FvH4_5g21911

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000492
Physical Location & Seq
Reverse (-)
13271803 .. 13277498
5696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21911.t1

Sequence Viewer

Length: 1605 bp
ATGGGAGACTTTAACATTATTCTCCATCCCTCGGAAAAGTTGGGGGGTTTAAGTAGAACTACTAGATACATGGTAGATTTTGGAACTTTTTTGAACAATATTAATATGTGTTCAGTCCCAAGTAATGGAGTTTCTTTTACTTGGACTAATAATCACAGGGATCACACTGTGATTTATGAAAAGTTGGTTAGAGTTTGTGCTAACTGGTTGTTGCAATTTCCAGATGTGGAAGTAGAGAACCTTCCCATTACTGGTTCAGATCATGGCCCTATCTGTGTTTCTTGGAACCATAGAAGACCTAAAATGCACAGGTCTTTGAAGTTTGAGGCTATTTGGTTATCTCACCCTCTTTTAAAACAATTGGTTGCAGATTCTTGGCATGAAGTTGTGGATGATGATCCTTTGAAAATTTTTGTTACAGTCTGTGGGAAGTTTGCAACTCTTGCTCAAGTTTGGAATAAAAATGTCGTTGGAAATCTGACACGACCCACCCCGAATTTCACCCTGAAATTCGGAGTGAAGAAGAAAGCTTCTTCTTCTCTAGCTTGGAAAAGAATTCTGGATATGAGAGAGCTTCTTCAAAGAGGAATCCAATGGACTGTAGGAAATGGCTCAGACATTGCTTTCTGGACGTTCAATTGGGTACTACATTTCCCTCTTATTAATCTTATTGATGATATTAGACGTGCTAATATTGATTGGAATGAGTTTGTGGCTGACTATATGTCTAATAAAAATTGGAATAGAGATAAATTGCTCACAGTTCTTGACATGAATATTGTTGATCAGATTTGTGGTATACCAATTCCCAAGAATAATCAGGCAGACTCTTTTGTTTGGGGTTTTAGTCCTAATGGAGAATTTACAGTTAAATCTGCGACTTGGATTCAAAATAATGAGACTAAGAGCCATGAGTTCTCTCCTTTGATACGGAAAGTTTGGAAATCAGATTTGGCTCCGAAAATCAAAATTTTTAGTTGGCTTCTTTTAAGAGGAAGGGGTATTTCTATAAATAGGCCGTTTGATGCGGCTAAGTTTGGAAAAATTCTTACTCTTTGTTGGCAGATTTGGCAGAAGCGTAATGATTGTGTCTTCAAAAACAAGAACTTTTCTCCCTATGCAGCTATTAATTTGGATGGTTTGGTGTTGCAACAAAGTTCTGATAATGCTGTTGATTTCATTTTGAAAGACGACTCTGGATGCCCTGTGTTAGCCTCTGCCCATAAGATTGGGAAGACAACCATTCCCATTGCAGAAGCTATTGCGCTCAAGGATAGTCTCCTCACTGCTCTAGAGTTGGGGTTCCATAATGTTTTGGTTAAAGGTGACTCCTTGCTGGTTATCAATTGTGTTATTGAAAAGTTCAAGTGCCCTTGGAGACTCATTCAGCTTATCCAAGATATCAGAAGGCTAGCTAGTTCGTTTCAAAGCATATCTTTTCGGCATGTCTTCAGAGAGGCTAACTTCACGGCCAACGCGCTTGCCAACTTTGGTCACCAAATTTCAAGTCCTTGTCGTTGGGAGTCAAGCTTTCCTCCGGTTGTAAGGCAGGCCATTAATTTTGACCTCTTTAGAGTTGGGTGCTCCCGAGGTTCTGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

535

Amino Acids

60.9

Weight (kDa)

