ribonuclease H protein At1g65750
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 255 - 513 | 1.1e-35 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 206 |
| AccB1I | GGYRCC | 1 cut(s) | 893 |
| AccI | GTMKAC | 1 cut(s) | 1264 |
| AciI | CCGC | 2 cut(s) | 463, 1638 |
| AcsI | RAATTY | 6 cut(s) | 707, 778, 1120, 1157, 1704, 1746 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1222, 1544, 1708 |
| AjnI | CCWGG | 3 cut(s) | 897, 1278, 1527 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1546, 1578 |
| Alw26I | GTCTC | 9 cut(s) | 131, 330, 557, 740, 913, 959, 1071, 1112, 1138 |
| Ama87I | CYCGRG | 1 cut(s) | 1170 |
| AoxI | GGCC | 5 cut(s) | 324, 517, 1276, 1514, 1531 |
| ApeKI | GCWGC | 1 cut(s) | 1671 |
| ApoI | RAATTY | 6 cut(s) | 707, 778, 1120, 1157, 1704, 1746 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1737 |
| AspLEI | GCGC | 1 cut(s) | 905 |
| AspS9I | GGNCC | 4 cut(s) | 324, 629, 1384, 1531 |
| AsuC2I | CCSGG | 1 cut(s) | 627 |
| AsuHPI | GGTGA | 3 cut(s) | 158, 748, 1199 |
| AvaI | CYCGRG | 1 cut(s) | 1170 |
| AvaII | GGWCC | 2 cut(s) | 629, 1384 |
| AxyI | CCTNAGG | 1 cut(s) | 1540 |
| BaeGI | GKGCMC | 1 cut(s) | 898 |
| BanI | GGYRCC | 1 cut(s) | 893 |
| BbvI | GCAGC | 1 cut(s) | 1683 |
| BccI | CCATC | 5 cut(s) | 59, 549, 1077, 1474, 1754 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BciT130I | CCWGG | 3 cut(s) | 899, 1280, 1529 |
| BclI | TGATCA | 2 cut(s) | 1024, 1489 |
| BcnI | CCSGG | 1 cut(s) | 627 |
| BcoDI | GTCTC | 9 cut(s) | 131, 330, 557, 740, 913, 959, 1071, 1112, 1138 |
| BfaI | CTAG | 4 cut(s) | 365, 1217, 1388, 1789 |
| BfoI | RGCGCY | 1 cut(s) | 906 |
| BfuAI | ACCTGC | 1 cut(s) | 206 |
| BisI | GCNGC | 1 cut(s) | 1672 |
| BlpI | GCTNAGC | 1 cut(s) | 312 |
| BlsI | GCNGC | 1 cut(s) | 1673 |
| Bme1390I | CCNGG | 4 cut(s) | 627, 899, 1280, 1529 |
| Bme18I | GGWCC | 2 cut(s) | 629, 1384 |
| BmeT110I | CYCGRG | 1 cut(s) | 1170 |
| BmgT120I | GGNCC | 4 cut(s) | 324, 629, 1384, 1531 |
| BmiI | GGNNCC | 4 cut(s) | 530, 630, 895, 1574 |
| BmrFI | CCNGG | 4 cut(s) | 627, 899, 1280, 1529 |
| BmrI | ACTGGG | 1 cut(s) | 1571 |
| BmsI | GCATC | 1 cut(s) | 922 |
| BmuI | ACTGGG | 1 cut(s) | 1571 |
| BpmI | CTGGAG | 3 cut(s) | 287, 319, 581 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 312 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 627 |
| BsaAI | YACGTR | 1 cut(s) | 1030 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1732 |
| BsaI | GGTCTC | 1 cut(s) | 1138 |
| BsaJI | CCNNGG | 3 cut(s) | 897, 898, 1528 |
| BsaWI | WCCGGW | 1 cut(s) | 1708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1222, 1544, 1708 |
| Bse1I | ACTGG | 2 cut(s) | 270, 1577 |
| Bse21I | CCTNAGG | 1 cut(s) | 1540 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1732 |
| BseBI | CCWGG | 3 cut(s) | 899, 1280, 1529 |
| BseDI | CCNNGG | 3 cut(s) | 897, 898, 1528 |
| BseGI | GGATG | 8 cut(s) | 13, 55, 202, 459, 1231, 1357, 1485, 1765 |
