Rmu_sc0007324.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007324.1
OG0000492
Physical Location & Seq
Forward (+)
14731 .. 15774
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007324.1_g000010.1.cds

Sequence Viewer

Length: 1044 bp
atgagatggattgttggagatggtcaggatattatgttttggacatttaattggatttttccttttcctcttattaaccttgttgatacaaatgttagatatcgtgttgatttgaatgagaaagtgtgtgactatattcagaatggttgttggaatgttcctaaacttggacttgttttagatcaaaagactattagtactattcttagtattcctattccttttagtgattttaaggatgagtttgtttggggccctgctgccaatggacaattttctataaaatctgctacttggatgcaatgtagtgatattcaacctcacttgaatgccaagattatgaatgttatttggaaattaaatatccctcccaagacaaaaatctttgcttggctgctagtgaggggtagattgaaaactaaagtaagaattgctcgttttaataacagctttgataccaactgtgatctttgccatttcggtttggaagatattaaccatttattttgctcttgccccttttccgcaagaatttggaatttgtctagactcactgctaactccaatcttctttgcaattttaacaatatctctgattggtttcatcagatttttaacatttcgaaaaatctcacctttattgagaatgctattgtgctttgttggaaaatctggcaagccagaaataatcacatctttaggaacatatctgctgacccgaacatggtggtgcatgctgcagctgcagctgggaattcttatagagctcacaatccttcccacatgaagagatctgttaacaactatggactgatcaggtggcttcccccctctgagaacaaattcaaactcaattttgatggctcaatgaagcatgacaggatggctgcagctggttttgtcattagaaaccatgcttgcatggctcccctgtggtggctggaactaggaagattggcttcactactgttcttgtggcggagtgtagcacgctcaaagatggtctcctccatgcgctgcatctcaactgctctaagattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

347

Amino Acids

40.19

Weight (kDa)

