Rmu_sc0021327.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021327.1
OG0000492
Physical Location & Seq
Reverse (-)
1 .. 449
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021327.1_g000001.1.cds

Sequence Viewer

Length: 355 bp
atgccaaaccatgttatgtcttgcttcaaatgccctccaaaagttactaaagccattgacaaagaaactagatctttcttctgggttaaggattgtcattcccccccagttgcctggaaccaaatttgcctgcctaattccttaggtagtcttggaattcggccgacagcttctttcaacaaggctgctttggcaaaactaggctggaaagtgatctctgatcatgataactggtgggttgatattgttcgtaggaagtacttaagaaaacattcttttttcatgcaaactaagcagggcaaccattctatagcctggaaaggtattcttgaaaatagagatcttataatccagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

118

Amino Acids

13.68

Weight (kDa)

9.86

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 2 cut(s) 123, 156
AfaI GTAC 1 cut(s) 260
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 28, 178, 332
AjnI CCWGG 2 cut(s) 113, 314
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 123, 156
Asp700I GAANNNNTTC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 142
BbvI GCAGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 115, 316, 353
BclI TGATCA 1 cut(s) 220
BfaI CTAG 2 cut(s) 69, 200
BfmI CTRYAG 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 262
BglII AGATCT 2 cut(s) 71, 340
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 115, 316, 353
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 3 cut(s) 115, 316, 353
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 107, 236
Bse21I CCTNAGG 1 cut(s) 142
BseBI CCWGG 3 cut(s) 115, 316, 353
BseNI ACTGG 2 cut(s) 107, 236
BseX3I CGGCCG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 164
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 71, 213, 220, 340
BspANI GGCC 1 cut(s) 163
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 262
BsrI ACTGG 2 cut(s) 107, 236
BssMI GATC 4 cut(s) 71, 213, 220, 340
Bst2UI CCWGG 3 cut(s) 115, 316, 353
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 142, 291
BstKTI GATC 4 cut(s) 74, 216, 223, 343
BstMBI GATC 4 cut(s) 71, 213, 220, 340
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 30, 191, 292
BstNI CCWGG 3 cut(s) 115, 316, 353
BstSCI CCNGG 2 cut(s) 113, 314
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 2 cut(s) 71, 340
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 2 cut(s) 71, 340
BstZI CGGCCG 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 223
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 11, 224, 283
CviJI RGCY 6 cut(s) 53, 163, 170, 185, 204, 314
CviKI_1 RGCY 6 cut(s) 53, 163, 170, 185, 204, 314
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 142, 291
DpnI GATC 4 cut(s) 73, 215, 222, 342
DpnII GATC 4 cut(s) 71, 213, 220, 340
EaeI YGGCCR 1 cut(s) 161
EagI CGGCCG 1 cut(s) 161
EclXI CGGCCG 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 113, 314
FaeI CATG 3 cut(s) 14, 227, 286
FaiI YATR 6 cut(s) 12, 17, 225, 284, 311, 347
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 3 cut(s) 10, 223, 282
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 69, 200
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 3 cut(s) 14, 227, 286
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 224, 329
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 191, 292
HpyF3I CTNAG 2 cut(s) 142, 291
Hsp92II CATG 3 cut(s) 14, 227, 286
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 71, 213, 220, 340
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 2 cut(s) 69, 200
MaeIII GTNAC 1 cut(s) 43
MalI GATC 4 cut(s) 73, 215, 222, 342
MboI GATC 4 cut(s) 71, 213, 220, 340
MboII GAAGA 1 cut(s) 70
MflI RGATCY 2 cut(s) 71, 340
MluCI AATT 3 cut(s) 123, 136, 156
MnlI CCTC 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 271
MseI TTAA 2 cut(s) 87, 263
MspCI CTTAAG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 115, 316, 353
MvaI CCWGG 3 cut(s) 115, 316, 353
MwoI GCNNNNNNNGC 3 cut(s) 30, 191, 292
NdeII GATC 4 cut(s) 71, 213, 220, 340
NlaIII CATG 3 cut(s) 14, 227, 286
NlaIV GGNNCC 1 cut(s) 119
PagI TCATGA 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 187
PsiI TTATAA 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 113, 314
PspGI CCWGG 2 cut(s) 113, 314
PspN4I GGNNCC 1 cut(s) 119
PsuI RGATCY 2 cut(s) 71, 340
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 87, 263
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 71, 213, 220, 340
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 115, 316, 353
SetI ASST 3 cut(s) 148, 172, 325
SfcI CTRYAG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 3 cut(s) 123, 136, 156
SspMI CTAG 2 cut(s) 69, 200
StyD4I CCNGG 2 cut(s) 113, 314
TasI AATT 3 cut(s) 123, 136, 156
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 87, 263
Tru9I TTAA 2 cut(s) 87, 263
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 262
XapI RAATTY 2 cut(s) 123, 156
XmnI GAANNNNTTC 1 cut(s) 271
XspI CTAG 2 cut(s) 69, 200
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.