ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1507, 1567 |
| Acc65I | GGTACC | 1 cut(s) | 300 |
| AccB1I | GGYRCC | 2 cut(s) | 300, 836 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2281 |
| AccI | GTMKAC | 1 cut(s) | 1689 |
| AccIII | TCCGGA | 1 cut(s) | 1372 |
| AciI | CCGC | 2 cut(s) | 892, 2207 |
| AclWI | GGATC | 7 cut(s) | 8, 39, 165, 178, 800, 1600, 1964 |
| AcsI | RAATTY | 8 cut(s) | 817, 852, 1196, 1326, 1380, 2010, 2043, 2293 |
| AcuI | CTGAAG | 3 cut(s) | 90, 1154, 1946 |
| AfaI | GTAC | 4 cut(s) | 302, 470, 568, 793 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 26, 74, 659, 1989, 1990, 2281 |
| AgsI | TTSAA | 9 cut(s) | 377, 496, 986, 1007, 1231, 1639, 1724, 2023, 2263 |
| AhlI | ACTAGT | 1 cut(s) | 149 |
| AjnI | CCWGG | 4 cut(s) | 369, 1508, 1988, 2243 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 844, 876, 1127, 1159, 1194, 1226 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 48, 80 |
| AluBI | AGCT | 7 cut(s) | 74, 89, 233, 1019, 1300, 1589, 1840 |
| AluI | AGCT | 7 cut(s) | 74, 89, 233, 1019, 1300, 1589, 1840 |
| Alw26I | GTCTC | 3 cut(s) | 577, 1300, 1550 |
| AlwI | GGATC | 7 cut(s) | 8, 39, 165, 178, 800, 1600, 1964 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 133 |
| Ama87I | CYCGRG | 1 cut(s) | 1366 |
| Aor13HI | TCCGGA | 1 cut(s) | 1372 |
| AoxI | GGCC | 3 cut(s) | 396, 1101, 1980 |
| ApeKI | GCWGC | 1 cut(s) | 1580 |
| ApoI | RAATTY | 8 cut(s) | 817, 852, 1196, 1326, 1380, 2010, 2043, 2293 |
| AseI | ATTAAT | 3 cut(s) | 504, 1776, 1803 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 531, 648 |
| Asp718I | GGTACC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 7 cut(s) | 77, 396, 546, 674, 1370, 1916, 1981 |
| AsuC2I | CCSGG | 1 cut(s) | 1877 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 1366 |
| AvaII | GGWCC | 5 cut(s) | 77, 546, 674, 1370, 1916 |
| BaeGI | GKGCMC | 1 cut(s) | 1039 |
| BanI | GGYRCC | 2 cut(s) | 300, 836 |
| BbsI | GAAGAC | 1 cut(s) | 2157 |
| BbvCI | CCTCAGC | 1 cut(s) | 1020 |
| BbvI | GCAGC | 1 cut(s) | 1567 |
| BccI | CCATC | 7 cut(s) | 136, 818, 836, 1370, 1664, 1992, 2169 |
| BciT130I | CCWGG | 4 cut(s) | 371, 1510, 1990, 2245 |
| BciVI | GTATCC | 3 cut(s) | 1642, 1883, 2264 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BcnI | CCSGG | 1 cut(s) | 1877 |
| BcoDI | GTCTC | 3 cut(s) | 577, 1300, 1550 |
| BcuI | ACTAGT | 1 cut(s) | 149 |
| BfmI | CTRYAG | 1 cut(s) | 2134 |
| BfuAI | ACCTGC | 2 cut(s) | 1507, 1567 |
| BfuI | GTATCC | 3 cut(s) | 1642, 1883, 2264 |
| BisI | GCNGC | 1 cut(s) | 1581 |
| BlpI | GCTNAGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 1582 |
| BmcAI | AGTACT | 1 cut(s) | 568 |
| Bme1390I | CCNGG | 5 cut(s) | 371, 1510, 1877, 1990, 2245 |
