Rmu_sc0000814.1_g000039

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000814.1
OG0000492
Physical Location & Seq
Forward (+)
124024 .. 126265
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000814.1_g000039.1.cds

Sequence Viewer

Length: 897 bp
atggagatcgaggtcgagctgactggatctggattgatggccgtactccatttcggggttctgttcgtgctgctgtgggtgtggctggtggtggaagaactgccggtggtggtgattcgtcttaatggatggccgctggcagaggtcgttcgactacgtggtttggcggggaagcttctctgctcgaaagcgtccggcatggctgggaagacgatgttgacgcgtctggtttgggcagaagagatcgggctttggacttgggctggactaggctgttttggaggaaggctcaaaacaagggataggctttccaggtttggaattattaatgataattcttgtcctctttgtaatcgagataatgagactcctgaccatttatttggttattgcgattttactgatgacgtttggaggctggcaaacattaacacctttgtggactgggaggaaggatatctcaaagtttttgaggaactattcttactacaaccttacagccctgacctgtttgcaaaaattattactttgtgctggcaggtttggaagactagaaataatgtgattttcagaacagctactgctaaacctatgtcaattgttatgacagttgaagcaataatgaaaagctttgctgattttaatactagtactagcagagcaaaaacttcaaacatttcaactacaattaagtggtctactcctcctagttcttttgttaaaatcaactttgatggttcagtttgtagagattcagctgctagtggttttgtcattagagaccatgatggaagaccagttatcgcttcaaccaagtatattggcaactctactatccctgtcgcaaaagctattgttctagggatagcctggttgcggccaaaaacaaaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

298

Amino Acids

33.37

Weight (kDa)

