Rroxscaffold_2G00142400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000492
Physical Location & Seq
Reverse (-)
80434098 .. 80439677
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142400.1

Sequence Viewer

Length: 1272 bp
ATGGAACCTCTAATTAGAAACTTCAATAAACTTACTCTACACCCAAGGAATCAAGTCGGGATTCTGACTTTGAACCATGGGTTTAGAATTTCTAATTTAATGTTTGTTGATAACTGTTTAATCTTTGGTAAGGCCTCTCATACAGCTGCCAAGAATATTCTCTCAGTGCTTAATCTCTTTACAGAAGCTTCAGGACAACAGATCAATTACCACAAGTCAGTAATATACTTTTCTTCTAATATTTCTTACGCTGTCAAGCGAGACATTGCTTGCTGTTTAGGAATTACTCATAAATCTACTATTGGTAAATATTTGGGAGTTCACAACATAATTTTCTGGAAGGACCCTATTAATACCTCTGGGCTTATTTTAAAAATTCAGAACAAGCTTGCAGGTTGGAAAGCTCATACGCTCTCTCGAGGAGGTAAACTTACACTCATTCAATCCAACCTTTTAGGTAGTCCCAACCATGTCTTATCTTGTTTTAAATGCCTGGCTAAAATTACTTCTAGAATTGATAGAGAAAGTCAAAATTTTCTTTGGAATTCCTCTACTCCTCCGGTTTCTTGGAACCAGGTTTGCTTACCGAAGCGATTTGGAGGTCTTGGTATTAGACCAGCAGCTTGGTTTAACAATGCTGCCTTAGCTAAACTAGCTTGGAAAGTTCTTATAGAGCCCAACAATTGGTGGGTTAAGCTTGTCTCTTGCAAGTACCTTCGAACTAATCACTTTTTTTCTGTTAGAAAGAAATCTTCAAACTCTTTAGCTTGGAAAGGCATTTTGGACGCTAGAAATTTATTGCTTCAGGGCATCAGATGGTCTGTGGGAAATGGAGAAAGCATAAACTTTTGGTCCTTCAATTGGGTTTTACCTTTTCAGCTTTATAATCCTATTCCTGAATCTGACAGACATACTCTAAACTGGTCTCTCTCAGTAGCTGATTTTATTGATAATCATTCTTGGAAAGTTCATGATCTTCTTTCTATTTTGCCTCAAGATATTGTTGATATTCAAGATGAATTTTTCTGGGGTCCTTCTAGTTCTGGTAAGTATACTATCAAGAGTGCTACTTGGTTACAGGCTCAGCATTGCCTTGTTCATTCGAAAGCTCCTCTCCTTAATAGAATCTGGAAGCTTAGAATCCCTCCAAAAGTCAAAATTTTCTGTTGGATTTTATTAGAGAAAAGCTTAGATCTAGAGACAAACTCTCTACTTTTAATCCAAATATTCCTCCTGATTGCCCTCTGTGTTTCTCCCAGCTTGAGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

423

Amino Acids

48.15

Weight (kDa)