| Bme18I | GGWCC | 5 cut(s) | 77, 546, 674, 1370, 1916 |
| BmeT110I | CYCGRG | 1 cut(s) | 1366 |
| BmgT120I | GGNCC | 7 cut(s) | 77, 396, 546, 674, 1370, 1916, 1981 |
| BmiI | GGNNCC | 7 cut(s) | 302, 451, 676, 838, 1371, 1881, 1917 |
| BmrFI | CCNGG | 5 cut(s) | 371, 1510, 1877, 1990, 2245 |
| BmrI | ACTGGG | 4 cut(s) | 1417, 1496, 1636, 1723 |
| BmsI | GCATC | 4 cut(s) | 120, 379, 1324, 2230 |
| BmuI | ACTGGG | 4 cut(s) | 1417, 1496, 1636, 1723 |
| BoxI | GACNNNNGTC | 1 cut(s) | 672 |
| BpiI | GAAGAC | 1 cut(s) | 2157 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1020 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 90 |
| BpuMI | CCSGG | 1 cut(s) | 1877 |
| BsaI | GGTCTC | 2 cut(s) | 1300, 1550 |
| BsaJI | CCNNGG | 9 cut(s) | 670, 1047, 1365, 1464, 1537, 1659, 1749, 1988, 1989 |
| BsaWI | WCCGGW | 1 cut(s) | 1372 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 48, 78 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 26, 74, 659, 1989, 1990, 2281 |
| Bse1I | ACTGG | 6 cut(s) | 1157, 1310, 1412, 1502, 1631, 1718 |
| BseAI | TCCGGA | 1 cut(s) | 1372 |
| BseBI | CCWGG | 4 cut(s) | 371, 1510, 1990, 2245 |
| BseDI | CCNNGG | 9 cut(s) | 670, 1047, 1365, 1464, 1537, 1659, 1749, 1988, 1989 |
| BseGI | GGATG | 7 cut(s) | 10, 43, 906, 922, 1327, 1381, 1984 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 26, 74, 659, 1989, 1990, 2281 |
| BseMII | CTCAG | 6 cut(s) | 623, 777, 1011, 1074, 1112, 2280 |
| BseNI | ACTGG | 6 cut(s) | 1157, 1310, 1412, 1502, 1631, 1718 |
| BseRI | GAGGAG | 3 cut(s) | 99, 1207, 1645 |
| BseSI | GKGCMC | 1 cut(s) | 1039 |
| BseXI | GCAGC | 1 cut(s) | 1567 |
| BshFI | GGCC | 3 cut(s) | 398, 1103, 1982 |
| BshNI | GGYRCC | 2 cut(s) | 300, 836 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1366 |
| BsiSI | CCGG | 2 cut(s) | 1373, 1877 |
| BslFI | GGGAC | 5 cut(s) | 660, 1085, 1829, 2082, 2163 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 26, 74, 659, 1989, 1990, 2281 |
| BsmAI | GTCTC | 3 cut(s) | 577, 1300, 1550 |
| BsmFI | GGGAC | 5 cut(s) | 660, 1085, 1829, 2082, 2163 |
| BsmI | GAATGC | 1 cut(s) | 2209 |
| BsnI | GGCC | 3 cut(s) | 398, 1103, 1982 |
| Bso31I | GGTCTC | 2 cut(s) | 1300, 1550 |
| BsoBI | CYCGRG | 1 cut(s) | 1366 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1039 |
| Bsp13I | TCCGGA | 1 cut(s) | 1372 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 90 |
| Bsp19I | CCATGG | 2 cut(s) | 670, 1464 |
| BspACI | CCGC | 2 cut(s) | 892, 2207 |
| BspANI | GGCC | 3 cut(s) | 398, 1103, 1982 |
| BspCNI | CTCAG | 6 cut(s) | 622, 776, 1012, 1075, 1111, 2281 |
| BspEI | TCCGGA | 1 cut(s) | 1372 |
| BspHI | TCATGA | 4 cut(s) | 247, 385, 1330, 2001 |
