FvH4_4g00611

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000492
Physical Location & Seq
Reverse (-)
528384 .. 533913
5530 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00611.t1

Sequence Viewer

Length: 2157 bp
ATGATGTTCCCTAACTCGATTTACCTGAAGAATAAAGTTTTGGAGACTAATAGAGAATTAATGAACTTCTATCAGAAAGAAGAAATTTACTGGGCCCAAAGAGCCAAAGAAAATTGGCTCTCCTTAGGTGATAAGTATACAAAGTACTTTCATACTCATGCTACAATCAGAAAACATAAAAATAAGATAGTTGGTATTAAAAACGATTTGGACATGTGGATTACTGATTATGATGACATTGCCAGTGTTTTTGTACAGAGTTTTAAGAATCGTTTTTCTTCTACTGGAAATCAAGCTGGAAACAGGGATTTCTCCTTTTGTGACATTATAAATGGAGGAATTTCTGATATTGACAATGACCTCATTCTAGCCCCCGCTACTATGCTGGAAGTAGAAAAGGCAGTGAACTCTATTGGAAGCCTGAAGGCTCCAGGCCCTGATGGTCTAAATGCCTTGTTTTTTCTGAAAAACTGGGAAAGCCTCAAAGGAAGTATCTTCTCCTTAGTTACCAATTTCTTTGATAATAAAACTGATTGCTTAAAGATGATAAACCATACTAATATAGCTTTGATTCCTAAAATAGAAAAACCGGAGACAGTTAACCATTTTAGACCTATTAGTTTATGCAATGTTGTGTATAAGATTATTTCTAAAATATTGGTTGCGAGGCTCAAACCTTTGCTGGTTAAGTGTATCTCTCAGAATCAGGGAGCTTTTGCTCCTGGTAGATCAATTGTTGACAACATTCTGATTGCTCATGAATTATTCTCGAATTTTAATAGAATGAAAGCCAATTCTGGTGCAATGGCAGTGAAGTTAGATTTAGAAAAAGCCTATGATTTTGTTGATTGGAACTATATTAGAGTTATTCTGACCAGATTTGGGTTTAGACAGAGTTGGATTGATTTAGTTATGAGCTGTATCACTTCTGTCTCTTTTTCTATTCTTGTGAATGGTAAGCCTTCTGGTCACTTTTCCCCCTCTCGGGGATTAAGACAAGGGGATCCTTTATCTCCTTACATTTTTATTTTATGTATGGAACCTCTGATTAGACATTTGAACTTGGCCACTGATAAACCTAAGAATCATGTTGGTATTCTTTCCTCCCCAAAAGGGTTTAGAATTTCTAATCTTCTTTTTGCTGATGATTGTTTAATATTTGGCAGGGCATCTTCCACAGCTGCTCGTAATATTGATAACATCCTCAGGAAGTATGCTGCCTCCTCTGGTCAACAAATCAATCTAGATAAGTCTTCCATTTACTTTTCCAATAAGACACAGGCTTCTTTGAACGTGAACATTTCAAATTTACTTGGCATTAAGCATAAAACGACCATTGGTAGATATCTTGGTATTCACAATATTGTCTTTTGGAAAGACCCTCAAAATGCTAGAGAACTGCTCATTAAGATTTCTAAAAGGCTTAGTGGCTGGAAAAGCTTGACGCTTTCTAGAGCTGGCAAGGCCATTTTACTTAAGTCTAATGCCTCTGCTATTCCTAATCATGTTCTCTCTTGCTTTAAGTGCCCTTCTAAGATTGCTAAGGCTATGGAAAAAGATATGAGATCTTTTTTCTGGGGGAAAGATGCTAAGGTCCCTCCAGTAGCTTGGGATCAGGTTTGCCTCCCTAAAGATTGGGGGGGCCTTGGTTTAAGACTAATTTCTTTTTACAATAATGCTGCCTTAGCCAAACTTGGCTGGAAGGTTCTGACCAATAAAGAAAACTGGTGGACAAAAATTGTCACCCAGAAGTATTTAAGAAAGCATTCCTTTTTTGATCTAAAAAAGAAAGCCAACCATTCTTACGCTTGGAAAGGAATTTTAGACGTTAGAGACATTATTATCTCTGGTATGAGGTGGATCCTTGGGAATGGTAAGAATATTAAGTTTTGGACTTTTAACTGGGTCTACGATTTTCCCTTGATTAATCTCTTAGATGATTCTGTCAAAGACATGATTGATGTTGATGTTGATGCTACAGTGGCTGATTTTATTGAGAATGGTTGCTGGAACATCCCCAAATTGGTTTCTTGTCTTGATAGACCTACTGCGCTGCTGTTTGGGCAAACTGCAGTAATTTGCCGTCTCCTGCAGCTCACCATTCTGTGGGAGATTGGTTGGACTTTTTATTTAAGAATGCTTCAAGTACTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

719

Amino Acids

81.72

Weight (kDa)

