Rmu_sc0008199.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008199.1
OG0000492
Physical Location & Seq
Reverse (-)
9564 .. 12821
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008199.1_g000002.1.cds

Sequence Viewer

Length: 1020 bp
atgaaagttgtttctcgtgttgtgatcttcaagttgggtggagttgaccttcgtggttttgaagttggcccggcggcacatgggcttcacgtgcaaccgccactggcggcgcgttcgtccattccaggggcagttctttgctcatcctccattcgtcgatacaaacatgtggaagacaaaaggcacctaattaattgggatgaaactgttgacaactatatacaggacaaggcctggaataagggtaagctctccctcttctttgatcataacatcattaatcatattacaagtattcctattcctacaactgaacaggaagatgacttcatttggggaccatcttcaaatggtctcttcaccatcaaatcagctacttggttgcaacttaatacacaagaaaagcacaatcaaattgctcttattagcaaattatggaaactggatatccagccaaaaatcaaactctttggttggctactgctaagaggaagattgaaaacaagagatagactctctaaatttagaatgatagatgacaattcttgccctatgtgtaatactgacaatgaatctgcagaccatctttttggctattgtagttttgctacagaagtatggagattgacaggtatgcctgcaactttgaactggaatgagggatatctcaaagtcttccatgatttgttcctttcccaaccttttaacagtagcctctttgcaaaaataatcacctactgttggaaaatctggaaagccagaaatgataaagtgttcagaaatgcaaacccaaacccacaatctgtggtagcaacttctgctgcgaatatggttaaactcaactttgatggatcagtaaatggaacctctactgctggtggttttgttatacgtgatgttcatggaaggcccctggtagctgccactgaacaagttgaacaaggacacaacagagttgaagttgagggcgactccaaacttgtcattgatgctgtcaataaagtgatacacccaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

339

Amino Acids

38.26

Weight (kDa)

