Rmu_co8327795.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8327795.1
OG0000492
Physical Location & Seq
Forward (+)
1 .. 586
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8327795.1_g000001.1.cds

Sequence Viewer

Length: 517 bp
gaaatatcttaggaagcatactttctttgacaccaagcccagggcaaatcactccatggcttggaaaggaatacttgaaagcagggacattcttatgcaaggtatgagatggattatcagttccggtcgggatgttaaatttttgacttttaactgggtctttcaattccctttaattgatcttctccctattaataatagatcttctatccatttggcggataatgtgagtgactttattgttaatggttgctggaattatgacaagttatctcaattactaccaaaagagattgtcgataatattactggtattcccttaccagttgttgaaactaaagatgaatttgtttggggcccgtccccttcagggtgtttttccataaagcctgcaacttggttgcaatgtgataacaagccccccgagggtacttctagaattctcaatgagatttggaaattaaatgttctccaaaagcaaaaatctttgcttggttattggctagaagaagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

171

Amino Acids

19.85

Weight (kDa)

7.88

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 1 cut(s) 219
AcsI RAATTY 3 cut(s) 138, 345, 439
AcuI CTGAAG 1 cut(s) 352
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 5 cut(s) 40, 61, 218, 370, 426
AgsI TTSAA 3 cut(s) 78, 165, 333
AjnI CCWGG 1 cut(s) 39
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 356
ApaI GGGCCC 1 cut(s) 360
ApoI RAATTY 3 cut(s) 138, 345, 439
AseI ATTAAT 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 356, 357
AvaI CYCGRG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 360
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 436, 504
BglII AGATCT 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 356, 357
BmiI GGNNCC 2 cut(s) 357, 358
BmrFI CCNGG 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 39, 40, 55, 424
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 61, 218, 370, 426
Bse1I ACTGG 3 cut(s) 159, 314, 324
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 4 cut(s) 39, 40, 55, 424
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 5 cut(s) 40, 61, 218, 370, 426
BseMI GCAATG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 159, 314, 324
BseSI GKGCMC 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 124
BslFI GGGAC 2 cut(s) 99, 347
BslI CCNNNNNNNGG 5 cut(s) 40, 61, 218, 370, 426
BsmFI GGGAC 2 cut(s) 99, 347
BsnI GGCC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 423
Bsp120I GGGCCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 179, 201
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 357, 358
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 3 cut(s) 159, 314, 324
BssECI CCNNGG 4 cut(s) 39, 40, 55, 424
BssMI GATC 2 cut(s) 179, 201
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 2 cut(s) 182, 204
BstMBI GATC 2 cut(s) 179, 201
BstMCI CGRYCG 1 cut(s) 128
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 356, 357
Csp6I GTAC 1 cut(s) 430
CviAII CATG 1 cut(s) 56
CviJI RGCY 6 cut(s) 38, 60, 358, 389, 419, 503
CviKI_1 RGCY 6 cut(s) 38, 60, 358, 389, 419, 503
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 181, 203
DpnII GATC 2 cut(s) 179, 201
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 59
FaiI YATR 6 cut(s) 19, 57, 96, 105, 262, 384
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 2 cut(s) 99, 347
FatI CATG 1 cut(s) 55
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 360
FspBI CTAG 2 cut(s) 436, 504
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 124
Hin1II CATG 1 cut(s) 59
HpaII CCGG 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 129, 436
HpyAV CCTTC 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 98, 393, 404
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 2 cut(s) 179, 201
MaeI CTAG 2 cut(s) 436, 504
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 181, 203
MboI GATC 2 cut(s) 179, 201
MboII GAAGA 2 cut(s) 174, 196
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 8 cut(s) 138, 165, 175, 257, 276, 345, 439, 459
MnlI CCTC 1 cut(s) 419
MseI TTAA 6 cut(s) 136, 151, 174, 193, 244, 462
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 55
NdeII GATC 2 cut(s) 179, 201
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 357, 358
NmuCI GTSAC 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 357, 358
PspOMI GGGCCC 1 cut(s) 356
PspPI GGNCC 2 cut(s) 356, 357
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 6 cut(s) 136, 151, 174, 193, 244, 462
Sau3AI GATC 2 cut(s) 179, 201
Sau96I GGNCC 2 cut(s) 356, 357
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 360
SetI ASST 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 8 cut(s) 138, 165, 175, 257, 276, 345, 439, 459
SsiI CCGC 1 cut(s) 219
SspI AATATT 1 cut(s) 305
SspMI CTAG 2 cut(s) 436, 504
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 55
TaqI TCGA 1 cut(s) 298
TasI AATT 8 cut(s) 138, 165, 175, 257, 276, 345, 439, 459
Tru1I TTAA 6 cut(s) 136, 151, 174, 193, 244, 462
Tru9I TTAA 6 cut(s) 136, 151, 174, 193, 244, 462
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 61
VspI ATTAAT 1 cut(s) 193
XapI RAATTY 3 cut(s) 138, 345, 439
XbaI TCTAGA 1 cut(s) 435
XspI CTAG 2 cut(s) 436, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.