9.28

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 377 - 497 1.1e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccI GTMKAC 1 cut(s) 799
AccII CGCG 1 cut(s) 1478
AciI CCGC 1 cut(s) 1028
AclWI GGATC 2 cut(s) 168, 392
AcoI YGGCCR 1 cut(s) 1470
AcsI RAATTY 8 cut(s) 408, 496, 509, 555, 860, 969, 1044, 1500
AcuI CTGAAG 1 cut(s) 1435
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 3 cut(s) 31, 125, 251
AhdI GACNNNNNGTC 1 cut(s) 724
AjiI CACGTC 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 8 cut(s) 530, 545, 574, 1124, 1259, 1390, 1415, 1530
AluI AGCT 8 cut(s) 530, 545, 574, 1124, 1259, 1390, 1415, 1530
Alw21I GWGCWC 1 cut(s) 1586
Alw26I GTCTC 3 cut(s) 893, 1283, 1372
AlwI GGATC 2 cut(s) 168, 392
Ama87I CYCGRG 1 cut(s) 1587
AoxI GGCC 4 cut(s) 265, 1016, 1470, 1551
ApeKI GCWGC 1 cut(s) 1121
ApoI RAATTY 8 cut(s) 408, 496, 509, 555, 860, 969, 1044, 1500
ArsI GACNNNNNNTTYG 2 cut(s) 1492, 1524
AseI ATTAAT 4 cut(s) 102, 663, 1128, 1557
AspLEI GCGC 2 cut(s) 1267, 1480
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 4 cut(s) 335, 493, 1337, 1487
AsuNHI GCTAGC 1 cut(s) 1411
AvaI CYCGRG 1 cut(s) 1587
BaeGI GKGCMC 1 cut(s) 1373
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 4 cut(s) 301, 1084, 1241, 1441
Bbv12I GWGCWC 1 cut(s) 1586
BbvI GCAGC 1 cut(s) 1133
BccI CCATC 2 cut(s) 33, 1130
BceAI ACGGC 2 cut(s) 1003, 1485
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 3 cut(s) 893, 1283, 1372
BfaI CTAG 5 cut(s) 63, 542, 1292, 1412, 1416
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 2 cut(s) 1029, 1122
BlsI GCNGC 2 cut(s) 1030, 1123
BmeRI GACNNNNNGTC 1 cut(s) 724
BmeT110I CYCGRG 1 cut(s) 1587
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 287, 957, 1304
BmsI GCATC 2 cut(s) 1015, 1190
BmtI GCTAGC 1 cut(s) 1415
BpiI GAAGAC 4 cut(s) 301, 1084, 1241, 1441
BpuEI CTTGAG 2 cut(s) 432, 1253
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 30, 1373, 1588
BsaWI WCCGGW 1 cut(s) 1537
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 125, 251
Bse1I ACTGG 2 cut(s) 209, 256
Bse3DI GCAATG 2 cut(s) 618, 1248
Bse8I GATNNNNATC 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 30, 1373, 1588
BseGI GGATG 4 cut(s) 25, 397, 1141, 1205
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 31, 125, 251
BseMI GCAATG 2 cut(s) 618, 1248
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 2 cut(s) 209, 256
BseRI GAGGAG 1 cut(s) 1271
BseSI GKGCMC 1 cut(s) 1373
BseXI GCAGC 1 cut(s) 1133
Bsh1236I CGCG 1 cut(s) 1478
BshFI GGCC 4 cut(s) 267, 1018, 1472, 1553
BsiHKAI GWGCWC 1 cut(s) 1586
BsiHKCI CYCGRG 1 cut(s) 1587
BsiSI CCGG 1 cut(s) 1538
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 31, 125, 251
BsmAI GTCTC 3 cut(s) 893, 1283, 1372
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 4 cut(s) 267, 1018, 1472, 1553
BsoBI CYCGRG 1 cut(s) 1587
Bsp1286I GDGCHC 2 cut(s) 1373, 1586
Bsp143I GATC 4 cut(s) 160, 259, 397, 784
BspACI CCGC 1 cut(s) 1028