| BseJI | GATNNNNATC | 1 cut(s) | 1732 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1222, 1544, 1708 |
| BseMII | CTCAG | 3 cut(s) | 272, 1123, 1449 |
| BseNI | ACTGG | 2 cut(s) | 270, 1577 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 898 |
| BseXI | GCAGC | 1 cut(s) | 1683 |
| BseYI | CCCAGC | 1 cut(s) | 1463 |
| BsgI | GTGCAG | 1 cut(s) | 234 |
| BshFI | GGCC | 5 cut(s) | 326, 519, 1278, 1516, 1533 |
| BshNI | GGYRCC | 1 cut(s) | 893 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1170 |
| BsiSI | CCGG | 2 cut(s) | 626, 1709 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1222, 1544, 1708 |
| BsmAI | GTCTC | 9 cut(s) | 131, 330, 557, 740, 913, 959, 1071, 1112, 1138 |
| BsnI | GGCC | 5 cut(s) | 326, 519, 1278, 1516, 1533 |
| Bso31I | GGTCTC | 1 cut(s) | 1138 |
| BsoBI | CYCGRG | 1 cut(s) | 1170 |
| Bsp1286I | GDGCHC | 1 cut(s) | 898 |
| Bsp143I | GATC | 3 cut(s) | 456, 1024, 1489 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 312 |
| BspACI | CCGC | 2 cut(s) | 463, 1638 |
| BspANI | GGCC | 5 cut(s) | 326, 519, 1278, 1516, 1533 |
| BspCNI | CTCAG | 3 cut(s) | 273, 1122, 1450 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 4 cut(s) | 530, 630, 895, 1574 |
| BspMI | ACCTGC | 1 cut(s) | 206 |
| BspQI | GCTCTTC | 1 cut(s) | 1592 |
| BspT107I | GGYRCC | 1 cut(s) | 893 |
| BspTNI | GGTCTC | 1 cut(s) | 1138 |
| BsrI | ACTGG | 2 cut(s) | 270, 1577 |
| BssECI | CCNNGG | 3 cut(s) | 897, 898, 1528 |
| BssMI | GATC | 3 cut(s) | 456, 1024, 1489 |
| Bst2UI | CCWGG | 3 cut(s) | 899, 1280, 1529 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 616 |
| Bst6I | CTCTTC | 6 cut(s) | 282, 429, 447, 1290, 1592, 1743 |
| BstBAI | YACGTR | 1 cut(s) | 1030 |
| BstC8I | GCNNGC | 1 cut(s) | 1560 |
| BstDEI | CTNAG | 6 cut(s) | 281, 312, 1109, 1458, 1540, 1667 |
| BstEII | GGTNACC | 2 cut(s) | 1187, 1547 |
| BstF5I | GGATG | 8 cut(s) | 13, 55, 202, 459, 1231, 1357, 1485, 1765 |
| BstH2I | RGCGCY | 1 cut(s) | 906 |
| BstHHI | GCGC | 1 cut(s) | 905 |
| BstKTI | GATC | 3 cut(s) | 459, 1027, 1492 |
| BstMAI | GTCTC | 9 cut(s) | 131, 330, 557, 740, 913, 959, 1071, 1112, 1138 |
| BstMBI | GATC | 3 cut(s) | 456, 1024, 1489 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 75, 902 |
| BstNI | CCWGG | 3 cut(s) | 899, 1280, 1529 |
| BstPI | GGTNACC | 2 cut(s) | 1187, 1547 |
| BstSCI | CCNGG | 4 cut(s) | 625, 897, 1278, 1527 |
| BstSLI | GKGCMC | 1 cut(s) | 898 |
| BstV1I | GCAGC | 1 cut(s) | 1683 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1540 |
| BsuRI | GGCC | 5 cut(s) | 326, 519, 1278, 1516, 1533 |
| BtsCI | GGATG | 8 cut(s) | 13, 55, 202, 459, 1231, 1357, 1485, 1765 |
| BtsI | GCAGTG | 1 cut(s) | 603 |
| BtsIMutI | CAGTG | 1 cut(s) | 603 |
| BveI | ACCTGC | 1 cut(s) | 206 |
| Cac8I | GCNNGC | 1 cut(s) | 1560 |
| CciI | TCATGA | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 905 |
| Cfr13I | GGNCC | 4 cut(s) | 324, 629, 1384, 1531 |
