FvH4_6g34741

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000492
Physical Location & Seq
Reverse (-)
27415136 .. 27415645
510 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34741.t1

Sequence Viewer

Length: 426 bp
ATGATGCTTGTATTGCTGAAGAGATATTTTGGGCACAACGAGCACGAACAAACTGGTTACAATTGGGACAAGAACACCAAGTACTTTCAAACCCAAGCTCTCATTCGTAGGAATCGTAAACGCATTCTTAAATTGAAAGATGATATTGGTATTTGGCATGATGATCAAAGTGACATAGCTGCTATACTGTTGAAAGCTTTCAAGAAGCGGTTTACTGCCAATGTTCCCATTTCTTCTAACCATGTCAATGAGTTTCTTAGTCTTATTACCCCTTGTGTCACAGCAGAGGATAATAATATGCTTTTAACTACTCCTAGCATGGAAGAGATTCATGAGGCTTTGTTTTCTATTGGTGCCCTTAAAGCACCTGGCCCAGATGGATATCAACGACGGTATGCTCAAAGGCTTTCCAGACCCAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

142

Amino Acids

16.42

Weight (kDa)

9.44

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AciI CCGC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 4 cut(s) 89, 136, 193, 202
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 3 cut(s) 98, 179, 197
AluI AGCT 3 cut(s) 98, 179, 197
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 2 cut(s) 197, 327
AspS9I GGNCC 1 cut(s) 371
BaeGI GKGCMC 2 cut(s) 36, 358
BanI GGYRCC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 369
BseJI GATNNNNATC 1 cut(s) 381
BseNI ACTGG 1 cut(s) 58
BseSI GKGCMC 2 cut(s) 36, 358
BseXI GCAGC 1 cut(s) 166
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 3 cut(s) 36, 45, 358
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 208
BspANI GGCC 1 cut(s) 372
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 58
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 189, 393
Bst6I CTCTTC 2 cut(s) 14, 318
BstDEI CTNAG 1 cut(s) 257
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 13, 40, 362
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 2 cut(s) 36, 358
BstV1I GCAGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 372
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 82
CviAII CATG 4 cut(s) 158, 242, 319, 332
CviJI RGCY 6 cut(s) 98, 179, 197, 338, 372, 406
CviKI_1 RGCY 6 cut(s) 98, 179, 197, 338, 372, 406
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 14, 318
EarI CTCTTC 2 cut(s) 14, 318
Eco32I GATATC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 383
FaeI CATG 4 cut(s) 161, 245, 322, 335
FaiI YATR 8 cut(s) 159, 176, 185, 243, 299, 320, 333, 396
FaqI GGGAC 1 cut(s) 80
FatI CATG 4 cut(s) 157, 241, 318, 331
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 4 cut(s) 161, 245, 322, 335
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 2 cut(s) 112, 328
Hpy166II GTNNAC 2 cut(s) 119, 213
Hpy188III TCNNGA 3 cut(s) 202, 332, 411
Hpy8I GTNNAC 2 cut(s) 119, 213
Hpy99I CGWCG 1 cut(s) 393
HpyCH4III ACNGT 2 cut(s) 189, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 40, 362
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 4 cut(s) 161, 245, 322, 335
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 39, 354, 381, 387
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 56, 170, 277
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 31, 225, 335
MfeI CAATTG 1 cut(s) 61
MhlI GDGCHC 3 cut(s) 36, 45, 358
MluCI AATT 2 cut(s) 61, 131
MnlI CCTC 2 cut(s) 280, 328
MroXI GAANNNNTTC 2 cut(s) 197, 327
MseI TTAA 3 cut(s) 129, 305, 360
MslI CAYNNNNRTG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 13, 40, 362
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 161, 245, 322, 335
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 170, 277
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PctI GAATGC 1 cut(s) 123
PdmI GAANNNNTTC 2 cut(s) 197, 327
PfeI GAWTC 2 cut(s) 112, 328
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 371
PsrI GAACNNNNNNTAC 2 cut(s) 65, 97
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 129, 305, 360
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 371
ScaI AGTACT 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 3 cut(s) 36, 45, 358
SetI ASST 4 cut(s) 100, 181, 199, 370
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 2 cut(s) 61, 131
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 2 cut(s) 189, 393
TasI AATT 2 cut(s) 61, 131
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 2 cut(s) 112, 328
Tru1I TTAA 3 cut(s) 129, 305, 360
Tru9I TTAA 3 cut(s) 129, 305, 360
TseFI GTSAC 2 cut(s) 170, 277
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 2 cut(s) 170, 277
TspDTI ATGAA 1 cut(s) 320
XmnI GAANNNNTTC 2 cut(s) 197, 327
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.