BspANI GGCC 4 cut(s) 267, 1018, 1472, 1553
BspCNI CTCAG 1 cut(s) 626
BspFNI CGCG 1 cut(s) 1478
BspLI GGNNCC 3 cut(s) 287, 957, 1304
BspOI GCTAGC 1 cut(s) 1415
BspPI GGATC 2 cut(s) 168, 392
BsrDI GCAATG 2 cut(s) 618, 1248
BsrI ACTGG 2 cut(s) 209, 256
BssECI CCNNGG 3 cut(s) 30, 1373, 1588
BssMI GATC 4 cut(s) 160, 259, 397, 784
BssNAI GTATAC 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 1373
Bst1107I GTATAC 1 cut(s) 800
Bst4CI ACNGT 5 cut(s) 169, 421, 601, 763, 868
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 3 cut(s) 1413, 1482, 1551
BstDEI CTNAG 3 cut(s) 613, 903, 1032
BstEII GGTNACC 1 cut(s) 1493
BstF5I GGATG 4 cut(s) 25, 397, 1141, 1205
BstFNI CGCG 1 cut(s) 1478
BstHHI GCGC 2 cut(s) 1267, 1480
BstKTI GATC 4 cut(s) 163, 262, 400, 787
BstMAI GTCTC 3 cut(s) 893, 1283, 1372
BstMBI GATC 4 cut(s) 160, 259, 397, 784
BstMWI GCNNNNNNNGC 2 cut(s) 443, 1069
BstNSI RCATGY 1 cut(s) 1448
BstPI GGTNACC 1 cut(s) 1493
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 1373
BstUI CGCG 1 cut(s) 1478
BstV1I GCAGC 1 cut(s) 1133
BstV2I GAAGAC 4 cut(s) 301, 1084, 1241, 1441
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstZ17I GTATAC 1 cut(s) 800
BsuRI GGCC 4 cut(s) 267, 1018, 1472, 1553
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 4 cut(s) 25, 397, 1141, 1205
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 2 cut(s) 165, 1284
Cac8I GCNNGC 3 cut(s) 1413, 1482, 1551
CfoI GCGC 2 cut(s) 1267, 1480
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 644
CviAII CATG 6 cut(s) 70, 263, 380, 772, 911, 1445
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 3 cut(s) 613, 903, 1032
DpnI GATC 4 cut(s) 162, 261, 399, 786
DpnII GATC 4 cut(s) 160, 259, 397, 784
DraI TTTAAA 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 169
DriI GACNNNNNGTC 1 cut(s) 724
EaeI YGGCCR 1 cut(s) 1470
Eam1105I GACNNNNNGTC 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 1373
Eco32I GATATC 1 cut(s) 1402
Eco57I CTGAAG 1 cut(s) 1435
Eco88I CYCGRG 1 cut(s) 1587
Eco91I GGTNACC 1 cut(s) 1493
EcoO65I GGTNACC 1 cut(s) 1493
EcoRI GAATTC 1 cut(s) 555
EcoRV GATATC 1 cut(s) 1402
EcoT14I CCWWGG 1 cut(s) 1373
ErhI CCWWGG 1 cut(s) 1373
FaeI CATG 6 cut(s) 73, 266, 383, 775, 914, 1448
FalI AAGNNNNNCTT 2 cut(s) 1420, 1452
FaqI GGGAC 1 cut(s) 101
FatI CATG 6 cut(s) 69, 262, 379, 771, 910, 1444
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 2 cut(s) 1029, 1122
FokI GGATG 4 cut(s) 12, 404, 1148, 1212
Fsp4HI GCNGC 2 cut(s) 1029, 1122
FspBI CTAG 5 cut(s) 63, 542, 1292, 1412, 1416
GlaI GCGC 2 cut(s) 1266, 1479
GluI GCNGC 2 cut(s) 1029, 1122
HaeIII GGCC 4 cut(s) 267, 1018, 1472, 1553
HapII CCGG 1 cut(s) 1538
HhaI GCGC 2 cut(s) 1267, 1480
Hin1II CATG 6 cut(s) 73, 266, 383, 775, 914, 1448
Hin6I GCGC 2 cut(s) 1265, 1478
HinP1I GCGC 2 cut(s) 1265, 1478
HindIII AAGCTT 2 cut(s) 528, 1528
HinfI GANTC 8 cut(s) 371, 588, 827, 886, 1193, 1328, 1380, 1523
HpaII CCGG 1 cut(s) 1538
HphI GGTGA 4 cut(s) 335, 493, 1337, 1487