| CviAII | CATG | 2 cut(s) | 88, 1381 |
| DdeI | CTNAG | 6 cut(s) | 281, 312, 1109, 1458, 1540, 1667 |
| DpnI | GATC | 3 cut(s) | 458, 1026, 1491 |
| DpnII | GATC | 3 cut(s) | 456, 1024, 1489 |
| DraI | TTTAAA | 1 cut(s) | 1377 |
| Eam1104I | CTCTTC | 6 cut(s) | 282, 429, 447, 1290, 1592, 1743 |
| EarI | CTCTTC | 6 cut(s) | 282, 429, 447, 1290, 1592, 1743 |
| Eco147I | AGGCCT | 2 cut(s) | 519, 1278 |
| Eco31I | GGTCTC | 1 cut(s) | 1138 |
| Eco47I | GGWCC | 2 cut(s) | 629, 1384 |
| Eco81I | CCTNAGG | 1 cut(s) | 1540 |
| Eco88I | CYCGRG | 1 cut(s) | 1170 |
| Eco91I | GGTNACC | 2 cut(s) | 1187, 1547 |
| EcoO65I | GGTNACC | 2 cut(s) | 1187, 1547 |
| EcoRII | CCWGG | 3 cut(s) | 897, 1278, 1527 |
| FaeI | CATG | 2 cut(s) | 91, 1384 |
| FatI | CATG | 2 cut(s) | 87, 1380 |
| FbaI | TGATCA | 2 cut(s) | 1024, 1489 |
| FblI | GTMKAC | 1 cut(s) | 1264 |
| Fnu4HI | GCNGC | 1 cut(s) | 1672 |
| FokI | GGATG | 7 cut(s) | 62, 209, 446, 1238, 1364, 1492, 1772 |
| Fsp4HI | GCNGC | 1 cut(s) | 1672 |
| FspBI | CTAG | 4 cut(s) | 365, 1217, 1388, 1789 |
| GlaI | GCGC | 1 cut(s) | 904 |
| GluI | GCNGC | 1 cut(s) | 1672 |
| GsaI | CCCAGC | 1 cut(s) | 1467 |
| GsuI | CTGGAG | 3 cut(s) | 287, 319, 581 |
| HaeII | RGCGCY | 1 cut(s) | 906 |
| HaeIII | GGCC | 5 cut(s) | 326, 519, 1278, 1516, 1533 |
| HapII | CCGG | 2 cut(s) | 626, 1709 |
| HhaI | GCGC | 1 cut(s) | 905 |
| Hin1II | CATG | 2 cut(s) | 91, 1384 |
| Hin6I | GCGC | 1 cut(s) | 903 |
| HinP1I | GCGC | 1 cut(s) | 903 |
| HindIII | AAGCTT | 3 cut(s) | 823, 1560, 1620 |
| HinfI | GANTC | 7 cut(s) | 84, 130, 351, 475, 1654, 1733, 1764 |
| HpaII | CCGG | 2 cut(s) | 626, 1709 |
| HphI | GGTGA | 3 cut(s) | 158, 748, 1199 |
| Hpy166II | GTNNAC | 1 cut(s) | 1265 |
| Hpy188I | TCNGA | 4 cut(s) | 509, 1134, 1743, 1769 |
| Hpy188III | TCNNGA | 8 cut(s) | 88, 100, 134, 298, 632, 1232, 1288, 1632 |
| Hpy8I | GTNNAC | 1 cut(s) | 1265 |
| HpyAV | CCTTC | 9 cut(s) | 27, 31, 47, 326, 509, 541, 1268, 1342, 1544 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 616 |
| HpyCH4IV | ACGT | 1 cut(s) | 1029 |
| HpyCH4V | TGCA | 4 cut(s) | 215, 842, 935, 1318 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 75, 902 |
| HpyF3I | CTNAG | 6 cut(s) | 281, 312, 1109, 1458, 1540, 1667 |
| HpySE526I | ACGT | 1 cut(s) | 1029 |
| Hsp92II | CATG | 2 cut(s) | 91, 1384 |
| HspAI | GCGC | 1 cut(s) | 903 |
| Ksp22I | TGATCA | 2 cut(s) | 1024, 1489 |
| Kzo9I | GATC | 3 cut(s) | 456, 1024, 1489 |
| LguI | GCTCTTC | 1 cut(s) | 1592 |
| LmnI | GCTCC | 1 cut(s) | 1442 |
| Lsp1109I | GCAGC | 1 cut(s) | 1683 |
| LweI | GCATC | 1 cut(s) | 922 |
| MaeI | CTAG | 4 cut(s) | 365, 1217, 1388, 1789 |
| MaeII | ACGT | 1 cut(s) | 1029 |
| MaeIII | GTNAC | 5 cut(s) | 608, 736, 878, 1187, 1547 |
| MalI | GATC | 3 cut(s) | 458, 1026, 1491 |
| MboI | GATC | 3 cut(s) | 456, 1024, 1489 |
| MhlI | GDGCHC | 1 cut(s) | 898 |
| MlyI | GAGTC | 2 cut(s) | 139, 1773 |
