RLG00000025145

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000492
Physical Location & Seq
Forward (+)
42468875 .. 42469717
843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025145

Sequence Viewer

Length: 366 bp
ATGGCTATTAAGGTAGATTTGGAAAAAGTCTATGATTATTTGGATTGGAATTATATTAAACTGTGTTTACACAGATTTGGGTTTGATGTTCAATGGATAAACTTAATAATGGAATGCATTTCTTCTGTTACTTTTTCCATTCTTATTAATGGCAAGCAAGAAGGTCATTTTGCTCCTTCTAGGGGTGTTCGTCAGGGAGATCCTCTCTCGCCCTATATTTTTATTCTATGCATGGAACCTCTTATTAGACATTTAAATCACGGTGCTTCTAACTCTAAGAACCATGTTGGCATTCTCTCCTCCCCTGGGGGACATAGAATATCCAATCTTATGTTTGTTGATGATTGTTTGATTAATTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

122

Amino Acids

13.8

Weight (kDa)

6.57

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 2 - 118 2.8e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 182, 306
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 304
AlwI GGATC 1 cut(s) 194
AseI ATTAAT 2 cut(s) 147, 354
BciT130I CCWGG 1 cut(s) 306
BfaI CTAG 2 cut(s) 180, 364
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 189, 221
BsaJI CCNNGG 2 cut(s) 304, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 306
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 304, 305
BseLI CCNNNNNNNGG 2 cut(s) 182, 306
BseRI GAGGAG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 182, 306
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 2 cut(s) 119, 291
Bsp143I GATC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 304, 305
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 63, 263
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 276
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 155
CviAII CATG 2 cut(s) 232, 284
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DraI TTTAAA 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 304
EcoT22I ATGCAT 2 cut(s) 119, 233
FaeI CATG 2 cut(s) 235, 287
FaiI YATR 8 cut(s) 33, 54, 216, 229, 233, 285, 315, 332
FaqI GGGAC 1 cut(s) 324
FatI CATG 2 cut(s) 231, 283
FspBI CTAG 2 cut(s) 180, 364
Hin1II CATG 2 cut(s) 235, 287
Hpy166II GTNNAC 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 155, 186
HpyCH4III ACNGT 2 cut(s) 63, 263
HpyCH4V TGCA 2 cut(s) 117, 231
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 2 cut(s) 235, 287
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 179, 291, 318
MaeI CTAG 2 cut(s) 180, 364
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 114
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 49, 355
MnlI CCTC 3 cut(s) 213, 249, 310
Mph1103I ATGCAT 2 cut(s) 119, 233
MseI TTAA 6 cut(s) 9, 57, 104, 147, 254, 354
MspR9I CCNGG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 119, 291
MvaI CCWGG 1 cut(s) 306
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 235, 287
NlaIV GGNNCC 1 cut(s) 237
NsiI ATGCAT 2 cut(s) 119, 233
PasI CCCWGGG 1 cut(s) 305
PctI GAATGC 2 cut(s) 119, 291
PshBI ATTAAT 2 cut(s) 147, 354
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 199
SaqAI TTAA 6 cut(s) 9, 57, 104, 147, 254, 354
Sau3AI GATC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 306
SetI ASST 3 cut(s) 15, 166, 241
SmiI ATTTAAAT 1 cut(s) 255
Sse9I AATT 2 cut(s) 49, 355
SspMI CTAG 2 cut(s) 180, 364
StyD4I CCNGG 1 cut(s) 304
SwaI ATTTAAAT 1 cut(s) 255
TaaI ACNGT 2 cut(s) 63, 263
TasI AATT 2 cut(s) 49, 355
Tru1I TTAA 6 cut(s) 9, 57, 104, 147, 254, 354
Tru9I TTAA 6 cut(s) 9, 57, 104, 147, 254, 354
VspI ATTAAT 2 cut(s) 147, 354
XspI CTAG 2 cut(s) 180, 364
Zsp2I ATGCAT 2 cut(s) 119, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.