| BspLI | GGNNCC | 7 cut(s) | 302, 451, 676, 838, 1371, 1881, 1917 |
| BspMI | ACCTGC | 2 cut(s) | 1507, 1567 |
| BspPI | GGATC | 7 cut(s) | 8, 39, 165, 178, 800, 1600, 1964 |
| BspQI | GCTCTTC | 1 cut(s) | 953 |
| BspT107I | GGYRCC | 2 cut(s) | 300, 836 |
| BspTNI | GGTCTC | 2 cut(s) | 1300, 1550 |
| BsrI | ACTGG | 6 cut(s) | 1157, 1310, 1412, 1502, 1631, 1718 |
| BssECI | CCNNGG | 9 cut(s) | 670, 1047, 1365, 1464, 1537, 1659, 1749, 1988, 1989 |
| BssT1I | CCWWGG | 6 cut(s) | 670, 1047, 1464, 1537, 1659, 1749 |
| Bst2UI | CCWGG | 4 cut(s) | 371, 1510, 1990, 2245 |
| Bst4CI | ACNGT | 2 cut(s) | 2073, 2135 |
| Bst6I | CTCTTC | 3 cut(s) | 110, 953, 2171 |
| BstDSI | CCRYGG | 2 cut(s) | 670, 1464 |
| BstEII | GGTNACC | 1 cut(s) | 881 |
| BstF5I | GGATG | 7 cut(s) | 10, 43, 906, 922, 1327, 1381, 1984 |
| BstMAI | GTCTC | 3 cut(s) | 577, 1300, 1550 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1586 |
| BstNI | CCWGG | 4 cut(s) | 371, 1510, 1990, 2245 |
| BstNSI | RCATGY | 2 cut(s) | 65, 1936 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 672 |
| BstPI | GGTNACC | 1 cut(s) | 881 |
| BstSCI | CCNGG | 5 cut(s) | 369, 1508, 1875, 1988, 2243 |
| BstSFI | CTRYAG | 1 cut(s) | 2134 |
| BstSLI | GKGCMC | 1 cut(s) | 1039 |
| BstV1I | GCAGC | 1 cut(s) | 1567 |
| BstV2I | GAAGAC | 1 cut(s) | 2157 |
| BstX2I | RGATCY | 2 cut(s) | 31, 1605 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1509 |
| BstYI | RGATCY | 2 cut(s) | 31, 1605 |
| BsuI | GTATCC | 3 cut(s) | 1642, 1883, 2264 |
| BsuRI | GGCC | 3 cut(s) | 398, 1103, 1982 |
| BtgI | CCRYGG | 2 cut(s) | 670, 1464 |
| BtsCI | GGATG | 7 cut(s) | 10, 43, 906, 922, 1327, 1381, 1984 |
| BtsI | GCAGTG | 1 cut(s) | 1239 |
| BtsIMutI | CAGTG | 5 cut(s) | 617, 1239, 1611, 2131, 2286 |
| BveI | ACCTGC | 2 cut(s) | 1507, 1567 |
| CaiI | CAGNNNCTG | 1 cut(s) | 133 |
| CciI | TCATGA | 4 cut(s) | 247, 385, 1330, 2001 |
| Cfr13I | GGNCC | 7 cut(s) | 77, 396, 546, 674, 1370, 1916, 1981 |
| CsiI | ACCWGGT | 1 cut(s) | 369 |
| Csp6I | GTAC | 4 cut(s) | 301, 469, 567, 792 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 6, 41 |
| CviQI | GTAC | 4 cut(s) | 301, 469, 567, 792 |
| DraI | TTTAAA | 1 cut(s) | 1737 |
| Eam1104I | CTCTTC | 3 cut(s) | 110, 953, 2171 |
| EarI | CTCTTC | 3 cut(s) | 110, 953, 2171 |
| Eco130I | CCWWGG | 6 cut(s) | 670, 1047, 1464, 1537, 1659, 1749 |
| Eco31I | GGTCTC | 2 cut(s) | 1300, 1550 |
| Eco47I | GGWCC | 5 cut(s) | 77, 546, 674, 1370, 1916 |
| Eco57I | CTGAAG | 3 cut(s) | 90, 1154, 1946 |
| Eco88I | CYCGRG | 1 cut(s) | 1366 |
| Eco91I | GGTNACC | 1 cut(s) | 881 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1916 |
| EcoO65I | GGTNACC | 1 cut(s) | 881 |
| EcoRI | GAATTC | 2 cut(s) | 1196, 1380 |
