Rmu_sc0008563.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008563.1
OG0000492
Physical Location & Seq
Forward (+)
33270 .. 33899
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008563.1_g000009.1.cds

Sequence Viewer

Length: 630 bp
atgtttggtttgttgctgctgagaggaacactgaaaacaagggacagattatccagatttggaatgattactgataactcttgccctatgtgcaatactgacaatgaaactgcagatcacctttttggttgctgtagtttcaccagcgaagtgtggagactatccagcatgcctccaaccctaaactggtatgaaggctacactaaagtcttccaggatctttttctttctggatcttatgataaaagcctctttgcaaaaatgattgtctcatgctggcaaatttggaaggccaaaaatgacaaagtgtttagaagtggaagtccaaatccttattctgtggttgtagcttcggctgtagtcctcactactaccacgagcttaaatggtcaggcagatggagttgtttctcaaaaccatcctcccaccatcaggtggtcttctccttctgcttgtaccgtaaaactgaattttgatggatctgttagcagttcttttgcgggcggttttattatatgtgatgtccatggcagaccacttgtagcaactaccagaaggatcggtacgtactacaaaggttcctttagtggaggctcttgctctcagggatgggcttctttgtgcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.88

Weight (kDa)

8.89

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 435
AciI CCGC 2 cut(s) 500, 504
AclWI GGATC 4 cut(s) 225, 241, 487, 566
AcsI RAATTY 2 cut(s) 282, 469
AfaI GTAC 3 cut(s) 457, 565, 569
AfiI CCNNNNNNNGG 3 cut(s) 186, 432, 435
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 2 cut(s) 350, 381
AluI AGCT 2 cut(s) 350, 381
Alw26I GTCTC 2 cut(s) 151, 274
AlwI GGATC 4 cut(s) 225, 241, 487, 566
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 282, 469
AsuHPI GGTGA 2 cut(s) 110, 133
BarI GAAGNNNNNNTAC 2 cut(s) 547, 579
BauI CACGAG 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 202, 432
BbvI GCAGC 1 cut(s) 3
BccI CCATC 5 cut(s) 392, 426, 437, 470, 603
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 151, 274
BfmI CTRYAG 3 cut(s) 111, 133, 357
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 2 cut(s) 202, 432
BsaAI YACGTR 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 432, 435
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 418, 614
BseLI CCNNNNNNNGG 3 cut(s) 186, 432, 435
BseMII CTCAG 2 cut(s) 11, 617
BseNI ACTGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 1 cut(s) 293
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 186, 432, 435
BsmAI GTCTC 2 cut(s) 151, 274
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 5 cut(s) 115, 217, 233, 479, 558
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 2 cut(s) 500, 504
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 2 cut(s) 12, 616
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 4 cut(s) 225, 241, 487, 566
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 5 cut(s) 115, 217, 233, 479, 558
BssSI CACGAG 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 170, 278, 502
BstDEI CTNAG 2 cut(s) 20, 603
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 418, 614
BstKTI GATC 5 cut(s) 118, 220, 236, 482, 561
BstMAI GTCTC 2 cut(s) 151, 274
BstMBI GATC 5 cut(s) 115, 217, 233, 479, 558
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 3 cut(s) 111, 133, 357
BstSNI TACGTA 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 3
BstV2I GAAGAC 2 cut(s) 202, 432
BstX2I RGATCY 3 cut(s) 217, 233, 479
BstYI RGATCY 3 cut(s) 217, 233, 479
BsuRI GGCC 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 2 cut(s) 418, 614
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 170, 278, 502
Csp6I GTAC 3 cut(s) 456, 564, 568
CviAII CATG 3 cut(s) 169, 273, 527
CviJI RGCY 8 cut(s) 198, 249, 293, 350, 356, 381, 594, 614
CviKI_1 RGCY 8 cut(s) 198, 249, 293, 350, 356, 381, 594, 614
CviQI GTAC 3 cut(s) 456, 564, 568
DdeI CTNAG 2 cut(s) 20, 603
DpnI GATC 5 cut(s) 117, 219, 235, 481, 560
DpnII GATC 5 cut(s) 115, 217, 233, 479, 558
Eco105I TACGTA 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 3 cut(s) 172, 276, 530
FaiI YATR 8 cut(s) 89, 170, 192, 240, 274, 515, 517, 528
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 168, 272, 526
FauI CCCGC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 2 cut(s) 405, 621
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 293
Hin1II CATG 3 cut(s) 172, 276, 530
HphI GGTGA 2 cut(s) 110, 133
Hpy188I TCNGA 1 cut(s) 629
Hpy188III TCNNGA 2 cut(s) 54, 231
HpyAV CCTTC 4 cut(s) 188, 283, 456, 549
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 3 cut(s) 93, 113, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 20, 603
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 3 cut(s) 172, 276, 530
Kzo9I GATC 5 cut(s) 115, 217, 233, 479, 558
Lsp1109I GCAGC 1 cut(s) 3
MaeII ACGT 1 cut(s) 566
MalI GATC 5 cut(s) 117, 219, 235, 481, 560
MboI GATC 5 cut(s) 115, 217, 233, 479, 558
MboII GAAGA 2 cut(s) 202, 432
MflI RGATCY 3 cut(s) 217, 233, 479
MluCI AATT 2 cut(s) 282, 469
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 6 cut(s) 17, 183, 260, 374, 432, 584
MseI TTAA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 526
NdeII GATC 5 cut(s) 115, 217, 233, 479, 558
NlaIII CATG 3 cut(s) 172, 276, 530
NlaIV GGNNCC 1 cut(s) 580
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 580
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 3 cut(s) 217, 233, 479
RsaI GTAC 3 cut(s) 457, 565, 569
RsaNI GTAC 3 cut(s) 456, 564, 568
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 5 cut(s) 115, 217, 233, 479, 558
ScrFI CCNGG 1 cut(s) 215
SetI ASST 6 cut(s) 123, 352, 383, 437, 569, 580
SfcI CTRYAG 3 cut(s) 111, 133, 357
SnaBI TACGTA 1 cut(s) 567
SphI GCATGC 1 cut(s) 172
Sse9I AATT 2 cut(s) 282, 469
SsiI CCGC 2 cut(s) 500, 504
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 569
TasI AATT 2 cut(s) 282, 469
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 120, 207
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 435
XapI RAATTY 2 cut(s) 282, 469
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.