Hpy166II GTNNAC 1 cut(s) 800
Hpy188III TCNNGA 7 cut(s) 221, 560, 628, 767, 1197, 1292, 1587
Hpy8I GTNNAC 1 cut(s) 800
HpyAV CCTTC 3 cut(s) 251, 990, 1401
HpyCH4III ACNGT 5 cut(s) 169, 421, 601, 763, 868
HpyCH4IV ACGT 2 cut(s) 632, 685
HpyCH4V TGCA 7 cut(s) 214, 307, 368, 437, 1121, 1150, 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 1069
HpyF3I CTNAG 3 cut(s) 613, 903, 1032
HpySE526I ACGT 2 cut(s) 632, 685
Hsp92II CATG 6 cut(s) 73, 266, 383, 775, 914, 1448
HspAI GCGC 2 cut(s) 1265, 1478
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 4 cut(s) 160, 259, 397, 784
LmnI GCTCC 2 cut(s) 961, 1589
Lsp1109I GCAGC 1 cut(s) 1133
LweI GCATC 2 cut(s) 1015, 1190
MaeI CTAG 5 cut(s) 63, 542, 1292, 1412, 1416
MaeII ACGT 2 cut(s) 632, 685
MaeIII GTNAC 3 cut(s) 415, 1325, 1493
MalI GATC 4 cut(s) 162, 261, 399, 786
MboI GATC 4 cut(s) 160, 259, 397, 784
MboII GAAGA 9 cut(s) 306, 525, 528, 532, 535, 569, 1084, 1246, 1441
MfeI CAATTG 3 cut(s) 359, 637, 1345
MhlI GDGCHC 2 cut(s) 1373, 1586
MlyI GAGTC 5 cut(s) 821, 1187, 1322, 1374, 1532
MmeI TCCRAC 1 cut(s) 451
MspI CCGG 1 cut(s) 1538
MunI CAATTG 3 cut(s) 359, 637, 1345
MvnI CGCG 1 cut(s) 1478
MwoI GCNNNNNNNGC 2 cut(s) 443, 1069
NdeII GATC 4 cut(s) 160, 259, 397, 784
NheI GCTAGC 1 cut(s) 1411
NlaIII CATG 6 cut(s) 73, 266, 383, 775, 914, 1448
NlaIV GGNNCC 3 cut(s) 287, 957, 1304
NmuCI GTSAC 2 cut(s) 1325, 1493
NspI RCATGY 1 cut(s) 1448
PfeI GAWTC 3 cut(s) 371, 588, 886
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 1030, 1123
PleI GAGTC 5 cut(s) 821, 1187, 1322, 1374, 1531
PpsI GAGTC 5 cut(s) 821, 1187, 1322, 1374, 1531
PshBI ATTAAT 4 cut(s) 102, 663, 1128, 1557
PspEI GGTNACC 1 cut(s) 1493
PspN4I GGNNCC 3 cut(s) 287, 957, 1304
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SatI GCNGC 2 cut(s) 1029, 1122
Sau3AI GATC 4 cut(s) 160, 259, 397, 784
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 5 cut(s) 821, 1187, 1322, 1374, 1532
SduI GDGCHC 2 cut(s) 1373, 1586
SfaNI GCATC 2 cut(s) 1015, 1190
SfcI CTRYAG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 447, 1268
SmoI CTYRAG 2 cut(s) 447, 1268
SsiI CCGC 1 cut(s) 1028
SspI AATATT 3 cut(s) 100, 694, 778
SspMI CTAG 5 cut(s) 63, 542, 1292, 1412, 1416
StyI CCWWGG 1 cut(s) 1373
TaaI ACNGT 5 cut(s) 169, 421, 601, 763, 868
TaiI ACGT 2 cut(s) 635, 688
TauI GCSGC 1 cut(s) 1031
TfiI GAWTC 3 cut(s) 371, 588, 886
TscAI CASTG 2 cut(s) 172, 1291
TseFI GTSAC 2 cut(s) 1325, 1493
TseI GCWGC 1 cut(s) 1121
Tsp45I GTSAC 2 cut(s) 1325, 1493
TspDTI ATGAA 4 cut(s) 192, 396, 788, 1168
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 2 cut(s) 172, 1291
Van91I CCANNNNNTGG 1 cut(s) 125
VspI ATTAAT 4 cut(s) 102, 663, 1128, 1557
XapI RAATTY 8 cut(s) 408, 496, 509, 555, 860, 969, 1044, 1500
XbaI TCTAGA 1 cut(s) 1291
XceI RCATGY 1 cut(s) 1448
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 5 cut(s) 63, 542, 1292, 1412, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.