Rorug07G0136100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000492
Physical Location & Seq
Reverse (-)
10667845 .. 10672435
4591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0136100.1

Sequence Viewer

Length: 2127 bp
ATGGCTTCCGAGAGGGAATGTTTTGAACTTTCAGGACCATTACACCTAACTTCCGTGGACTGGGAAAACACTCATCATCAAAGGTCTGTTGCTGCTAGTTTGGTTCAGGGTGTCTACATTGTTGAGCGCGACCGCCAAGAGAAGCGGGAAGGTTCTGAGGCCCTTGCTCCTCCTTGGTGGGAGTTCTTTCATTTTAAGTTGCTCCGTAAACTAGTGGATGATGTTGGTTTTTCCATCTTTGGTGCTGTTTATGAATTCAAGCCTCCTCCGTCCATTCGTCACCACTCACTGGAGGGAAGACCTTGTTTTGTAATTGCCTTCCGAGGCACCTTGACCAAGTCTGACTCCGTCTCACGAGATCTTGAGTTGGATGTTGAGGTCATCCGCAATGGACTTCACCGAACGTCTCGTTTTGAGATTGCTATACAAGCTGTCAGAAATATGGTTGCTGCTGTAGGGGATTCAAATGTTTGGTTAGCTGGCCATTCCTTAGGGTCATCCATGGCAATGCTTGCTGGGAAAACTATGGCCAAGAATGGCGTTTTTCTCAAGTCTTTTCTCTTTAATCCACCATTTGTTTCTGCCCCGATTGAGAGGATTAAGGATAAGAATGTGAAGCATGGGATTCGATTTGCAGGCAGCGTAATTACTGCAGGACTCTCTTTCGCCATGAAGGCTAAACAAAAGCAACATCAGGGAAATCGGTCCGTTGAAGACCCATTCACTACTCTGTCCTCATGGTTCCCTTGTCTGTTTGTCAATCCAGGTGATGACATCTGCTCGGAATATATTGGTTATTTTGAGCATAGGAAGAGGATGGAGCAGATTGGAGCTGGGGCCATTGAGAGGTTAGCTACCCAGAATTCGCTTGGAGGTCTACTAATGCATGCAATGGGAAAAGCCTCAGATTCTGAGCCAGCATTGCACCTCATCCCTTCTGCCAACCTGACCGTTAATTTAACCCCTCCGCGGGATCTCAAAGAAGCTCATGGAATTCACCAATGGTGGGCAGACAAGAAAGGGTATACCAAGAGCAAGCTTAGAGAGCAACGTTGGTGTCAAATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGGACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTCAGGGTGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGACCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTCAAGTTGCTTCGTCCACTGGTGGATGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTCCTCATGCTCCTCCTTTCTCTTCTCTTGGTACAGAACATTCACTATTGGAAGATGAAAACAGCCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCGTATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATGGACTTCACAAGACATCTCGCTTTAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGAAAGCAGGTGATTCATTAAGCGTTTGGCTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTTTGTTGCCCCGATGGAGAGGATCAAGCAGGAGAATATCAAGCTTGGTATTCGCTTTGCTCGAAGTGTGTTCACTGCAGGACTCGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAATCAAGGTGACGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGAGCAGGAGGCATTGAGAGGTTAGCAACCCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTTGTGCAAACCTCACAGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGGAATTCGACAATGGTGGCTAGAGAATCAGCACTTGCAGTCTGAGACTTACAGATACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

708

Amino Acids

79.55

Weight (kDa)

8.85

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1538
Acc36I ACCTGC 1 cut(s) 1538
AccB1I GGYRCC 3 cut(s) 326, 1307, 1418
