Rmu_sc0009777.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009777.1
OG0000492
Physical Location & Seq
Reverse (-)
19022 .. 20122
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009777.1_g000007.1.cds

Sequence Viewer

Length: 1101 bp
atgagatggataattagttcgggcaaggatgttaagttttggacttttaactgggtttttgagtttcctttattcaatcttttggatgatgctgctaaggctgctgttgatttaaatgaatctgttagtgactatatcacttttgggaactggaatgttcaaaagttggcttcggttttggatcagcatattattgaccatattgttggcattcctattccggtttcagagttgaaagaccattttgtttggggtcctacagcagatgtttctttctccattaaatctgctacttggctccaatgcaattctaattctcatagtcagacttctattctaaacaaaatgtggaagcttaaccttcccctgaaagttaaaagttttgcttggttgttttttaggggaagactgaaaaccagggcttacattggtcgttataatcatgctatggtttcttcttgtgcttattgtggaacaggtttggacgactgcaaccatcttttccattcctgttcttttgctagtcaaatcaagagtttggtgcccaacttaccttctcctacaagattttccaatctctcggactggattttccatttgtttgataaagagtcctgtaccactattgaagattgtattttgttgtgctggcaaatttggggggcaaggaacaacttcattttcaacaattctcttgcttccccaaatagcatcactctctcggctgcctcagttggctacaactatagaagaaacaatcagcctgcttcaaagacggtttcttcttcttcaaccaaccctatcatatggaaacctcatcctgttgtcttctttaaactcaactttgatggttcggttaaacctcacggcagggctgctgtgggattcattatcagggactctaatagtaggcctatcctggcgggtgcccgtacgcttggtgtcacgtcagttcctattgtggaaggttgtgctctcaaagatggccttctctggcgcttcgtcataacatcacaaaaattcaagtggaaggtgactcgcttcttattatcaactgcattaatagagtttgtgccactccttggagaatcagatccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

366

Amino Acids

41.21

Weight (kDa)

