FvH4_3g31041

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000492
Physical Location & Seq
Forward (+)
24724929 .. 24726215
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31041.t1

Sequence Viewer

Length: 480 bp
ATGACCAATAATATTGATAAACTAACTAGAGATTTCTTCTGGGGATCAGACATGAAATGTCCTCCTGTAGCTTGGGAACAAGTTTGTCAGCCCAAGGCTGTGGGAGGTCTTGGTATTAGATATGCAGGTTTCTTTAATAATGCAGCTTTAGCAAAGCTTGCTTGGAAAGTCATCTCTAATGCTAGAATTGGTGGTCTCAAATTGTTAGAAAAAGTTTGGACCTTACCAATGTTGTTTCCCCAATTGATTGGGAAGAAGGTTTGGAAAACCAGAAATGAGACAGATTTTAGAGGGGCAACTCCTAATCCCCTCTCAACTACCATGGTAGCAACTTCAATGTCTTCGAGCTGTGTTAACCTTAATAAGAGTCTTAGTGGTGTGCAACTTCTAAACCCGAGTGCCACTATTAAGTGGCCCATCTCTGTAGCATTTATACATGTTGGAAAAACCTCAGTGTGTATTGCAGAGGCGTTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

160

Amino Acids

17.36

Weight (kDa)

9.81

Isoelectric Point (pI)

21.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 1 cut(s) 336
AluBI AGCT 4 cut(s) 71, 146, 157, 348
AluI AGCT 4 cut(s) 71, 146, 157, 348
Alw26I GTCTC 2 cut(s) 200, 272
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 219, 414
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 200, 272
BfaI CTAG 2 cut(s) 27, 183
BfmI CTRYAG 2 cut(s) 66, 423
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 219, 414
BpiI GAAGAC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 93, 321
BseDI CCNNGG 2 cut(s) 93, 321
BseMII CTCAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 200, 272
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 394
Bsp143I GATC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 321
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 93, 321
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 93, 321
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 371, 451
BstDSI CCRYGG 1 cut(s) 321
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 2 cut(s) 200, 272
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNSI RCATGY 1 cut(s) 440
BstSFI CTRYAG 2 cut(s) 66, 423
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 333
BstXI CCANNNNNNTGG 2 cut(s) 100, 248
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 219, 414
CviAII CATG 3 cut(s) 52, 322, 437
CviJI RGCY 7 cut(s) 71, 91, 98, 146, 157, 348, 415
CviKI_1 RGCY 7 cut(s) 71, 91, 98, 146, 157, 348, 415
DdeI CTNAG 2 cut(s) 371, 451
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 93, 321
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 93, 321
ErhI CCWWGG 2 cut(s) 93, 321
FaeI CATG 3 cut(s) 55, 325, 440
FaiI YATR 6 cut(s) 53, 123, 323, 434, 438, 478
FatI CATG 3 cut(s) 51, 321, 436
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 27, 183
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 415
Hin1II CATG 3 cut(s) 55, 325, 440
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 367
HpaI GTTAAC 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 125, 143, 382, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpyF3I CTNAG 2 cut(s) 371, 451
Hsp92II CATG 3 cut(s) 55, 325, 440
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 25, 78, 111, 283
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 2 cut(s) 27, 183
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 3 cut(s) 28, 265, 333
MfeI CAATTG 1 cut(s) 242
MluCI AATT 3 cut(s) 186, 200, 242
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 6 cut(s) 72, 98, 284, 320, 460, 460
MseI TTAA 4 cut(s) 135, 354, 360, 408
MunI CAATTG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NcoI CCATGG 1 cut(s) 321
NdeII GATC 1 cut(s) 44
NlaIII CATG 3 cut(s) 55, 325, 440
NspI RCATGY 1 cut(s) 440
PciI ACATGT 1 cut(s) 436
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PscI ACATGT 1 cut(s) 436
PspPI GGNCC 2 cut(s) 219, 414
SaqAI TTAA 4 cut(s) 135, 354, 360, 408
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 219, 414
SchI GAGTC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 66, 423
SinI GGWCC 1 cut(s) 219
Sse9I AATT 3 cut(s) 186, 200, 242
SspI AATATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 27, 183
StyI CCWWGG 2 cut(s) 93, 321
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 186, 200, 242
Tru1I TTAA 4 cut(s) 135, 354, 360, 408
Tru9I TTAA 4 cut(s) 135, 354, 360, 408
TscAI CASTG 1 cut(s) 459
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 219
XceI RCATGY 1 cut(s) 440
XspI CTAG 2 cut(s) 27, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.