AccB7I CCANNNNNTGG 2 cut(s) 289, 1585
AccI GTMKAC 3 cut(s) 114, 877, 1025
AccII CGCG 4 cut(s) 129, 970, 1430, 1447
AciI CCGC 7 cut(s) 133, 145, 385, 968, 970, 1195, 1428
AclI AACGTT 1 cut(s) 1051
AclWI GGATC 3 cut(s) 981, 1703, 1790
AcoI YGGCCR 4 cut(s) 481, 528, 1576, 1623
AcsI RAATTY 6 cut(s) 254, 862, 993, 1942, 2047, 2067
AfaI GTAC 1 cut(s) 1360
AgsI TTSAA 9 cut(s) 26, 259, 465, 713, 1258, 1660, 1947, 2043, 2053
AhlI ACTAGT 1 cut(s) 211
AjnI CCWGG 3 cut(s) 763, 1437, 1778
Alw26I GTCTC 5 cut(s) 355, 411, 1447, 1976, 2102
AlwI GGATC 3 cut(s) 981, 1703, 1790
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 1 cut(s) 1217
AoxI GGCC 7 cut(s) 159, 481, 528, 837, 1221, 1576, 1623
ApeKI GCWGC 4 cut(s) 92, 449, 639, 1154
ApoI RAATTY 6 cut(s) 254, 862, 993, 1942, 2047, 2067
Asp700I GAANNNNTTC 1 cut(s) 1821
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 7 cut(s) 35, 160, 705, 837, 1097, 1192, 1214
AsuHPI GGTGA 6 cut(s) 272, 389, 779, 989, 1562, 1859
AsuII TTCGAA 1 cut(s) 1881
AsuNHI GCTAGC 1 cut(s) 1570
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 5 cut(s) 35, 705, 1097, 1192, 1214
AxyI CCTNAGG 1 cut(s) 490
BalI TGGCCA 4 cut(s) 483, 530, 1578, 1625
BanI GGYRCC 3 cut(s) 326, 1307, 1418
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 304, 720
BbvI GCAGC 4 cut(s) 79, 436, 651, 1141
BccI CCATC 4 cut(s) 242, 811, 1681, 1891
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 3 cut(s) 765, 1439, 1780
BclI TGATCA 1 cut(s) 1135
BcoDI GTCTC 5 cut(s) 355, 411, 1447, 1976, 2102
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 5 cut(s) 96, 212, 1571, 1827, 2084
BfmI CTRYAG 3 cut(s) 453, 651, 1749
BfuAI ACCTGC 1 cut(s) 1538
BglI GCCNNNNNGGC 1 cut(s) 674
BglII AGATCT 2 cut(s) 358, 1450
BisI GCNGC 4 cut(s) 93, 450, 640, 1155
BlsI GCNGC 4 cut(s) 94, 451, 641, 1156
Bme1390I CCNGG 3 cut(s) 765, 1439, 1780
Bme18I GGWCC 5 cut(s) 35, 705, 1097, 1192, 1214
BmeT110I CYCGRG 1 cut(s) 1217
BmgT120I GGNCC 7 cut(s) 35, 160, 705, 837, 1097, 1192, 1214
BmiI GGNNCC 9 cut(s) 328, 743, 838, 1216, 1230, 1297, 1309, 1420, 1824
BmrFI CCNGG 3 cut(s) 765, 1439, 1780
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 1087, 1273
BmtI GCTAGC 1 cut(s) 1574
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 2 cut(s) 304, 720
BpmI CTGGAG 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 1881
BpuEI CTTGAG 4 cut(s) 383, 533, 1205, 1451
BsaBI GATNNNNATC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 1447
Bse1I ACTGG 6 cut(s) 65, 294, 1127, 1158, 1278, 1287
Bse21I CCTNAGG 1 cut(s) 490
Bse3DI GCAATG 5 cut(s) 394, 513, 897, 920, 1608