9.18

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 2 cut(s) 541, 926
AccB7I CCANNNNNTGG 1 cut(s) 1082
AciI CCGC 1 cut(s) 923
AclWI GGATC 2 cut(s) 189, 1088
AcsI RAATTY 2 cut(s) 654, 1019
AfaI GTAC 2 cut(s) 619, 934
AfiI CCNNNNNNNGG 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 76, 161, 235, 629, 685, 771, 792, 1024
AjiI CACGTC 1 cut(s) 948
AjnI CCWGG 2 cut(s) 416, 918
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw21I GWGCWC 1 cut(s) 976
AlwI GGATC 2 cut(s) 189, 1088
AoxI GGCC 2 cut(s) 911, 985
ApeKI GCWGC 4 cut(s) 92, 101, 725, 875
ApoI RAATTY 2 cut(s) 654, 1019
AseI ATTAAT 1 cut(s) 1061
Asp700I GAANNNNTTC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 999
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 1045
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 2 cut(s) 546, 931
BanI GGYRCC 2 cut(s) 541, 926
BbsI GAAGAC 2 cut(s) 412, 820
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 4 cut(s) 79, 88, 712, 862
BccI CCATC 3 cut(s) 504, 842, 977
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 2 cut(s) 418, 920
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 2 cut(s) 258, 745
BfoI RGCGCY 1 cut(s) 1000
BisI GCNGC 4 cut(s) 93, 102, 726, 876
BlsI GCNGC 4 cut(s) 94, 103, 727, 877
Bme1390I CCNGG 2 cut(s) 418, 920
Bme18I GGWCC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 948
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 4 cut(s) 255, 299, 543, 928
BmrFI CCNGG 2 cut(s) 418, 920
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 79, 720
BmuI ACTGGG 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 412, 820
Bpu10I CCTNAGC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 417, 1081
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 1082
Bse1I ACTGG 3 cut(s) 56, 155, 590
BseBI CCWGG 2 cut(s) 418, 920
BseDI CCNNGG 2 cut(s) 417, 1081
BseGI GGATG 3 cut(s) 34, 91, 817
BseLI CCNNNNNNNGG 1 cut(s) 1082
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 3 cut(s) 56, 155, 590
BseSI GKGCMC 2 cut(s) 546, 931
BseXI GCAGC 4 cut(s) 79, 88, 712, 862
BshFI GGCC 2 cut(s) 913, 987
BshNI GGYRCC 2 cut(s) 541, 926
BsiHKAI GWGCWC 1 cut(s) 976
BsiSI CCGG 1 cut(s) 221
BsiWI CGTACG 1 cut(s) 932
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 1 cut(s) 1082
BsmFI GGGAC 1 cut(s) 911
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 2 cut(s) 913, 987
Bsp1286I GDGCHC 3 cut(s) 546, 931, 976
Bsp143I GATC 2 cut(s) 181, 1093
BspACI CCGC 1 cut(s) 923
BspANI GGCC 2 cut(s) 913, 987
BspCNI CTCAG 1 cut(s) 743
BspLI GGNNCC 4 cut(s) 255, 299, 543, 928
BspPI GGATC 2 cut(s) 189, 1088
BspT107I GGYRCC 2 cut(s) 541, 926
BsrI ACTGG 3 cut(s) 56, 155, 590
BssECI CCNNGG 2 cut(s) 417, 1081
BssMI GATC 2 cut(s) 181, 1093
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 2 cut(s) 418, 920
Bst4CI ACNGT 1 cut(s) 778
BstC8I GCNNGC 2 cut(s) 650, 765
BstDEI CTNAG 2 cut(s) 96, 730
BstF5I GGATG 3 cut(s) 34, 91, 817
BstH2I RGCGCY 1 cut(s) 1000
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 2 cut(s) 184, 1096
BstMBI GATC 2 cut(s) 181, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 98, 101
BstNI CCWGG 2 cut(s) 418, 920
BstSCI CCNGG 2 cut(s) 416, 918
BstSFI CTRYAG 2 cut(s) 258, 745
BstSLI GKGCMC 2 cut(s) 546, 931
BstV1I GCAGC 4 cut(s) 79, 88, 712, 862
BstV2I GAAGAC 2 cut(s) 412, 820
BstX2I RGATCY 1 cut(s) 1093
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 1 cut(s) 1093
BsuRI GGCC 2 cut(s) 913, 987
BtrI CACGTC 1 cut(s) 948
BtsCI GGATG 3 cut(s) 34, 91, 817
Cac8I GCNNGC 2 cut(s) 650, 765
CfoI GCGC 1 cut(s) 999
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 618, 933
CviAII CATG 1 cut(s) 443
CviQI GTAC 2 cut(s) 618, 933
DdeI CTNAG 2 cut(s) 96, 730
DpnI GATC 2 cut(s) 183, 1095
DpnII GATC 2 cut(s) 181, 1093
DraI TTTAAA 2 cut(s) 114, 835
Eco130I CCWWGG 1 cut(s) 1081
Eco147I AGGCCT 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 416, 918
EcoT14I CCWWGG 1 cut(s) 1081
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 1 cut(s) 446
