Prupe.6G308200_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000492
Physical Location & Seq
Forward (+)
27756120 .. 27756848
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G308200.1

Sequence Viewer

Length: 555 bp
ATGGGTTCCATCTCGGAATGGCACATTCGCGACGTTGAGGACGTCACAAAACCATCCCACCCTCGTGTGGGCTTGCTTAAGAAAGTTTGGAAGCTCAACATTCCTCCAAAAGTGAAGAATTTTGTCTGGTTGCTCATTCGTAAAAGACTTCAAGTGAGAGCCAGGCTTCATAGATTCATGCAACATATCAGTCCGATATATCCCTTTTGTCAGAGCTTACCTGAGACTATTCAACACATGTTTATGGACTGTCAGTATGCTAAGGATGTTTGGGCTCTTTCTCCTGATCTCATGCCCCTCCCCTCGCAGGCTGGTGATCTGTACATTTGGCTTCTTTCGCTGAGCCCCACGTCCACAAAGTCAGAATTGGACCCTCTCTCCAAAGCCCTCCTTATCTGTTGGCAAATCTGGGAGGCTAGGAATAATGTGGTGTTCCATGACTCTAAGGCCACCCTAGCTAGCTGTTTTCATGCTGCTGCCTGTGTTGGTTTGGACTTTTGGAGGCTTAACTCGAAGGCCAGACTTGACTCAGCTGACTCCATGATGATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

9.3

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccII CGCG 1 cut(s) 30
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 3 cut(s) 67, 68, 307
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 152, 233
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 63
AluBI AGCT 5 cut(s) 94, 216, 458, 462, 533
AluI AGCT 5 cut(s) 94, 216, 458, 462, 533
Alw26I GTCTC 1 cut(s) 218
AoxI GGCC 2 cut(s) 447, 516
ApeKI GCWGC 2 cut(s) 473, 476
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 458
AvaII GGWCC 1 cut(s) 370
BanII GRGCYC 2 cut(s) 277, 347
BauI CACGAG 1 cut(s) 63
BbvI GCAGC 2 cut(s) 460, 463
BccI CCATC 2 cut(s) 17, 61
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 3 cut(s) 417, 455, 459
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 474, 477
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 2 cut(s) 475, 478
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 370
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 7, 372
BmrFI CCNGG 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 68, 307
BseBI CCWGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 53, 271
BseLI CCNNNNNNNGG 3 cut(s) 67, 68, 307
BseMII CTCAG 3 cut(s) 213, 332, 543
BseXI GCAGC 2 cut(s) 460, 463
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 449, 518
BslI CCNNNNNNNGG 3 cut(s) 67, 68, 307
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 2 cut(s) 449, 518
Bsp1286I GDGCHC 2 cut(s) 277, 347
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 286, 316
Bsp1720I GCTNAGC 1 cut(s) 341
Bsp68I TCGCGA 1 cut(s) 30
BspANI GGCC 2 cut(s) 449, 518
BspCNI CTCAG 3 cut(s) 214, 333, 542
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 7, 372
BspOI GCTAGC 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 321
BssMI GATC 2 cut(s) 286, 316
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 74, 309, 460
BstDEI CTNAG 5 cut(s) 222, 261, 341, 444, 529
BstF5I GGATG 2 cut(s) 53, 271
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 2 cut(s) 289, 319
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 286, 316
BstMWI GCNNNNNNNGC 2 cut(s) 337, 455
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 460, 463
BsuRI GGCC 2 cut(s) 449, 518
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 2 cut(s) 53, 271
BtuMI TCGCGA 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 74, 309, 460
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 322
CviAII CATG 6 cut(s) 178, 238, 292, 437, 470, 541
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 5 cut(s) 222, 261, 341, 444, 529
DpnI GATC 2 cut(s) 288, 318
DpnII GATC 2 cut(s) 286, 316
Eco24I GRGCYC 2 cut(s) 277, 347
Eco47I GGWCC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 161
EcoT38I GRGCYC 2 cut(s) 277, 347
FaeI CATG 6 cut(s) 181, 241, 295, 440, 473, 544
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 6 cut(s) 177, 237, 291, 436, 469, 540
Fnu4HI GCNGC 2 cut(s) 474, 477
FokI GGATG 2 cut(s) 40, 278
FriOI GRGCYC 2 cut(s) 277, 347
Fsp4HI GCNGC 2 cut(s) 474, 477
FspBI CTAG 3 cut(s) 417, 455, 459
GluI GCNGC 2 cut(s) 474, 477
HaeIII GGCC 2 cut(s) 449, 518
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 6 cut(s) 181, 241, 295, 440, 473, 544
HinfI GANTC 4 cut(s) 174, 440, 527, 536
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 4 cut(s) 16, 195, 213, 364
Hpy188III TCNNGA 2 cut(s) 29, 284
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 3 cut(s) 33, 42, 350
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 455
HpyF3I CTNAG 5 cut(s) 222, 261, 341, 444, 529
HpySE526I ACGT 3 cut(s) 33, 42, 350
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 6 cut(s) 181, 241, 295, 440, 473, 544
Kzo9I GATC 2 cut(s) 286, 316
Lsp1109I GCAGC 2 cut(s) 460, 463
MaeI CTAG 3 cut(s) 417, 455, 459
MaeII ACGT 3 cut(s) 33, 42, 350
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 288, 318
MboI GATC 2 cut(s) 286, 316
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 277, 347
MluCI AATT 2 cut(s) 118, 365
MlyI GAGTC 3 cut(s) 434, 521, 530
MnlI CCTC 9 cut(s) 31, 72, 114, 308, 313, 384, 398, 406, 495
MseI TTAA 3 cut(s) 78, 507, 549
MslI CAYNNNNRTG 2 cut(s) 63, 242
MspA1I CMGCKG 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 337, 455
NdeII GATC 2 cut(s) 286, 316
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 6 cut(s) 181, 241, 295, 440, 473, 544
NlaIV GGNNCC 2 cut(s) 7, 372
NmuCI GTSAC 1 cut(s) 43
NruI TCGCGA 1 cut(s) 30
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 63
PciI ACATGT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 475, 478
PleI GAGTC 3 cut(s) 434, 521, 530
PpsI GAGTC 3 cut(s) 434, 521, 530
PscI ACATGT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 7, 372
PspPI GGNCC 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 533
RruI TCGCGA 1 cut(s) 30
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 63, 242
SaqAI TTAA 3 cut(s) 78, 507, 549
SatI GCNGC 2 cut(s) 474, 477
Sau3AI GATC 2 cut(s) 286, 316
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 3 cut(s) 434, 521, 530
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 2 cut(s) 277, 347
SetI ASST 9 cut(s) 36, 45, 96, 218, 223, 353, 460, 464, 535
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 2 cut(s) 63, 242
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 118, 365
SspMI CTAG 3 cut(s) 417, 455, 459
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 3 cut(s) 36, 45, 353
TaqI TCGA 1 cut(s) 512
TasI AATT 2 cut(s) 118, 365
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 3 cut(s) 78, 507, 549
Tru9I TTAA 3 cut(s) 78, 507, 549
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 473, 476
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 158, 166, 458
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 241
XspI CTAG 3 cut(s) 417, 455, 459
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.