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 3 cut(s) 765, 1439, 1780
BseGI GGATG 7 cut(s) 223, 376, 381, 497, 822, 930, 1285
BseJI GATNNNNATC 1 cut(s) 1077
BseMI GCAATG 5 cut(s) 394, 513, 897, 920, 1608
BseMII CTCAG 4 cut(s) 147, 903, 918, 2097
BseNI ACTGG 6 cut(s) 65, 294, 1127, 1158, 1278, 1287
BseRI GAGGAG 5 cut(s) 159, 255, 1221, 1320, 1329
BseXI GCAGC 4 cut(s) 79, 436, 651, 1141
BseYI CCCAGC 2 cut(s) 515, 833
Bsh1236I CGCG 4 cut(s) 129, 970, 1430, 1447
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 7 cut(s) 161, 483, 530, 839, 1223, 1578, 1625
BshNI GGYRCC 3 cut(s) 326, 1307, 1418
BsiEI CGRYCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 1217
BslFI GGGAC 1 cut(s) 1447
BsmAI GTCTC 5 cut(s) 355, 411, 1447, 1976, 2102
BsmBI CGTCTC 2 cut(s) 355, 411
BsmFI GGGAC 1 cut(s) 1447
BsnI GGCC 7 cut(s) 161, 483, 530, 839, 1223, 1578, 1625
Bso31I GGTCTC 1 cut(s) 1447
BsoBI CYCGRG 1 cut(s) 1217
Bsp119I TTCGAA 1 cut(s) 1881
Bsp143I GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
Bsp19I CCATGG 3 cut(s) 501, 1584, 2062
Bsp68I TCGCGA 1 cut(s) 1447
BspACI CCGC 7 cut(s) 133, 145, 385, 968, 970, 1195, 1428
BspANI GGCC 7 cut(s) 161, 483, 530, 839, 1223, 1578, 1625
BspCNI CTCAG 4 cut(s) 148, 904, 917, 2098
BspFNI CGCG 4 cut(s) 129, 970, 1430, 1447
BspLI GGNNCC 9 cut(s) 328, 743, 838, 1216, 1230, 1297, 1309, 1420, 1824
BspMAI CTGCAG 2 cut(s) 655, 1753
BspMI ACCTGC 1 cut(s) 1538
BspOI GCTAGC 1 cut(s) 1574
BspPI GGATC 3 cut(s) 981, 1703, 1790
BspT104I TTCGAA 1 cut(s) 1881
BspT107I GGYRCC 3 cut(s) 326, 1307, 1418
BspTNI GGTCTC 1 cut(s) 1447
BsrDI GCAATG 5 cut(s) 394, 513, 897, 920, 1608
BsrI ACTGG 6 cut(s) 65, 294, 1127, 1158, 1278, 1287
BssMI GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
BssNAI GTATAC 1 cut(s) 1026
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 7 cut(s) 173, 501, 1224, 1235, 1584, 1626, 2062
Bst1107I GTATAC 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 3 cut(s) 765, 1439, 1780
Bst4CI ACNGT 4 cut(s) 952, 1133, 1537, 2026
Bst6I CTCTTC 3 cut(s) 806, 1354, 1661
BstAPI GCANNNNNTGC 2 cut(s) 512, 1607
BstBI TTCGAA 1 cut(s) 1881
BstDEI CTNAG 6 cut(s) 156, 490, 904, 912, 1040, 2106
BstDSI CCRYGG 6 cut(s) 54, 501, 968, 1414, 1584, 2062
BstF5I GGATG 7 cut(s) 223, 376, 381, 497, 822, 930, 1285
BstFNI CGCG 4 cut(s) 129, 970, 1430, 1447
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 6 cut(s) 361, 976, 1138, 1453, 1698, 1798
BstMAI GTCTC 5 cut(s) 355, 411, 1447, 1976, 2102
BstMBI GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
BstMCI CGRYCG 1 cut(s) 133