9.84

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
Acc36I ACCTGC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 684
AccI GTMKAC 1 cut(s) 1052
AcsI RAATTY 7 cut(s) 87, 375, 532, 544, 793, 1019, 1158
AcuI CTGAAG 2 cut(s) 174, 788
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 684, 861
AgsI TTSAA 6 cut(s) 25, 73, 443, 756, 859, 1013
AjnI CCWGG 2 cut(s) 492, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
Alw26I GTCTC 4 cut(s) 255, 706, 930, 1193
AlwNI CAGNNNCTG 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 146, 620, 638
ApoI RAATTY 7 cut(s) 87, 375, 532, 544, 793, 1019, 1158
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 343, 852, 1031
AsuII TTCGAA 2 cut(s) 718, 1103
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 3 cut(s) 343, 852, 1031
BanII GRGCYC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 133, 625, 632
BccI CCATC 1 cut(s) 810
BciT130I CCWGG 2 cut(s) 494, 575
BcoDI GTCTC 4 cut(s) 255, 706, 930, 1193
BfaI CTAG 5 cut(s) 510, 653, 789, 1038, 1196
BfuAI ACCTGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 1192
BisI GCNGC 3 cut(s) 147, 621, 639
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 3 cut(s) 148, 622, 640
Bme1390I CCNGG 2 cut(s) 494, 575
Bme18I GGWCC 3 cut(s) 343, 852, 1031
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 343, 852, 1031
BmiI GGNNCC 4 cut(s) 6, 345, 572, 1032
BmrFI CCNGG 2 cut(s) 494, 575
BmsI GCATC 1 cut(s) 819
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
Bpu10I CCTNAGC 1 cut(s) 643
Bpu1102I GCTNAGC 1 cut(s) 1083
Bpu14I TTCGAA 2 cut(s) 718, 1103
BpuEI CTTGAG 1 cut(s) 978
BsaI GGTCTC 1 cut(s) 930
BsaJI CCNNGG 2 cut(s) 44, 76
BsaWI WCCGGW 1 cut(s) 559
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 861
Bse1I ACTGG 1 cut(s) 926
Bse3DI GCAATG 2 cut(s) 264, 1087
BseBI CCWGG 2 cut(s) 494, 575
BseDI CCNNGG 2 cut(s) 44, 76
BseLI CCNNNNNNNGG 2 cut(s) 684, 861
BseMI GCAATG 2 cut(s) 264, 1087
BseMII CTCAG 3 cut(s) 177, 945, 1097
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 3 cut(s) 435, 546, 1101
BseXI GCAGC 3 cut(s) 133, 625, 632
BseYI CCCAGC 1 cut(s) 1256
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 684, 861
BsmAI GTCTC 4 cut(s) 255, 706, 930, 1193
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 930
BsoBI CYCGRG 1 cut(s) 417
Bsp119I TTCGAA 2 cut(s) 718, 1103
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 201, 973, 1192
Bsp1720I GCTNAGC 1 cut(s) 1083
Bsp19I CCATGG 1 cut(s) 76
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 3 cut(s) 176, 944, 1096
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 4 cut(s) 6, 345, 572, 1032
BspMI ACCTGC 1 cut(s) 383
BspT104I TTCGAA 2 cut(s) 718, 1103
BspTNI GGTCTC 1 cut(s) 930
BsrDI GCAATG 2 cut(s) 264, 1087
BsrI ACTGG 1 cut(s) 926
BssECI CCNNGG 2 cut(s) 44, 76
BssMI GATC 3 cut(s) 201, 973, 1192
BssNAI GTATAC 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 44, 76
Bst1107I GTATAC 1 cut(s) 1053
Bst2UI CCWGG 2 cut(s) 494, 575
Bst4CI ACNGT 1 cut(s) 116
BstBI TTCGAA 2 cut(s) 718, 1103
BstC8I GCNNGC 2 cut(s) 271, 390
BstDEI CTNAG 6 cut(s) 163, 643, 931, 1083, 1136, 1189
BstDSI CCRYGG 1 cut(s) 76
BstKTI GATC 3 cut(s) 204, 976, 1195
BstMAI GTCTC 4 cut(s) 255, 706, 930, 1193
BstMBI GATC 3 cut(s) 201, 973, 1192
BstMWI GCNNNNNNNGC 2 cut(s) 644, 653
BstNI CCWGG 2 cut(s) 494, 575
BstSCI CCNGG 2 cut(s) 492, 573
BstV1I GCAGC 3 cut(s) 133, 625, 632
BstX2I RGATCY 1 cut(s) 1192
BstXI CCANNNNNNTGG 1 cut(s) 624
BstYI RGATCY 1 cut(s) 1192
BstZ17I GTATAC 1 cut(s) 1053
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 271, 390
CaiI CAGNNNCTG 1 cut(s) 938
CciI TCATGA 1 cut(s) 970
Cfr13I GGNCC 3 cut(s) 343, 852, 1031
CseI GACGC 1 cut(s) 794
CsiI ACCWGGT 1 cut(s) 573
Csp6I GTAC 1 cut(s) 712
CviAII CATG 3 cut(s) 77, 470, 971
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 6 cut(s) 163, 643, 931, 1083, 1136, 1189
DpnI GATC 3 cut(s) 203, 975, 1194
DpnII GATC 3 cut(s) 201, 973, 1192
DraI TTTAAA 2 cut(s) 372, 487