| EcoRII | CCWGG | 4 cut(s) | 369, 1508, 1988, 2243 |
| EcoT14I | CCWWGG | 6 cut(s) | 670, 1047, 1464, 1537, 1659, 1749 |
| ErhI | CCWWGG | 6 cut(s) | 670, 1047, 1464, 1537, 1659, 1749 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 83, 115, 1127, 1159 |
| FaqI | GGGAC | 5 cut(s) | 660, 1085, 1829, 2082, 2163 |
| FauI | CCCGC | 1 cut(s) | 2200 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| FblI | GTMKAC | 1 cut(s) | 1689 |
| Fnu4HI | GCNGC | 1 cut(s) | 1581 |
| FokI | GGATG | 7 cut(s) | 17, 50, 893, 929, 1334, 1388, 1971 |
| Fsp4HI | GCNGC | 1 cut(s) | 1581 |
| GluI | GCNGC | 1 cut(s) | 1581 |
| HaeIII | GGCC | 3 cut(s) | 398, 1103, 1982 |
| HapII | CCGG | 2 cut(s) | 1373, 1877 |
| HincII | GTYRAC | 2 cut(s) | 487, 1342 |
| HindII | GTYRAC | 2 cut(s) | 487, 1342 |
| HinfI | GANTC | 4 cut(s) | 255, 496, 1354, 1664 |
| HpaI | GTTAAC | 1 cut(s) | 1342 |
| HpaII | CCGG | 2 cut(s) | 1373, 1877 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 5 cut(s) | 469, 487, 1342, 1690, 2284 |
| Hpy188I | TCNGA | 8 cut(s) | 667, 766, 961, 1134, 1359, 1556, 1669, 1965 |
| Hpy8I | GTNNAC | 5 cut(s) | 469, 487, 1342, 1690, 2284 |
| HpyAV | CCTTC | 9 cut(s) | 109, 304, 521, 896, 1107, 1503, 1645, 1929, 2260 |
| HpyCH4III | ACNGT | 2 cut(s) | 2073, 2135 |
| HpyCH4V | TGCA | 6 cut(s) | 262, 524, 636, 922, 1286, 1562 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1586 |
| Kpn2I | TCCGGA | 1 cut(s) | 1372 |
| KpnI | GGTACC | 1 cut(s) | 304 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| KspAI | GTTAAC | 1 cut(s) | 1342 |
| LguI | GCTCTTC | 1 cut(s) | 953 |
| LmnI | GCTCC | 4 cut(s) | 86, 449, 864, 1220 |
| Lsp1109I | GCAGC | 1 cut(s) | 1567 |
| LweI | GCATC | 4 cut(s) | 120, 379, 1324, 2230 |
| MabI | ACCWGGT | 1 cut(s) | 369 |
| MaeIII | GTNAC | 6 cut(s) | 407, 421, 595, 881, 1312, 2114 |
| MflI | RGATCY | 2 cut(s) | 31, 1605 |
| MhlI | GDGCHC | 1 cut(s) | 1039 |
| MlyI | GAGTC | 1 cut(s) | 1363 |
| MmeI | TCCRAC | 2 cut(s) | 1580, 1659 |
| MroI | TCCGGA | 1 cut(s) | 1372 |
| MroXI | GAANNNNTTC | 2 cut(s) | 531, 648 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1244 |
| MspA1I | CMGCKG | 1 cut(s) | 1300 |
| MspI | CCGG | 2 cut(s) | 1373, 1877 |
| MspR9I | CCNGG | 5 cut(s) | 371, 1510, 1877, 1990, 2245 |
| Mva1269I | GAATGC | 1 cut(s) | 2209 |
| MvaI | CCWGG | 4 cut(s) | 371, 1510, 1990, 2245 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1586 |
| NciI | CCSGG | 1 cut(s) | 1877 |
| NcoI | CCATGG | 2 cut(s) | 670, 1464 |
| NlaIV | GGNNCC | 7 cut(s) | 302, 451, 676, 838, 1371, 1881, 1917 |
| NmuCI | GTSAC | 3 cut(s) | 407, 1312, 2114 |
| NspI | RCATGY | 2 cut(s) | 65, 1936 |
| PagI | TCATGA | 4 cut(s) | 247, 385, 1330, 2001 |
| PasI | CCCWGGG | 1 cut(s) | 1989 |