FalI AAGNNNNNCTT 4 cut(s) 370, 402, 972, 1004
FaqI GGGAC 1 cut(s) 911
FatI CATG 1 cut(s) 442
FauI CCCGC 1 cut(s) 916
FauNDI CATATG 1 cut(s) 806
Fnu4HI GCNGC 4 cut(s) 93, 102, 726, 876
FokI GGATG 3 cut(s) 41, 98, 804
Fsp4HI GCNGC 4 cut(s) 93, 102, 726, 876
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 998
GluI GCNGC 4 cut(s) 93, 102, 726, 876
HaeII RGCGCY 1 cut(s) 1000
HaeIII GGCC 2 cut(s) 913, 987
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 999
Hin1II CATG 1 cut(s) 446
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 119, 611, 885, 899, 1036, 1088
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 1045
Hpy188I TCNGA 4 cut(s) 229, 327, 583, 1093
Hpy188III TCNNGA 1 cut(s) 532
HpyAV CCTTC 5 cut(s) 371, 564, 959, 998, 1024
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 3 cut(s) 306, 492, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 101
HpyF3I CTNAG 2 cut(s) 96, 730
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 1 cut(s) 446
HspAI GCGC 1 cut(s) 997
Kzo9I GATC 2 cut(s) 181, 1093
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 4 cut(s) 79, 88, 712, 862
LweI GCATC 2 cut(s) 79, 720
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 3 cut(s) 128, 943, 1033
MalI GATC 2 cut(s) 183, 1095
MboI GATC 2 cut(s) 181, 1093
MboII GAAGA 8 cut(s) 417, 447, 641, 762, 774, 777, 780, 820
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 3 cut(s) 546, 931, 976
MluCI AATT 6 cut(s) 12, 307, 313, 654, 688, 1019
MlyI GAGTC 3 cut(s) 620, 893, 1030
MnlI CCTC 3 cut(s) 739, 825, 873
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 9 cut(s) 33, 48, 113, 282, 357, 375, 834, 858, 1061
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 418, 920
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 2 cut(s) 418, 920
MwoI GCNNNNNNNGC 2 cut(s) 98, 101
NdeI CATATG 1 cut(s) 806
NdeII GATC 2 cut(s) 181, 1093
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 4 cut(s) 255, 299, 543, 928
NmeAIII GCCGAG 1 cut(s) 701
NmuCI GTSAC 3 cut(s) 128, 943, 1033
PceI AGGCCT 1 cut(s) 913
PctI GAATGC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 119, 885, 1088
Pfl23II CGTACG 1 cut(s) 932
PflMI CCANNNNNTGG 1 cut(s) 1082
PkrI GCNGC 4 cut(s) 94, 103, 727, 877
PleI GAGTC 3 cut(s) 619, 893, 1030
PpsI GAGTC 3 cut(s) 619, 893, 1030
PpuMI RGGWCCY 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 1061
PsiI TTATAA 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 416, 918
PspGI CCWGG 2 cut(s) 416, 918
PspLI CGTACG 1 cut(s) 932
PspN4I GGNNCC 4 cut(s) 255, 299, 543, 928
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1093
RsaI GTAC 2 cut(s) 619, 934
RsaNI GTAC 2 cut(s) 618, 933
SaqAI TTAA 9 cut(s) 33, 48, 113, 282, 357, 375, 834, 858, 1061
SatI GCNGC 4 cut(s) 93, 102, 726, 876
Sau3AI GATC 2 cut(s) 181, 1093
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 3 cut(s) 620, 893, 1030
ScrFI CCNGG 2 cut(s) 418, 920
SduI GDGCHC 3 cut(s) 546, 931, 976
SetI ASST 9 cut(s) 357, 363, 481, 556, 817, 865, 950, 970, 1035
SfaNI GCATC 2 cut(s) 79, 720
SfcI CTRYAG 2 cut(s) 258, 745
SinI GGWCC 1 cut(s) 254
SmiI ATTTAAAT 1 cut(s) 114
Sse9I AATT 6 cut(s) 12, 307, 313, 654, 688, 1019
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 1 cut(s) 923
SspMI CTAG 1 cut(s) 522
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 2 cut(s) 416, 918
StyI CCWWGG 1 cut(s) 1081
SwaI ATTTAAAT 1 cut(s) 114
TaaI ACNGT 1 cut(s) 778
TaiI ACGT 1 cut(s) 950
TasI AATT 6 cut(s) 12, 307, 313, 654, 688, 1019
TfiI GAWTC 3 cut(s) 119, 885, 1088
Tru1I TTAA 9 cut(s) 33, 48, 113, 282, 357, 375, 834, 858, 1061
Tru9I TTAA 9 cut(s) 33, 48, 113, 282, 357, 375, 834, 858, 1061
TseFI GTSAC 3 cut(s) 128, 943, 1033
TseI GCWGC 4 cut(s) 92, 101, 725, 875
Tsp45I GTSAC 3 cut(s) 128, 943, 1033
TspDTI ATGAA 3 cut(s) 132, 667, 877
Van91I CCANNNNNTGG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 254
VspI ATTAAT 1 cut(s) 1061
XapI RAATTY 2 cut(s) 654, 1019
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.