RchiOBHm_Chr4g0418351

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000492
Physical Location & Seq
Forward (+)
43771644 .. 43773449
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38834

Sequence Viewer

Length: 378 bp
ATGGCCTGGAAGGGTATTCTTGATAATAGAGATCTTTTAATCCAAGGTATGCTCTGGATTGTTGGTAATGGTACTGACATCAGATTCTGGACTTTCAACTGGGCCTTTTCTTTTCCTTTGATCAATCTTATTTCGACTACTAATAGAATTTCTATTGATATTGATGAGAATGTTAGTGATTATATTGTTAATGGCTGTTGGAATGTGAATAAACTTTCTGTTTTCCTTGATCATGATACAGTTAACTCTATTTTAAGTATTCCTCTTCCTGCTTTGGACTCTAGGGATGAATTTGTTTGGGGGCCGACCTCCAGCGGTATTTTTTCTGTTCTGCCACTTGGCTTCAATGTGATTTGGTTGTTCCCATTCGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

125

Amino Acids

14.2

Weight (kDa)

4.23

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AcsI RAATTY 2 cut(s) 147, 290
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 370, 371
AgsI TTSAA 2 cut(s) 97, 346
AjnI CCWGG 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 3 cut(s) 3, 102, 302
ApoI RAATTY 2 cut(s) 147, 290
AspS9I GGNCC 2 cut(s) 102, 302
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 2 cut(s) 120, 229
BfaI CTAG 1 cut(s) 282
BglII AGATCT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 102, 302
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 371
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 370, 371
BseNI ACTGG 1 cut(s) 104
BshFI GGCC 3 cut(s) 5, 104, 304
BslI CCNNNNNNNGG 2 cut(s) 370, 371
BsnI GGCC 3 cut(s) 5, 104, 304
Bsp143I GATC 3 cut(s) 31, 120, 229
BspACI CCGC 1 cut(s) 315
BspANI GGCC 3 cut(s) 5, 104, 304
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 31, 120, 229
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 270
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 3 cut(s) 34, 123, 232
BstMBI GATC 3 cut(s) 31, 120, 229
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 5, 104, 304
BtsCI GGATG 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 87
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 102, 302
Csp6I GTAC 1 cut(s) 72
CviAII CATG 1 cut(s) 233
CviJI RGCY 5 cut(s) 5, 104, 195, 304, 342
CviKI_1 RGCY 5 cut(s) 5, 104, 195, 304, 342
CviQI GTAC 1 cut(s) 72
DpnI GATC 3 cut(s) 33, 122, 231
DpnII GATC 3 cut(s) 31, 120, 229
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 50, 183, 234
FatI CATG 1 cut(s) 232
FbaI TGATCA 2 cut(s) 120, 229
FokI GGATG 1 cut(s) 299
FspBI CTAG 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 3 cut(s) 5, 104, 304
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 84, 278
HpaI GTTAAC 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 4 cut(s) 20, 55, 88, 233
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 241
Hsp92II CATG 1 cut(s) 236
Ksp22I TGATCA 2 cut(s) 120, 229
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 31, 120, 229
LpnPI CCDG 6 cut(s) 19, 40, 73, 85, 282, 325
MaeI CTAG 1 cut(s) 282
MalI GATC 3 cut(s) 33, 122, 231
MboI GATC 3 cut(s) 31, 120, 229
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 31
MluCI AATT 2 cut(s) 147, 290
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 3 cut(s) 273, 319, 364
MseI TTAA 5 cut(s) 38, 189, 243, 254, 376
MspA1I CMGCKG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NdeII GATC 3 cut(s) 31, 120, 229
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 303
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 84
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 102, 302
PstNI CAGNNNCTG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 5 cut(s) 38, 189, 243, 254, 376
Sau3AI GATC 3 cut(s) 31, 120, 229
Sau96I GGNCC 2 cut(s) 102, 302
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 7
SetI ASST 2 cut(s) 49, 311
Sse9I AATT 2 cut(s) 147, 290
SsiI CCGC 1 cut(s) 315
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 134, 369
TasI AATT 2 cut(s) 147, 290
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 5 cut(s) 38, 189, 243, 254, 376
Tru9I TTAA 5 cut(s) 38, 189, 243, 254, 376
TspDTI ATGAA 1 cut(s) 303
XapI RAATTY 2 cut(s) 147, 290
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.