| MmeI | TCCRAC | 3 cut(s) | 1426, 1592, 1747 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1737 |
| MseI | TTAA | 7 cut(s) | 119, 410, 588, 618, 875, 1178, 1376 |
| MspI | CCGG | 2 cut(s) | 626, 1709 |
| MspR9I | CCNGG | 4 cut(s) | 627, 899, 1280, 1529 |
| MvaI | CCWGG | 3 cut(s) | 899, 1280, 1529 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 75, 902 |
| NciI | CCSGG | 1 cut(s) | 627 |
| NdeII | GATC | 3 cut(s) | 456, 1024, 1489 |
| NlaIII | CATG | 2 cut(s) | 91, 1384 |
| NlaIV | GGNNCC | 4 cut(s) | 530, 630, 895, 1574 |
| NmuCI | GTSAC | 4 cut(s) | 608, 736, 878, 1187 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PasI | CCCWGGG | 1 cut(s) | 898 |
| PceI | AGGCCT | 2 cut(s) | 519, 1278 |
| PciSI | GCTCTTC | 1 cut(s) | 1592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1737 |
| PfeI | GAWTC | 5 cut(s) | 84, 351, 475, 1654, 1733 |
| PkrI | GCNGC | 1 cut(s) | 1673 |
| PleI | GAGTC | 2 cut(s) | 138, 1772 |
| PpsI | GAGTC | 2 cut(s) | 138, 1772 |
| Ppu21I | YACGTR | 1 cut(s) | 1030 |
| Psp6I | CCWGG | 3 cut(s) | 897, 1278, 1527 |
| PspEI | GGTNACC | 2 cut(s) | 1187, 1547 |
| PspFI | CCCAGC | 1 cut(s) | 1463 |
| PspGI | CCWGG | 3 cut(s) | 897, 1278, 1527 |
| PspN4I | GGNNCC | 4 cut(s) | 530, 630, 895, 1574 |
| PspPI | GGNCC | 4 cut(s) | 324, 629, 1384, 1531 |
| SapI | GCTCTTC | 1 cut(s) | 1592 |
| SaqAI | TTAA | 7 cut(s) | 119, 410, 588, 618, 875, 1178, 1376 |
| SatI | GCNGC | 1 cut(s) | 1672 |
| Sau3AI | GATC | 3 cut(s) | 456, 1024, 1489 |
| Sau96I | GGNCC | 4 cut(s) | 324, 629, 1384, 1531 |
| SchI | GAGTC | 2 cut(s) | 139, 1773 |
| ScrFI | CCNGG | 4 cut(s) | 627, 899, 1280, 1529 |
| SduI | GDGCHC | 1 cut(s) | 898 |
| SfaNI | GCATC | 1 cut(s) | 922 |
| SinI | GGWCC | 2 cut(s) | 629, 1384 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| SseBI | AGGCCT | 2 cut(s) | 519, 1278 |
| SsiI | CCGC | 2 cut(s) | 463, 1638 |
| SspI | AATATT | 1 cut(s) | 927 |
| SspMI | CTAG | 4 cut(s) | 365, 1217, 1388, 1789 |
| StuI | AGGCCT | 2 cut(s) | 519, 1278 |
| StyD4I | CCNGG | 4 cut(s) | 625, 897, 1278, 1527 |
| TaaI | ACNGT | 2 cut(s) | 62, 616 |
| TaiI | ACGT | 1 cut(s) | 1032 |
| TaqI | TCGA | 2 cut(s) | 133, 603 |
| TfiI | GAWTC | 5 cut(s) | 84, 351, 475, 1654, 1733 |
| Tru1I | TTAA | 7 cut(s) | 119, 410, 588, 618, 875, 1178, 1376 |
| Tru9I | TTAA | 7 cut(s) | 119, 410, 588, 618, 875, 1178, 1376 |
| TscAI | CASTG | 1 cut(s) | 603 |
| TseFI | GTSAC | 4 cut(s) | 608, 736, 878, 1187 |
| TseI | GCWGC | 1 cut(s) | 1671 |
| Tsp45I | GTSAC | 4 cut(s) | 608, 736, 878, 1187 |
| TspDTI | ATGAA | 7 cut(s) | 66, 76, 633, 898, 966, 1535, 1554 |
| TspGWI | ACGGA | 3 cut(s) | 651, 735, 1429 |
| TspRI | CASTG | 1 cut(s) | 603 |
| VpaK11BI | GGWCC | 2 cut(s) | 629, 1384 |
| XapI | RAATTY | 6 cut(s) | 707, 778, 1120, 1157, 1704, 1746 |
| XmiI | GTMKAC | 1 cut(s) | 1264 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1737 |
| XspI | CTAG | 4 cut(s) | 365, 1217, 1388, 1789 |