FvH4_6g24331

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000492
Physical Location & Seq
Reverse (-)
18435509 .. 18436260
752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24331.t1

Sequence Viewer

Length: 669 bp
ATGTCGTGTTTTAAATGTCCTGCAAAAATTACAAAGGCTATTGACAAAAAATTCAGAAATTTCTTTTGGGGCTCTCAAAGCAAAGCTTATGCTGTGGCTTGGGATCTAGCTTATACACCCAAGAACAAGGGCAGCCTTGGGTTAAGATCTTCGGGTCATTTTAATAATGTTGCGATAGCAAAACTTGGATGGAAAATTCTTCCTCATAATGACAATTGGTGGGTTTTGATTGTCTCGAGAAAGTACCTTAGGAATTCCTCTTTTTTCCAAGCTAGAAAGAAGGCCTCTTCCTCCTTAGCATGGAAAGACATTCTTGACTCTAGGAATCTCATTCATGAAGGAATGAGATGGATTCATGATACCATTAACTTGAATGACATTGTTGGAGATTACATTATTGGAAATAATAACAAGCAGAAGCTTCAAATCTTGTTTGATGCAGATATTGTGGATCAAATTTGTGGAATTCCCATTCCGGATACTCCTCAGAATGATTCTTTTGTTTGGGGTCTTTCTCCAAATGGAAGTTTTACAATTAAGTCTGCTACTTGGATGCAAAATGCAAAGGCTCAACCTCATGAACAATCTCCTCTATCAAAAAGCTGTGGAAGCTTAATGTGCCACCCAAAGTTAAAATCTTTGGTTGGCTCCTGTTACATGGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

9.51

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 475
AclWI GGATC 2 cut(s) 111, 459
AcsI RAATTY 6 cut(s) 50, 58, 195, 253, 456, 465
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 373, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 6 cut(s) 86, 110, 272, 421, 603, 612
AluI AGCT 6 cut(s) 86, 110, 272, 421, 603, 612
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 2 cut(s) 111, 459
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 6 cut(s) 50, 58, 195, 253, 456, 465
AvaI CYCGRG 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 248
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 183, 342
BciVI GTATCC 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 3 cut(s) 107, 273, 321
BfuI GTATCC 1 cut(s) 472
BglII AGATCT 1 cut(s) 146
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 649
BmsI GCATC 2 cut(s) 427, 543
Bpu10I CCTNAGC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse21I CCTNAGG 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 475
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 194, 558
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 500
BseRI GAGGAG 2 cut(s) 474, 579
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 3 cut(s) 103, 146, 451
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 499
BspEI TCCGGA 1 cut(s) 475
BspHI TCATGA 3 cut(s) 334, 355, 577
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 2 cut(s) 111, 459
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 103, 146, 451
BssT1I CCWWGG 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 248, 295, 486
BstF5I GGATG 2 cut(s) 194, 558
BstKTI GATC 3 cut(s) 106, 149, 454
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 3 cut(s) 103, 146, 451
BstMWI GCNNNNNNNGC 3 cut(s) 78, 609, 618
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 103, 146
BstYI RGATCY 2 cut(s) 103, 146
Bsu36I CCTNAGG 1 cut(s) 248
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 194, 558
CciI TCATGA 3 cut(s) 334, 355, 577
Csp6I GTAC 1 cut(s) 244
CviAII CATG 5 cut(s) 300, 335, 356, 578, 658
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 248, 295, 486
DpnI GATC 3 cut(s) 105, 148, 453
DpnII GATC 3 cut(s) 103, 146, 451
DraI TTTAAA 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 74
Eco81I CCTNAGG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 253, 465
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 5 cut(s) 303, 338, 359, 581, 661
FaiI YATR 8 cut(s) 90, 114, 207, 301, 336, 357, 579, 659
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 297, 329
FatI CATG 5 cut(s) 299, 334, 355, 577, 657
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 201, 565
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 3 cut(s) 107, 273, 321
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 476
Hin1II CATG 5 cut(s) 303, 338, 359, 581, 661
HindIII AAGCTT 3 cut(s) 84, 419, 610
HinfI GANTC 4 cut(s) 317, 325, 352, 494
HpaII CCGG 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 56, 489
Hpy188III TCNNGA 7 cut(s) 235, 237, 314, 335, 356, 476, 578
HpyAV CCTTC 3 cut(s) 274, 332, 656
HpyCH4V TGCA 4 cut(s) 23, 440, 556, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 609, 618
HpyF3I CTNAG 3 cut(s) 248, 295, 486
Hsp92II CATG 5 cut(s) 303, 338, 359, 581, 661
Kpn2I TCCGGA 1 cut(s) 475
Kzo9I GATC 3 cut(s) 103, 146, 451
LmnI GCTCC 1 cut(s) 653
LpnPI CCDG 3 cut(s) 33, 489, 664
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 427, 543
MaeI CTAG 3 cut(s) 107, 273, 321
MaeIII GTNAC 1 cut(s) 653
MalI GATC 3 cut(s) 105, 148, 453
MboI GATC 3 cut(s) 103, 146, 451
MboII GAAGA 3 cut(s) 141, 191, 279
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 2 cut(s) 103, 146
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 9 cut(s) 27, 50, 58, 195, 214, 253, 456, 465, 534
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 7 cut(s) 213, 268, 295, 301, 495, 585, 600
MroI TCCGGA 1 cut(s) 475
MseI TTAA 7 cut(s) 12, 143, 162, 366, 537, 614, 632
MspI CCGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 78, 609, 618
NdeII GATC 3 cut(s) 103, 146, 451
NlaIII CATG 5 cut(s) 303, 338, 359, 581, 661
NlaIV GGNNCC 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 3 cut(s) 334, 355, 577
PceI AGGCCT 1 cut(s) 284
PfeI GAWTC 3 cut(s) 325, 352, 494
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 649
PsuI RGATCY 2 cut(s) 103, 146
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 7 cut(s) 12, 143, 162, 366, 537, 614, 632
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 3 cut(s) 103, 146, 451
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 74
SetI ASST 8 cut(s) 88, 112, 249, 274, 423, 577, 605, 614
SfaNI GCATC 2 cut(s) 427, 543
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 9 cut(s) 27, 50, 58, 195, 214, 253, 456, 465, 534
SseBI AGGCCT 1 cut(s) 284
SspMI CTAG 3 cut(s) 107, 273, 321
StuI AGGCCT 1 cut(s) 284
StyI CCWWGG 1 cut(s) 136
TaqI TCGA 1 cut(s) 236
TasI AATT 9 cut(s) 27, 50, 58, 195, 214, 253, 456, 465, 534
TfiI GAWTC 3 cut(s) 325, 352, 494
Tru1I TTAA 7 cut(s) 12, 143, 162, 366, 537, 614, 632
Tru9I TTAA 7 cut(s) 12, 143, 162, 366, 537, 614, 632
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 4 cut(s) 323, 344, 351, 594
XapI RAATTY 6 cut(s) 50, 58, 195, 253, 456, 465
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 3 cut(s) 107, 273, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.