATCTCGAGGTCTTCGTCAAGGAGATCCACTTTCCCCATACCTCTTTATCCTATGTACGGAGGTGCTCTCAGGATTATGTCGAAGAGCTCAGGAACAAGGACGTTTGCCTGGTATTAGAGTATCAAACAACAGCCCCCGTATCAACCATCTCCTCTTTGCAGATGACACTTCTTCTGCAAGATGGATCCCACTAGCTGCTCAAATCTGGCCGATATTCTTTCTAAGTATGAGGCTGTTTCAGGGCAACCCAGTCAACCACCCGATGTCGAACCTTTACTTTCTCGGCTCACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

9.41

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 10 - 80 2.9e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 89, 250, 263
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 77, 127
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 158, 266
AluI AGCT 2 cut(s) 158, 266
Alw21I GWGCWC 2 cut(s) 138, 160
AlwI GGATC 3 cut(s) 89, 250, 263
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 75
BamHI GGATCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 52, 160
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 138, 160
BbvI GCAGC 1 cut(s) 253
BccI CCATC 3 cut(s) 79, 225, 246
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 49, 257
BmrFI CCNGG 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 127
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 77, 127
BseMII CTCAG 2 cut(s) 153, 173
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 138, 160
BsiHKCI CYCGRG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 77, 127
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 52, 138, 160
Bsp143I GATC 2 cut(s) 94, 255
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 152, 172
BspLI GGNNCC 2 cut(s) 49, 257
BspPI GGATC 3 cut(s) 89, 250, 263
BspQI GCTCTTC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 320
BssMI GATC 2 cut(s) 94, 255
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 139, 159, 293
BstKTI GATC 2 cut(s) 97, 258
BstMBI GATC 2 cut(s) 94, 255
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 94, 255
BstYI RGATCY 2 cut(s) 94, 255
BsuRI GGCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 366
CviJI RGCY 7 cut(s) 50, 158, 204, 266, 280, 304, 357
CviKI_1 RGCY 7 cut(s) 50, 158, 204, 266, 280, 304, 357
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 3 cut(s) 139, 159, 293
DpnI GATC 2 cut(s) 96, 257
DpnII GATC 2 cut(s) 94, 255
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 52, 160
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 52, 160
FaeI CATG 1 cut(s) 369
FaiI YATR 6 cut(s) 9, 109, 124, 148, 299, 367
FatI CATG 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 267
FriOI GRGCYC 2 cut(s) 52, 160
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 1 cut(s) 369
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 75, 141, 161
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 230, 248
HpyF3I CTNAG 3 cut(s) 139, 159, 293
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 369
Kzo9I GATC 2 cut(s) 94, 255
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 126, 146, 165, 192, 262, 296, 333
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 17, 64
MalI GATC 2 cut(s) 96, 257
MboI GATC 2 cut(s) 94, 255
MboII GAAGA 3 cut(s) 74, 165, 234
MflI RGATCY 2 cut(s) 94, 255
MhlI GDGCHC 3 cut(s) 52, 138, 160
MnlI CCTC 6 cut(s) 63, 71, 122, 124, 233, 294
MslI CAYNNNNRTG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 2 cut(s) 94, 255
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 2 cut(s) 49, 257
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 17, 64
PaeR7I CTCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PkrI GCNGC 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 49, 257
PsuI RGATCY 2 cut(s) 94, 255
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 364
SacI GAGCTC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 148
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 94, 255
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 3 cut(s) 52, 138, 160
SetI ASST 8 cut(s) 61, 82, 114, 135, 160, 175, 268, 345
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 54, 75
SmoI CTYRAG 2 cut(s) 54, 75
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 178
TaiI ACGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 76, 151, 338
TseFI GTSAC 2 cut(s) 17, 64
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 2 cut(s) 17, 64
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 75
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.