8.82

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 698
AccII CGCG 1 cut(s) 223
AciI CCGC 3 cut(s) 134, 167, 877
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 3 cut(s) 39, 131, 878
AfaI GTAC 2 cut(s) 45, 652
AfiI CCNNNNNNNGG 2 cut(s) 55, 876
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 4 cut(s) 614, 672, 681, 810
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 2 cut(s) 311, 869
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 6 cut(s) 19, 175, 578, 630, 758, 851
AluI AGCT 6 cut(s) 19, 175, 578, 630, 758, 851
Alw26I GTCTC 2 cut(s) 359, 774
AlwI GGATC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 3 cut(s) 39, 131, 878
ApeKI GCWGC 2 cut(s) 70, 758
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AseI ATTAAT 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 124
BbsI GAAGAC 3 cut(s) 215, 554, 799
BbvI GCAGC 2 cut(s) 57, 745
BccI CCATC 4 cut(s) 31, 123, 728, 782
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 313, 871
BcoDI GTCTC 2 cut(s) 359, 774
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 7 cut(s) 269, 552, 648, 654, 708, 762, 860
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 4 cut(s) 71, 134, 759, 878
BlsI GCNGC 4 cut(s) 72, 135, 760, 879
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 2 cut(s) 313, 871
BmrFI CCNGG 2 cut(s) 313, 871
BmrI ACTGGG 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 454
BpiI GAAGAC 3 cut(s) 215, 554, 799
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BsaAI YACGTR 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 774
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 876
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 3 cut(s) 28, 449, 797
BseBI CCWGG 2 cut(s) 313, 871
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 55, 876
BseNI ACTGG 3 cut(s) 28, 449, 797
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 2 cut(s) 57, 745
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 41, 133, 880
BsiSI CCGG 2 cut(s) 104, 195
BslI CCNNNNNNNGG 2 cut(s) 55, 876
BsmAI GTCTC 2 cut(s) 359, 774
BsnI GGCC 3 cut(s) 41, 133, 880
Bso31I GGTCTC 1 cut(s) 774
Bsp143I GATC 3 cut(s) 6, 26, 243
BspACI CCGC 3 cut(s) 134, 167, 877
BspANI GGCC 3 cut(s) 41, 133, 880
BspFNI CGCG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 3 cut(s) 28, 449, 797
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 3 cut(s) 6, 26, 243
Bst2UI CCWGG 2 cut(s) 313, 871
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 138, 420, 536
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 3 cut(s) 9, 29, 246
BstMAI GTCTC 2 cut(s) 359, 774
BstMBI GATC 3 cut(s) 6, 26, 243
BstNI CCWGG 2 cut(s) 313, 871
BstSCI CCNGG 2 cut(s) 311, 869
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 57, 745
BstV2I GAAGAC 3 cut(s) 215, 554, 799
BstX2I RGATCY 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 41, 133, 880
BtsCI GGATG 1 cut(s) 134
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 138, 420, 536
CaiI CAGNNNCTG 1 cut(s) 581
Cfr10I RCCGGY 1 cut(s) 103
CseI GACGC 3 cut(s) 180, 212, 229
Csp6I GTAC 2 cut(s) 44, 651
CviAII CATG 2 cut(s) 199, 785
CviQI GTAC 2 cut(s) 44, 651
DpnI GATC 3 cut(s) 8, 28, 245
DpnII GATC 3 cut(s) 6, 26, 243
EaeI YGGCCR 3 cut(s) 39, 131, 878
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 774
Eco32I GATATC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 311, 869
EcoRV GATATC 1 cut(s) 458
FaeI CATG 2 cut(s) 202, 788
FaiI YATR 5 cut(s) 200, 593, 605, 786, 819
FatI CATG 2 cut(s) 198, 784
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 1 cut(s) 698
Fnu4HI GCNGC 4 cut(s) 71, 134, 759, 878
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 4 cut(s) 71, 134, 759, 878
FspBI CTAG 7 cut(s) 269, 552, 648, 654, 708, 762, 860
GluI GCNGC 4 cut(s) 71, 134, 759, 878
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 3 cut(s) 41, 133, 880
HapII CCGG 2 cut(s) 104, 195
HgaI GACGC 3 cut(s) 180, 212, 229
Hin1II CATG 2 cut(s) 202, 788
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 2 cut(s) 173, 628
HinfI GANTC 3 cut(s) 115, 367, 752
HpaII CCGG 2 cut(s) 104, 195
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 219, 442, 699
Hpy188I TCNGA 1 cut(s) 572
Hpy188III TCNNGA 3 cut(s) 30, 356, 371
Hpy8I GTNNAC 3 cut(s) 219, 442, 699
HpyAV CCTTC 2 cut(s) 279, 446
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 2 cut(s) 157, 408
HpyCH4V TGCA 1 cut(s) 515
HpySE526I ACGT 2 cut(s) 157, 408
Hsp92II CATG 2 cut(s) 202, 788
Kzo9I GATC 3 cut(s) 6, 26, 243
Lsp1109I GCAGC 2 cut(s) 57, 745
MaeI CTAG 7 cut(s) 269, 552, 648, 654, 708, 762, 860
MaeII ACGT 2 cut(s) 157, 408
MalI GATC 3 cut(s) 8, 28, 245
MboI GATC 3 cut(s) 6, 26, 243
MboII GAAGA 5 cut(s) 107, 220, 251, 559, 804
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 26
MluCI AATT 5 cut(s) 321, 334, 519, 597, 687
MluI ACGCGT 1 cut(s) 221
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 8 cut(s) 4, 136, 275, 354, 408, 442, 466, 714
MseI TTAA 6 cut(s) 123, 327, 429, 642, 690, 720
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 136, 758
MspI CCGG 2 cut(s) 104, 195
MspR9I CCNGG 2 cut(s) 313, 871
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 2 cut(s) 313, 871
MvnI CGCG 1 cut(s) 223
NdeII GATC 3 cut(s) 6, 26, 243
NlaIII CATG 2 cut(s) 202, 788
OliI CACNNNNGTG 1 cut(s) 437
PfeI GAWTC 2 cut(s) 115, 752
PkrI GCNGC 4 cut(s) 72, 135, 760, 879
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 311, 869
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 2 cut(s) 311, 869
PsrI GAACNNNNNNTAC 2 cut(s) 468, 500
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 45, 652
RsaNI GTAC 2 cut(s) 44, 651
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 6 cut(s) 123, 327, 429, 642, 690, 720
SatI GCNGC 4 cut(s) 71, 134, 759, 878
Sau3AI GATC 3 cut(s) 6, 26, 243
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 313, 871
SmiMI CAYNNNNRTG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 5 cut(s) 321, 334, 519, 597, 687
SsiI CCGC 3 cut(s) 134, 167, 877
SspMI CTAG 7 cut(s) 269, 552, 648, 654, 708, 762, 860
StyD4I CCNGG 2 cut(s) 311, 869
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 2 cut(s) 160, 411
TaqI TCGA 5 cut(s) 9, 15, 151, 185, 355
TasI AATT 5 cut(s) 321, 334, 519, 597, 687
TatI WGTACW 1 cut(s) 650
TauI GCSGC 2 cut(s) 136, 880
TfiI GAWTC 2 cut(s) 115, 752
Tru1I TTAA 6 cut(s) 123, 327, 429, 642, 690, 720
Tru9I TTAA 6 cut(s) 123, 327, 429, 642, 690, 720
TseI GCWGC 2 cut(s) 70, 758
TspDTI ATGAA 1 cut(s) 638
VspI ATTAAT 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 698
XspI CTAG 7 cut(s) 269, 552, 648, 654, 708, 762, 860
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.