9.11

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AccII CGCG 1 cut(s) 112
AciI CCGC 3 cut(s) 74, 98, 107
AclWI GGATC 1 cut(s) 859
AcsI RAATTY 1 cut(s) 521
AcvI CACGTG 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 126, 741
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 7 cut(s) 31, 62, 348, 499, 649, 938, 959
AjnI CCWGG 3 cut(s) 124, 233, 912
AluBI AGCT 3 cut(s) 250, 374, 920
AluI AGCT 3 cut(s) 250, 374, 920
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 859
AoxI GGCC 3 cut(s) 67, 231, 908
ApeKI GCWGC 2 cut(s) 821, 920
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AseI ATTAAT 2 cut(s) 192, 279
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 68, 338, 909
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 352, 724
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 183
BauI CACGAG 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 180, 667
BbvI GCAGC 2 cut(s) 808, 907
BccI CCATC 4 cut(s) 349, 371, 591, 842
BciT130I CCWGG 3 cut(s) 126, 235, 914
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 576, 609
BisI GCNGC 4 cut(s) 75, 108, 822, 921
BlsI GCNGC 4 cut(s) 76, 109, 823, 922
Bme1390I CCNGG 4 cut(s) 71, 126, 235, 914
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 3 cut(s) 68, 338, 909
BmiI GGNNCC 4 cut(s) 185, 339, 865, 911
BmrFI CCNGG 4 cut(s) 71, 126, 235, 914
BmsI GCATC 1 cut(s) 979
BpiI GAAGAC 2 cut(s) 180, 667
BplI GAGNNNNNCTC 4 cut(s) 498, 530, 956, 988
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 2 cut(s) 91, 893
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 125, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 741
Bse1I ACTGG 3 cut(s) 108, 447, 656
BseBI CCWGG 3 cut(s) 126, 235, 914
BseDI CCNNGG 2 cut(s) 125, 912
BseGI GGATG 2 cut(s) 143, 205
BseLI CCNNNNNNNGG 2 cut(s) 126, 741
BseNI ACTGG 3 cut(s) 108, 447, 656
BseXI GCAGC 2 cut(s) 808, 907
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 69, 233, 910
BshNI GGYRCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 126, 741
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 3 cut(s) 69, 233, 910
Bso31I GGTCTC 1 cut(s) 359
Bsp143I GATC 3 cut(s) 24, 265, 851
BspACI CCGC 3 cut(s) 74, 98, 107
BspANI GGCC 3 cut(s) 69, 233, 910
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 4 cut(s) 185, 339, 865, 911
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 3 cut(s) 108, 447, 656
BssECI CCNNGG 2 cut(s) 125, 912
BssMI GATC 3 cut(s) 24, 265, 851
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 3 cut(s) 126, 235, 914
Bst4CI ACNGT 3 cut(s) 208, 710, 740
Bst6I CTCTTC 2 cut(s) 263, 362
BstAPI GCANNNNNTGC 1 cut(s) 818
BstBAI YACGTR 2 cut(s) 91, 893
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 143, 205
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 27, 268, 854
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 24, 265, 851
BstMWI GCNNNNNNNGC 2 cut(s) 91, 818
BstNI CCWGG 3 cut(s) 126, 235, 914
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 4 cut(s) 69, 124, 233, 912
BstSFI CTRYAG 2 cut(s) 576, 609
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 808, 907
BstV2I GAAGAC 2 cut(s) 180, 667
BstXI CCANNNNNNTGG 1 cut(s) 590
BsuRI GGCC 3 cut(s) 69, 233, 910
BtsCI GGATG 2 cut(s) 143, 205
BtsIMutI CAGTG 2 cut(s) 101, 924
Cac8I GCNNGC 1 cut(s) 639
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 68, 338, 909
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 4 cut(s) 80, 167, 680, 902
DdeI CTNAG 1 cut(s) 485
DpnI GATC 3 cut(s) 26, 267, 853
DpnII GATC 3 cut(s) 24, 265, 851
Eam1104I CTCTTC 2 cut(s) 263, 362
EarI CTCTTC 2 cut(s) 263, 362
Eco147I AGGCCT 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 359
Eco32I GATATC 2 cut(s) 448, 665
Eco47I GGWCC 1 cut(s) 338
Eco72I CACGTG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 909
EcoRII CCWGG 3 cut(s) 124, 233, 912
EcoRV GATATC 2 cut(s) 448, 665
FaeI CATG 4 cut(s) 83, 170, 683, 905
FaqI GGGAC 1 cut(s) 351
FatI CATG 4 cut(s) 79, 166, 679, 901
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 75, 108, 822, 921
FokI GGATG 2 cut(s) 130, 212
Fsp4HI GCNGC 4 cut(s) 75, 108, 822, 921
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 75, 108, 822, 921
HaeIII GGCC 3 cut(s) 69, 233, 910
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 112
Hin1II CATG 4 cut(s) 83, 170, 683, 905
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 46, 211
HindII GTYRAC 2 cut(s) 46, 211
HinfI GANTC 3 cut(s) 513, 572, 971
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 352, 724
Hpy166II GTNNAC 2 cut(s) 46, 211
Hpy188I TCNGA 1 cut(s) 779
Hpy188III TCNNGA 1 cut(s) 751
Hpy8I GTNNAC 2 cut(s) 46, 211
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 59, 900
HpyCH4III ACNGT 3 cut(s) 208, 710, 740
HpyCH4IV ACGT 2 cut(s) 90, 892
HpyCH4V TGCA 6 cut(s) 94, 385, 578, 641, 722, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 818
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 2 cut(s) 90, 892
Hsp92II CATG 4 cut(s) 83, 170, 683, 905
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 24, 265, 851
Lsp1109I GCAGC 2 cut(s) 808, 907
LweI GCATC 1 cut(s) 979
MaeII ACGT 2 cut(s) 90, 892
MalI GATC 3 cut(s) 26, 267, 853
MboI GATC 3 cut(s) 24, 265, 851
MboII GAAGA 8 cut(s) 19, 185, 250, 332, 336, 349, 504, 667
MluCI AATT 6 cut(s) 189, 193, 414, 431, 521, 541
MlyI GAGTC 2 cut(s) 507, 965
MmeI TCCRAC 1 cut(s) 722
MnlI CCTC 7 cut(s) 157, 266, 482, 652, 725, 877, 958
MseI TTAA 5 cut(s) 192, 279, 390, 705, 834
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 4 cut(s) 71, 126, 235, 914
MvaI CCWGG 3 cut(s) 126, 235, 914
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 91, 818
NciI CCSGG 1 cut(s) 71
NdeII GATC 3 cut(s) 24, 265, 851
NlaIII CATG 4 cut(s) 83, 170, 683, 905
NlaIV GGNNCC 4 cut(s) 185, 339, 865, 911
NspI RCATGY 1 cut(s) 170
PceI AGGCCT 1 cut(s) 233
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 4 cut(s) 76, 109, 823, 922
PleI GAGTC 2 cut(s) 507, 965
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 2 cut(s) 507, 965
Ppu21I YACGTR 2 cut(s) 91, 893
PscI ACATGT 1 cut(s) 166
PshBI ATTAAT 2 cut(s) 192, 279
Psp6I CCWGG 3 cut(s) 124, 233, 912
PspCI CACGTG 1 cut(s) 91
PspGI CCWGG 3 cut(s) 124, 233, 912
PspN4I GGNNCC 4 cut(s) 185, 339, 865, 911
PspPI GGNCC 3 cut(s) 68, 338, 909
PstI CTGCAG 1 cut(s) 580
SaqAI TTAA 5 cut(s) 192, 279, 390, 705, 834
SatI GCNGC 4 cut(s) 75, 108, 822, 921
Sau3AI GATC 3 cut(s) 24, 265, 851
Sau96I GGNCC 3 cut(s) 68, 338, 909
SchI GAGTC 2 cut(s) 507, 965
ScrFI CCNGG 4 cut(s) 71, 126, 235, 914
SfaNI GCATC 1 cut(s) 979
SfcI CTRYAG 2 cut(s) 576, 609
SinI GGWCC 1 cut(s) 338
Sse9I AATT 6 cut(s) 189, 193, 414, 431, 521, 541
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 3 cut(s) 74, 98, 107
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 69, 124, 233, 912
TaaI ACNGT 3 cut(s) 208, 710, 740
TaiI ACGT 2 cut(s) 93, 895
TaqI TCGA 1 cut(s) 157
TasI AATT 6 cut(s) 189, 193, 414, 431, 521, 541
TauI GCSGC 2 cut(s) 77, 110
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 5 cut(s) 192, 279, 390, 705, 834
Tru9I TTAA 5 cut(s) 192, 279, 390, 705, 834
TscAI CASTG 2 cut(s) 108, 931
TseI GCWGC 2 cut(s) 821, 920
TspDTI ATGAA 5 cut(s) 17, 216, 319, 585, 890
TspRI CASTG 2 cut(s) 108, 931
VpaK11BI GGWCC 1 cut(s) 338
VspI ATTAAT 2 cut(s) 192, 279
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.