9.66

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 525, 979
AcsI RAATTY 4 cut(s) 531, 538, 754, 842
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 3 cut(s) 167, 724, 936
AgsI TTSAA 5 cut(s) 115, 317, 328, 415, 847
AluBI AGCT 5 cut(s) 450, 743, 749, 767, 893
AluI AGCT 5 cut(s) 450, 743, 749, 767, 893
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 1009
AoxI GGCC 1 cut(s) 253
ApaI GGGCCC 1 cut(s) 257
ApeKI GCWGC 9 cut(s) 260, 394, 737, 740, 743, 746, 887, 890, 1017
ApoI RAATTY 4 cut(s) 531, 538, 754, 842
Asp700I GAANNNNTTC 1 cut(s) 842
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 2 cut(s) 253, 254
AsuHPI GGTGA 1 cut(s) 625
AsuII TTCGAA 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BanII GRGCYC 2 cut(s) 257, 769
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 9 cut(s) 247, 381, 724, 730, 752, 758, 874, 902, 1004
BccI CCATC 4 cut(s) 14, 854, 877, 994
BclI TGATCA 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 4 cut(s) 398, 546, 947, 1042
BfmI CTRYAG 3 cut(s) 738, 744, 888
BglII AGATCT 1 cut(s) 791
BisI GCNGC 9 cut(s) 261, 395, 738, 741, 744, 747, 888, 891, 1018
BlsI GCNGC 9 cut(s) 262, 396, 739, 742, 745, 748, 889, 892, 1019
BmcAI AGTACT 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 253, 254
BmiI GGNNCC 3 cut(s) 254, 255, 927
BmsI GCATC 2 cut(s) 288, 1029
Bpu14I TTCGAA 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 1009
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 724, 936
Bse3DI GCAATG 1 cut(s) 308
BseGI GGATG 3 cut(s) 244, 303, 888
BseLI CCNNNNNNNGG 3 cut(s) 167, 724, 936
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 825
BseRI GAGGAG 1 cut(s) 997
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 9 cut(s) 247, 381, 724, 730, 752, 758, 874, 902, 1004
BseYI CCCAGC 1 cut(s) 749
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 769
BslI CCNNNNNNNGG 3 cut(s) 167, 724, 936
BsmAI GTCTC 1 cut(s) 1009
BsmI GAATGC 2 cut(s) 334, 652
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 1009
Bsp119I TTCGAA 1 cut(s) 623
Bsp120I GGGCCC 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 257, 769
Bsp143I GATC 4 cut(s) 181, 466, 791, 813
BspACI CCGC 2 cut(s) 525, 979
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 826
BspLI GGNNCC 3 cut(s) 254, 255, 927
BspMAI CTGCAG 3 cut(s) 742, 748, 892
BspT104I TTCGAA 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 1009
BsrDI GCAATG 1 cut(s) 308
BssMI GATC 4 cut(s) 181, 466, 791, 813
Bst4CI ACNGT 2 cut(s) 464, 969
Bst6I CTCTTC 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 678, 735, 919, 991
BstDEI CTNAG 3 cut(s) 206, 834, 1034
BstF5I GGATG 3 cut(s) 244, 303, 888
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 4 cut(s) 184, 469, 794, 816
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 4 cut(s) 181, 466, 791, 813
BstMWI GCNNNNNNNGC 3 cut(s) 743, 746, 923
BstNSI RCATGY 1 cut(s) 737
BstSFI CTRYAG 3 cut(s) 738, 744, 888
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 9 cut(s) 247, 381, 724, 730, 752, 758, 874, 902, 1004
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 244, 303, 888
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 4 cut(s) 678, 735, 919, 991
CfoI GCGC 1 cut(s) 1017
Cfr13I GGNCC 2 cut(s) 253, 254
Csp6I GTAC 1 cut(s) 198
CviAII CATG 7 cut(s) 724, 734, 784, 875, 914, 922, 1012
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 3 cut(s) 206, 834, 1034
DpnI GATC 4 cut(s) 183, 468, 793, 815
DpnII GATC 4 cut(s) 181, 466, 791, 813
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
EciI GGCGGA 1 cut(s) 994
Ecl136II GAGCTC 1 cut(s) 767
Eco24I GRGCYC 2 cut(s) 257, 769
Eco31I GGTCTC 1 cut(s) 1009
Eco32I GATATC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 767
EcoO109I RGGNCCY 2 cut(s) 253, 254
EcoRI GAATTC 1 cut(s) 754
EcoRV GATATC 1 cut(s) 101
EcoT38I GRGCYC 2 cut(s) 257, 769
FaeI CATG 7 cut(s) 727, 737, 787, 878, 917, 925, 1015
FalI AAGNNNNNCTT 2 cut(s) 943, 975
FatI CATG 7 cut(s) 723, 733, 783, 874, 913, 921, 1011
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 9 cut(s) 261, 395, 738, 741, 744, 747, 888, 891, 1018
FokI GGATG 3 cut(s) 251, 310, 895
FriOI GRGCYC 2 cut(s) 257, 769
Fsp4HI GCNGC 9 cut(s) 261, 395, 738, 741, 744, 747, 888, 891, 1018
FspBI CTAG 4 cut(s) 398, 546, 947, 1042
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 9 cut(s) 261, 395, 738, 741, 744, 747, 888, 891, 1018
GsaI CCCAGC 1 cut(s) 753
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 1017
Hin1II CATG 7 cut(s) 727, 737, 787, 878, 917, 925, 1015
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 2 cut(s) 549, 1038
HpaI GTTAAC 1 cut(s) 799
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 4 cut(s) 141, 595, 609, 835
Hpy188III TCNNGA 2 cut(s) 26, 546
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 2 cut(s) 464, 969
HpyCH4V TGCA 8 cut(s) 301, 576, 733, 740, 746, 890, 921, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 743, 746, 923
HpyF3I CTNAG 3 cut(s) 206, 834, 1034
Hsp92II CATG 7 cut(s) 727, 737, 787, 878, 917, 925, 1015
HspAI GCGC 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 813
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 4 cut(s) 181, 466, 791, 813
LmnI GCTCC 1 cut(s) 931
Lsp1109I GCAGC 9 cut(s) 247, 381, 724, 730, 752, 758, 874, 902, 1004
LweI GCATC 2 cut(s) 288, 1029
MaeI CTAG 4 cut(s) 398, 546, 947, 1042
MaeIII GTNAC 1 cut(s) 128
MalI GATC 4 cut(s) 183, 468, 793, 815
MboI GATC 4 cut(s) 181, 466, 791, 813
MboII GAAGA 4 cut(s) 500, 560, 799, 963
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 2 cut(s) 257, 769
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 2 cut(s) 131, 644
MnlI CCTC 6 cut(s) 78, 330, 378, 396, 841, 1018
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 9 cut(s) 48, 75, 234, 359, 441, 495, 582, 615, 798
MslI CAYNNNNRTG 2 cut(s) 327, 728
MspA1I CMGCKG 3 cut(s) 743, 749, 893
Mva1269I GAATGC 2 cut(s) 334, 652
MwoI GCNNNNNNNGC 3 cut(s) 743, 746, 923
NdeII GATC 4 cut(s) 181, 466, 791, 813
NlaIII CATG 7 cut(s) 727, 737, 787, 878, 917, 925, 1015
NlaIV GGNNCC 3 cut(s) 254, 255, 927
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 737
NspV TTCGAA 1 cut(s) 623
PaeI GCATGC 1 cut(s) 737
PctI GAATGC 2 cut(s) 334, 652
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 1 cut(s) 1038
PkrI GCNGC 9 cut(s) 262, 396, 739, 742, 745, 748, 889, 892, 1019
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 769
PspFI CCCAGC 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 254, 255, 927
PspOMI GGGCCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 253, 254
PstI CTGCAG 3 cut(s) 742, 748, 892
PsuI RGATCY 1 cut(s) 791
PvuII CAGCTG 3 cut(s) 743, 749, 893
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 327, 728
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 9 cut(s) 48, 75, 234, 359, 441, 495, 582, 615, 798
SatI GCNGC 9 cut(s) 261, 395, 738, 741, 744, 747, 888, 891, 1018
Sau3AI GATC 4 cut(s) 181, 466, 791, 813
Sau96I GGNCC 2 cut(s) 253, 254
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 543
SduI GDGCHC 2 cut(s) 257, 769
SetI ASST 9 cut(s) 81, 322, 452, 638, 745, 751, 769, 821, 895
SfaNI GCATC 2 cut(s) 288, 1029
SfcI CTRYAG 3 cut(s) 738, 744, 888
SfuI TTCGAA 1 cut(s) 623
SmiMI CAYNNNNRTG 2 cut(s) 327, 728
SphI GCATGC 1 cut(s) 737
SsiI CCGC 2 cut(s) 525, 979
SspMI CTAG 4 cut(s) 398, 546, 947, 1042
SstI GAGCTC 1 cut(s) 769
TaaI ACNGT 2 cut(s) 464, 969
TaqI TCGA 1 cut(s) 623
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 1038
Tru1I TTAA 9 cut(s) 48, 75, 234, 359, 441, 495, 582, 615, 798
Tru9I TTAA 9 cut(s) 48, 75, 234, 359, 441, 495, 582, 615, 798
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 9 cut(s) 260, 394, 737, 740, 743, 746, 887, 890, 1017
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 4 cut(s) 356, 593, 800, 884
TspRI CASTG 1 cut(s) 559
XapI RAATTY 4 cut(s) 531, 538, 754, 842
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 4 cut(s) 398, 546, 947, 1042
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.