RchiOBHm_Chr5g0060311

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000492
Physical Location & Seq
Reverse (-)
65461861 .. 65463647
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33678

Sequence Viewer

Length: 375 bp
ATGATCTGGGTTCCTATTGGGAATGGTAAGTTTACTATTAAATCTGCTTCCAATCTTTTGGTTCAACGTAATGTTGCTCATTCTAAATCTAAGTTACTTATGAGGATGTGGAAAACTAATTTGCCTTCTAAAGTTAAAGTAATGGCCTGGCAGATGATAAGAAATCGACTTTCCACAAGAGATAGAGTTTTCTCAAATCTGTATATTGATAGAAGCTGTTCTTTCTGTGATTCTCAAGTTGAGGATTTGGATCATCTCTTTTTACATTGTCCATTCACTAAAGAAGTTTGGAAGTTGACTTTTCCTACTTTTTCTATGAATTCTTGGAATCAAGGCTTTGTTAACTTGGCTAGATTATCTTTCTTCTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

124

Amino Acids

14.63

Weight (kDa)

10.19

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 11 - 97 9.6e-21 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 319
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 249
BshFI GGCC 1 cut(s) 146
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 3, 250
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 258
BssMI GATC 2 cut(s) 3, 250
Bst2UI CCWGG 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 2 cut(s) 6, 253
BstMBI GATC 2 cut(s) 3, 250
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 111
CviAII CATG 1 cut(s) 372
CviJI RGCY 4 cut(s) 146, 216, 336, 350
CviKI_1 RGCY 4 cut(s) 146, 216, 336, 350
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 5, 252
DpnII GATC 2 cut(s) 3, 250
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 375
FaiI YATR 4 cut(s) 101, 204, 317, 373
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 1 cut(s) 371
FokI GGATG 1 cut(s) 118
FspBI CTAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 1 cut(s) 375
HincII GTYRAC 2 cut(s) 297, 343
HindII GTYRAC 2 cut(s) 297, 343
HinfI GANTC 2 cut(s) 230, 328
HpaI GTTAAC 1 cut(s) 343
Hpy166II GTNNAC 3 cut(s) 33, 297, 343
Hpy8I GTNNAC 3 cut(s) 33, 297, 343
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 3, 250
LpnPI CCDG 2 cut(s) 133, 160
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 5, 252
MboI GATC 2 cut(s) 3, 250
MboII GAAGA 1 cut(s) 355
MluCI AATT 2 cut(s) 118, 319
MnlI CCTC 2 cut(s) 96, 235
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 3 cut(s) 39, 135, 342
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
NdeII GATC 2 cut(s) 3, 250
NlaIII CATG 1 cut(s) 375
NlaIV GGNNCC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 230, 328
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 39, 135, 342
Sau3AI GATC 2 cut(s) 3, 250
ScrFI CCNGG 1 cut(s) 148
SetI ASST 2 cut(s) 70, 218
SgeI CNNG 9 cut(s) 19, 159, 160, 189, 248, 336, 344, 358, 363
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 118, 319
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 146
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 118, 319
TfiI GAWTC 2 cut(s) 230, 328
Tru1I TTAA 3 cut(s) 39, 135, 342
Tru9I TTAA 3 cut(s) 39, 135, 342
TspDTI ATGAA 1 cut(s) 332
XapI RAATTY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.