BstNI CCWGG 3 cut(s) 765, 1439, 1780
BstNSI RCATGY 1 cut(s) 890
BstSCI CCNGG 3 cut(s) 763, 1437, 1778
BstSFI CTRYAG 3 cut(s) 453, 651, 1749
BstUI CGCG 4 cut(s) 129, 970, 1430, 1447
BstV1I GCAGC 4 cut(s) 79, 436, 651, 1141
BstV2I GAAGAC 2 cut(s) 304, 720
BstX2I RGATCY 4 cut(s) 358, 973, 1450, 1795
BstYI RGATCY 4 cut(s) 358, 973, 1450, 1795
BstZ17I GTATAC 1 cut(s) 1026
Bsu36I CCTNAGG 1 cut(s) 490
BsuRI GGCC 7 cut(s) 161, 483, 530, 839, 1223, 1578, 1625
BtgI CCRYGG 6 cut(s) 54, 501, 968, 1414, 1584, 2062
BtsCI GGATG 7 cut(s) 223, 376, 381, 497, 822, 930, 1285
BtsI GCAGTG 1 cut(s) 1746
BtsIMutI CAGTG 4 cut(s) 287, 1138, 1271, 1746
BtuMI TCGCGA 1 cut(s) 1447
BveI ACCTGC 1 cut(s) 1538
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 7 cut(s) 35, 160, 705, 837, 1097, 1192, 1214
Cfr42I CCGCGG 1 cut(s) 971
CpoI CGGWCCG 1 cut(s) 705
CsiI ACCWGGT 2 cut(s) 1437, 1778
Csp6I GTAC 1 cut(s) 1359
CspI CGGWCCG 1 cut(s) 705
CviAII CATG 9 cut(s) 502, 620, 670, 738, 887, 989, 1334, 1585, 2063
CviQI GTAC 1 cut(s) 1359
DdeI CTNAG 6 cut(s) 156, 490, 904, 912, 1040, 2106
DpnI GATC 6 cut(s) 360, 975, 1137, 1452, 1697, 1797
DpnII GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
DraI TTTAAA 1 cut(s) 1324
EaeI YGGCCR 4 cut(s) 481, 528, 1576, 1623
Eam1104I CTCTTC 3 cut(s) 806, 1354, 1661
EarI CTCTTC 3 cut(s) 806, 1354, 1661
Eco130I CCWWGG 7 cut(s) 173, 501, 1224, 1235, 1584, 1626, 2062
Eco147I AGGCCT 1 cut(s) 1223
Eco31I GGTCTC 1 cut(s) 1447
Eco47I GGWCC 5 cut(s) 35, 705, 1097, 1192, 1214
Eco81I CCTNAGG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 1217
EcoO109I RGGNCCY 2 cut(s) 160, 1214
EcoRI GAATTC 5 cut(s) 254, 862, 993, 1942, 2067
EcoRII CCWGG 3 cut(s) 763, 1437, 1778
EcoT14I CCWWGG 7 cut(s) 173, 501, 1224, 1235, 1584, 1626, 2062
EcoT22I ATGCAT 1 cut(s) 888
ErhI CCWWGG 7 cut(s) 173, 501, 1224, 1235, 1584, 1626, 2062
Esp3I CGTCTC 2 cut(s) 355, 411
FaeI CATG 9 cut(s) 505, 623, 673, 741, 890, 992, 1337, 1588, 2066
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 1 cut(s) 1447
FatI CATG 9 cut(s) 501, 619, 669, 737, 886, 988, 1333, 1584, 2062
FauI CCCGC 2 cut(s) 138, 963
FbaI TGATCA 1 cut(s) 1135
FblI GTMKAC 3 cut(s) 114, 877, 1025
Fnu4HI GCNGC 4 cut(s) 93, 450, 640, 1155
FokI GGATG 7 cut(s) 230, 368, 383, 484, 829, 917, 1292
Fsp4HI GCNGC 4 cut(s) 93, 450, 640, 1155
FspBI CTAG 5 cut(s) 96, 212, 1571, 1827, 2084
GlaI GCGC 1 cut(s) 128
GluI GCNGC 4 cut(s) 93, 450, 640, 1155
GsaI CCCAGC 2 cut(s) 519, 837
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 7 cut(s) 161, 483, 530, 839, 1223, 1578, 1625
HhaI GCGC 1 cut(s) 129