| PciSI | GCTCTTC | 1 cut(s) | 953 |
| PctI | GAATGC | 1 cut(s) | 2209 |
| PdmI | GAANNNNTTC | 2 cut(s) | 531, 648 |
| PfeI | GAWTC | 3 cut(s) | 255, 496, 1664 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2281 |
| PkrI | GCNGC | 1 cut(s) | 1582 |
| PleI | GAGTC | 1 cut(s) | 1362 |
| PpsI | GAGTC | 1 cut(s) | 1362 |
| PpuMI | RGGWCCY | 1 cut(s) | 1916 |
| PshAI | GACNNNNGTC | 1 cut(s) | 672 |
| PshBI | ATTAAT | 3 cut(s) | 504, 1776, 1803 |
| Psp5II | RGGWCCY | 1 cut(s) | 1916 |
| Psp6I | CCWGG | 4 cut(s) | 369, 1508, 1988, 2243 |
| PspEI | GGTNACC | 1 cut(s) | 881 |
| PspGI | CCWGG | 4 cut(s) | 369, 1508, 1988, 2243 |
| PspN4I | GGNNCC | 7 cut(s) | 302, 451, 676, 838, 1371, 1881, 1917 |
| PspPI | GGNCC | 7 cut(s) | 77, 396, 546, 674, 1370, 1916, 1981 |
| PspPPI | RGGWCCY | 1 cut(s) | 1916 |
| PstNI | CAGNNNCTG | 1 cut(s) | 133 |
| PsuI | RGATCY | 2 cut(s) | 31, 1605 |
| PvuII | CAGCTG | 1 cut(s) | 1300 |
| RsaI | GTAC | 4 cut(s) | 302, 470, 568, 793 |
| RsaNI | GTAC | 4 cut(s) | 301, 469, 567, 792 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1244 |
| SapI | GCTCTTC | 1 cut(s) | 953 |
| SatI | GCNGC | 1 cut(s) | 1581 |
| Sau96I | GGNCC | 7 cut(s) | 77, 396, 546, 674, 1370, 1916, 1981 |
| ScaI | AGTACT | 1 cut(s) | 568 |
| SchI | GAGTC | 1 cut(s) | 1363 |
| ScrFI | CCNGG | 5 cut(s) | 371, 1510, 1877, 1990, 2245 |
| SduI | GDGCHC | 1 cut(s) | 1039 |
| SexAI | ACCWGGT | 1 cut(s) | 369 |
| SfaNI | GCATC | 4 cut(s) | 120, 379, 1324, 2230 |
| SfcI | CTRYAG | 1 cut(s) | 2134 |
| SinI | GGWCC | 5 cut(s) | 77, 546, 674, 1370, 1916 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1244 |
| SpeI | ACTAGT | 1 cut(s) | 149 |
| SsiI | CCGC | 2 cut(s) | 892, 2207 |
| SspI | AATATT | 1 cut(s) | 2026 |
| StyD4I | CCNGG | 5 cut(s) | 369, 1508, 1875, 1988, 2243 |
| StyI | CCWWGG | 6 cut(s) | 670, 1047, 1464, 1537, 1659, 1749 |
| TaaI | ACNGT | 2 cut(s) | 2073, 2135 |
| TaqI | TCGA | 3 cut(s) | 499, 850, 1346 |
| TatI | WGTACW | 3 cut(s) | 468, 566, 791 |
| TfiI | GAWTC | 3 cut(s) | 255, 496, 1664 |
| TscAI | CASTG | 5 cut(s) | 617, 1246, 1618, 2138, 2293 |
| TseFI | GTSAC | 3 cut(s) | 407, 1312, 2114 |
| TseI | GCWGC | 1 cut(s) | 1580 |
| Tsp45I | GTSAC | 3 cut(s) | 407, 1312, 2114 |
| TspRI | CASTG | 5 cut(s) | 617, 1246, 1618, 2138, 2293 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2281 |
| VpaK11BI | GGWCC | 5 cut(s) | 77, 546, 674, 1370, 1916 |
| VspI | ATTAAT | 3 cut(s) | 504, 1776, 1803 |
| XapI | RAATTY | 8 cut(s) | 817, 852, 1196, 1326, 1380, 2010, 2043, 2293 |
| XbaI | TCTAGA | 2 cut(s) | 284, 2189 |
| XceI | RCATGY | 2 cut(s) | 65, 1936 |
| XmiI | GTMKAC | 1 cut(s) | 1689 |
| XmnI | GAANNNNTTC | 2 cut(s) | 531, 648 |
| ZrmI | AGTACT | 1 cut(s) | 568 |