Eco130I CCWWGG 2 cut(s) 44, 76
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 930
Eco47I GGWCC 3 cut(s) 343, 852, 1031
Eco57I CTGAAG 2 cut(s) 174, 788
Eco88I CYCGRG 1 cut(s) 417
EcoO109I RGGNCCY 2 cut(s) 343, 1031
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 492, 573
EcoT14I CCWWGG 2 cut(s) 44, 76
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 2 cut(s) 44, 76
FaeI CATG 3 cut(s) 80, 473, 974
FaqI GGGAC 1 cut(s) 447
FatI CATG 3 cut(s) 76, 469, 970
FblI GTMKAC 1 cut(s) 1052
Fnu4HI GCNGC 3 cut(s) 147, 621, 639
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 3 cut(s) 147, 621, 639
FspBI CTAG 5 cut(s) 510, 653, 789, 1038, 1196
GluI GCNGC 3 cut(s) 147, 621, 639
GsaI CCCAGC 1 cut(s) 1260
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 560
HgaI GACGC 1 cut(s) 794
Hin1II CATG 3 cut(s) 80, 473, 974
HindIII AAGCTT 5 cut(s) 186, 386, 695, 1133, 1186
HinfI GANTC 6 cut(s) 49, 61, 899, 1125, 1140, 1264
HpaII CCGG 1 cut(s) 560
Hpy166II GTNNAC 3 cut(s) 322, 428, 1053
Hpy188I TCNGA 4 cut(s) 66, 381, 815, 904
Hpy8I GTNNAC 3 cut(s) 322, 428, 1053
HpyAV CCTTC 4 cut(s) 334, 725, 865, 1044
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 392, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 644, 653
HpyF3I CTNAG 6 cut(s) 163, 643, 931, 1083, 1136, 1189
Hsp92II CATG 3 cut(s) 80, 473, 974
Kzo9I GATC 3 cut(s) 201, 973, 1192
LmnI GCTCC 1 cut(s) 1114
Lsp1109I GCAGC 3 cut(s) 133, 625, 632
LweI GCATC 1 cut(s) 819
MabI ACCWGGT 1 cut(s) 573
MaeI CTAG 5 cut(s) 510, 653, 789, 1038, 1196
MaeIII GTNAC 1 cut(s) 1074
MalI GATC 3 cut(s) 203, 975, 1194
MboI GATC 3 cut(s) 201, 973, 1192
MboII GAAGA 3 cut(s) 225, 744, 968
MfeI CAATTG 2 cut(s) 682, 859
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 1 cut(s) 678
MmeI TCCRAC 3 cut(s) 377, 471, 1148
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 494, 575
MunI CAATTG 2 cut(s) 682, 859
MvaI CCWGG 2 cut(s) 494, 575
MwoI GCNNNNNNNGC 2 cut(s) 644, 653
NcoI CCATGG 1 cut(s) 76
NdeII GATC 3 cut(s) 201, 973, 1192
NlaIII CATG 3 cut(s) 80, 473, 974
NlaIV GGNNCC 4 cut(s) 6, 345, 572, 1032
NspV TTCGAA 2 cut(s) 718, 1103
PaeR7I CTCGAG 1 cut(s) 417
PagI TCATGA 1 cut(s) 970
PceI AGGCCT 1 cut(s) 134
PfeI GAWTC 5 cut(s) 49, 61, 899, 1125, 1140
PflMI CCANNNNNTGG 1 cut(s) 684
PkrI GCNGC 3 cut(s) 148, 622, 640
PpuMI RGGWCCY 2 cut(s) 343, 1031
PshBI ATTAAT 1 cut(s) 351
PsiI TTATAA 1 cut(s) 885
Psp5II RGGWCCY 2 cut(s) 343, 1031
Psp6I CCWGG 2 cut(s) 492, 573
PspFI CCCAGC 1 cut(s) 1256
PspGI CCWGG 2 cut(s) 492, 573
PspN4I GGNNCC 4 cut(s) 6, 345, 572, 1032
PspPI GGNCC 3 cut(s) 343, 852, 1031
PspPPI RGGWCCY 2 cut(s) 343, 1031
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SatI GCNGC 3 cut(s) 147, 621, 639
Sau3AI GATC 3 cut(s) 201, 973, 1192
Sau96I GGNCC 3 cut(s) 343, 852, 1031
ScrFI CCNGG 2 cut(s) 494, 575
SduI GDGCHC 1 cut(s) 678
SexAI ACCWGGT 1 cut(s) 573
SfaNI GCATC 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 417
SfuI TTCGAA 2 cut(s) 718, 1103
SinI GGWCC 3 cut(s) 343, 852, 1031
SlaI CTCGAG 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 417, 993, 1261
SmoI CTYRAG 3 cut(s) 417, 993, 1261
SseBI AGGCCT 1 cut(s) 134
SspI AATATT 4 cut(s) 157, 241, 311, 1227
SspMI CTAG 5 cut(s) 510, 653, 789, 1038, 1196
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 492, 573
StyI CCWWGG 2 cut(s) 44, 76
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 3 cut(s) 418, 718, 1103
TfiI GAWTC 5 cut(s) 49, 61, 899, 1125, 1140
TscAI CASTG 1 cut(s) 171
TseI GCWGC 3 cut(s) 146, 620, 638
TspDTI ATGAA 3 cut(s) 959, 1032, 1088
TspRI CASTG 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 684
VpaK11BI GGWCC 3 cut(s) 343, 852, 1031
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 7 cut(s) 87, 375, 532, 544, 793, 1019, 1158
XbaI TCTAGA 2 cut(s) 509, 1195
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 1052
XspI CTAG 5 cut(s) 510, 653, 789, 1038, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.