Hin1II CATG 9 cut(s) 505, 623, 673, 741, 890, 992, 1337, 1588, 2066
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 1037, 1715
HphI GGTGA 6 cut(s) 272, 389, 779, 989, 1562, 1859
Hpy166II GTNNAC 7 cut(s) 58, 115, 209, 878, 1026, 1271, 1746
Hpy188III TCNNGA 7 cut(s) 33, 354, 362, 1095, 1184, 1446, 1863
Hpy8I GTNNAC 7 cut(s) 58, 115, 209, 878, 1026, 1271, 1746
HpyAV CCTTC 7 cut(s) 143, 328, 667, 945, 1205, 1420, 2049
HpyCH4III ACNGT 4 cut(s) 952, 1133, 1537, 2026
HpyCH4IV ACGT 2 cut(s) 404, 1051
HpyF3I CTNAG 6 cut(s) 156, 490, 904, 912, 1040, 2106
HpySE526I ACGT 2 cut(s) 404, 1051
Hsp92II CATG 9 cut(s) 505, 623, 673, 741, 890, 992, 1337, 1588, 2066
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 1135
KspI CCGCGG 1 cut(s) 971
Kzo9I GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
LmnI GCTCC 7 cut(s) 172, 207, 820, 830, 1234, 1342, 1910
Lsp1109I GCAGC 4 cut(s) 79, 436, 651, 1141
LweI GCATC 2 cut(s) 1087, 1273
MabI ACCWGGT 2 cut(s) 1437, 1778
MaeI CTAG 5 cut(s) 96, 212, 1571, 1827, 2084
MaeII ACGT 2 cut(s) 404, 1051
MaeIII GTNAC 2 cut(s) 278, 1847
MalI GATC 6 cut(s) 360, 975, 1137, 1452, 1697, 1797
MboI GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
MfeI CAATTG 1 cut(s) 1947
MflI RGATCY 4 cut(s) 358, 973, 1450, 1795
MlsI TGGCCA 4 cut(s) 483, 530, 1578, 1625
MluNI TGGCCA 4 cut(s) 483, 530, 1578, 1625
MlyI GAGTC 3 cut(s) 338, 651, 1749
MmeI TCCRAC 1 cut(s) 348
Mox20I TGGCCA 4 cut(s) 483, 530, 1578, 1625
Mph1103I ATGCAT 1 cut(s) 888
MroXI GAANNNNTTC 1 cut(s) 1821
MscI TGGCCA 4 cut(s) 483, 530, 1578, 1625
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 4 cut(s) 483, 530, 1578, 1625
MspA1I CMGCKG 1 cut(s) 970
MspR9I CCNGG 3 cut(s) 765, 1439, 1780
MssI GTTTAAAC 1 cut(s) 1324
MunI CAATTG 1 cut(s) 1947
MvaI CCWGG 3 cut(s) 765, 1439, 1780
MvnI CGCG 4 cut(s) 129, 970, 1430, 1447
NcoI CCATGG 3 cut(s) 501, 1584, 2062
NdeII GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
NheI GCTAGC 1 cut(s) 1570
NlaIII CATG 9 cut(s) 505, 623, 673, 741, 890, 992, 1337, 1588, 2066
NlaIV GGNNCC 9 cut(s) 328, 743, 838, 1216, 1230, 1297, 1309, 1420, 1824
NmuCI GTSAC 2 cut(s) 278, 1847
NruI TCGCGA 1 cut(s) 1447
NsiI ATGCAT 1 cut(s) 888
NspI RCATGY 1 cut(s) 890
NspV TTCGAA 1 cut(s) 1881
PaeI GCATGC 1 cut(s) 890
PaqCI CACCTGC 1 cut(s) 1538
PceI AGGCCT 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 1732
PdmI GAANNNNTTC 1 cut(s) 1821
PfeI GAWTC 7 cut(s) 461, 625, 908, 1553, 1635, 1840, 2089
PflFI GACNNNGTC 3 cut(s) 337, 347, 1439
PflMI CCANNNNNTGG 2 cut(s) 289, 1585
PkrI GCNGC 4 cut(s) 94, 451, 641, 1156
PleI GAGTC 3 cut(s) 338, 651, 1749
PmeI GTTTAAAC 1 cut(s) 1324
PpsI GAGTC 3 cut(s) 338, 651, 1749
PpuMI RGGWCCY 1 cut(s) 1214
Psp1406I AACGTT 1 cut(s) 1051
Psp5II RGGWCCY 1 cut(s) 1214
Psp6I CCWGG 3 cut(s) 763, 1437, 1778
PspFI CCCAGC 2 cut(s) 515, 833
PspGI CCWGG 3 cut(s) 763, 1437, 1778
PspN4I GGNNCC 9 cut(s) 328, 743, 838, 1216, 1230, 1297, 1309, 1420, 1824
PspPI GGNCC 7 cut(s) 35, 160, 705, 837, 1097, 1192, 1214
PspPPI RGGWCCY 1 cut(s) 1214
PstI CTGCAG 2 cut(s) 655, 1753
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 4 cut(s) 358, 973, 1450, 1795
PsyI GACNNNGTC 3 cut(s) 337, 347, 1439
RruI TCGCGA 1 cut(s) 1447
RsaI GTAC 1 cut(s) 1360
RsaNI GTAC 1 cut(s) 1359
RseI CAYNNNNRTG 1 cut(s) 506
Rsr2I CGGWCCG 1 cut(s) 705
RsrII CGGWCCG 1 cut(s) 705
SacII CCGCGG 1 cut(s) 971
SatI GCNGC 4 cut(s) 93, 450, 640, 1155
Sau3AI GATC 6 cut(s) 358, 973, 1135, 1450, 1695, 1795
Sau96I GGNCC 7 cut(s) 35, 160, 705, 837, 1097, 1192, 1214
SchI GAGTC 3 cut(s) 338, 651, 1749
ScrFI CCNGG 3 cut(s) 765, 1439, 1780
SexAI ACCWGGT 2 cut(s) 1437, 1778
SfaNI GCATC 2 cut(s) 1087, 1273
SfcI CTRYAG 3 cut(s) 453, 651, 1749
Sfr303I CCGCGG 1 cut(s) 971
SfuI TTCGAA 1 cut(s) 1881
SgrBI CCGCGG 1 cut(s) 971
SinI GGWCC 5 cut(s) 35, 705, 1097, 1192, 1214
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 4 cut(s) 362, 548, 1184, 1466
SmoI CTYRAG 4 cut(s) 362, 548, 1184, 1466
SpeI ACTAGT 1 cut(s) 211
SphI GCATGC 1 cut(s) 890
SseBI AGGCCT 1 cut(s) 1223
SsiI CCGC 7 cut(s) 133, 145, 385, 968, 970, 1195, 1428
SspMI CTAG 5 cut(s) 96, 212, 1571, 1827, 2084
StuI AGGCCT 1 cut(s) 1223
StyD4I CCNGG 3 cut(s) 763, 1437, 1778
StyI CCWWGG 7 cut(s) 173, 501, 1224, 1235, 1584, 1626, 2062
TaaI ACNGT 4 cut(s) 952, 1133, 1537, 2026
TaiI ACGT 2 cut(s) 407, 1054
TaqI TCGA 4 cut(s) 628, 1735, 1881, 2071
TaqII GACCGA 2 cut(s) 693, 1796
TfiI GAWTC 7 cut(s) 461, 625, 908, 1553, 1635, 1840, 2089
TscAI CASTG 4 cut(s) 294, 1138, 1278, 1753
TseFI GTSAC 2 cut(s) 278, 1847
TseI GCWGC 4 cut(s) 92, 449, 639, 1154
Tsp45I GTSAC 2 cut(s) 278, 1847
TspDTI ATGAA 6 cut(s) 179, 267, 686, 1398, 1545, 1830
TspGWI ACGGA 7 cut(s) 43, 194, 258, 337, 697, 1403, 1647
TspRI CASTG 4 cut(s) 294, 1138, 1278, 1753
Tth111I GACNNNGTC 3 cut(s) 337, 347, 1439
Van91I CCANNNNNTGG 2 cut(s) 289, 1585
VpaK11BI GGWCC 5 cut(s) 35, 705, 1097, 1192, 1214
XapI RAATTY 6 cut(s) 254, 862, 993, 1942, 2047, 2067
XceI RCATGY 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 3 cut(s) 866, 1535, 1946
XmiI GTMKAC 3 cut(s) 114, 877, 1025
XmnI GAANNNNTTC 1 cut(s) 1821
XspI CTAG 5 cut(s) 96, 212, 1571, 1827, 2084
Zsp2I ATGCAT 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.