9.57

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 194 - 452 8.5e-35 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 2106
AccI GTMKAC 2 cut(s) 137, 1908
AciI CCGC 1 cut(s) 375
AclWI GGATC 5 cut(s) 998, 1011, 1620, 1855, 1868
AcoI YGGCCR 1 cut(s) 1065
AcsI RAATTY 6 cut(s) 84, 339, 772, 1122, 1306, 1818
AcuI CTGAAG 2 cut(s) 47, 443
AfaI GTAC 3 cut(s) 146, 255, 2148
AfiI CCNNNNNNNGG 7 cut(s) 882, 984, 985, 986, 1113, 2023, 2106
AflII CTTAAG 1 cut(s) 1475
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 4 cut(s) 1060, 1291, 1305, 2144
AjnI CCWGG 2 cut(s) 430, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 9 cut(s) 296, 566, 713, 918, 1181, 1440, 1457, 1607, 2095
AluI AGCT 9 cut(s) 296, 566, 713, 918, 1181, 1440, 1457, 1607, 2095
Alw26I GTCTC 5 cut(s) 38, 587, 937, 1827, 2090
AlwI GGATC 5 cut(s) 998, 1011, 1620, 1855, 1868
AlwNI CAGNNNCTG 2 cut(s) 437, 1985
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 5 cut(s) 93, 433, 1065, 1464, 1642
ApaI GGGCCC 1 cut(s) 97
ApeKI GCWGC 5 cut(s) 1181, 1217, 1679, 2053, 2092
ApoI RAATTY 6 cut(s) 84, 339, 772, 1122, 1306, 1818
AseI ATTAAT 2 cut(s) 59, 1926
Asp700I GAANNNNTTC 1 cut(s) 1765
AspLEI GCGC 1 cut(s) 2053
AspS9I GGNCC 5 cut(s) 93, 94, 434, 1594, 1642
AsuHPI GGTGA 3 cut(s) 140, 1735, 2089
AvaI CYCGRG 1 cut(s) 984
AvaII GGWCC 1 cut(s) 1594
AxyI CCTNAGG 2 cut(s) 124, 1205
BaeGI GKGCMC 2 cut(s) 97, 1529
BalI TGGCCA 1 cut(s) 1067
BamHI GGATCC 2 cut(s) 1003, 1860
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 1245
BbvI GCAGC 5 cut(s) 1168, 1204, 1666, 2040, 2104
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 2067
BciT130I CCWGG 2 cut(s) 432, 723
BcoDI GTCTC 5 cut(s) 38, 587, 937, 1827, 2090
BfaI CTAG 4 cut(s) 368, 1244, 1392, 1452
BfmI CTRYAG 3 cut(s) 1977, 2070, 2090
BfrI CTTAAG 1 cut(s) 1475
BglII AGATCT 1 cut(s) 1565
BisI GCNGC 5 cut(s) 1182, 1218, 1680, 2054, 2093
BlsI GCNGC 5 cut(s) 1183, 1219, 1681, 2055, 2094
BmcAI AGTACT 2 cut(s) 146, 2148
Bme1390I CCNGG 2 cut(s) 432, 723
Bme18I GGWCC 1 cut(s) 1594
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 5 cut(s) 93, 94, 434, 1594, 1642
BmiI GGNNCC 7 cut(s) 95, 429, 1005, 1041, 1596, 1643, 1862
BmrFI CCNGG 2 cut(s) 432, 723
BmrI ACTGGG 3 cut(s) 100, 481, 1912
BmsI GCATC 3 cut(s) 1178, 1576, 1963
BmuI ACTGGG 3 cut(s) 100, 481, 1912
BpiI GAAGAC 1 cut(s) 1245
BplI GAGNNNNNCTC 2 cut(s) 1386, 1418
BpmI CTGGAG 2 cut(s) 414, 1584
Bpu10I CCTNAGC 3 cut(s) 1542, 1590, 1684
BsaJI CCNNGG 2 cut(s) 1645, 1864
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 7 cut(s) 882, 984, 985, 986, 1113, 2023, 2106
Bse1I ACTGG 7 cut(s) 95, 243, 289, 476, 1601, 1730, 1907
Bse21I CCTNAGG 2 cut(s) 124, 1205
Bse3DI GCAATG 3 cut(s) 237, 634, 810
BseBI CCWGG 2 cut(s) 432, 723
BseDI CCNNGG 2 cut(s) 1645, 1864
BseGI GGATG 2 cut(s) 1200, 2013
BseLI CCNNNNNNNGG 7 cut(s) 882, 984, 985, 986, 1113, 2023, 2106
BseMI GCAATG 3 cut(s) 237, 634, 810
BseMII CTCAG 2 cut(s) 713, 1219
BseNI ACTGG 7 cut(s) 95, 243, 289, 476, 1601, 1730, 1907
BseRI GAGGAG 1 cut(s) 1213
BseSI GKGCMC 2 cut(s) 97, 1529
BseXI GCAGC 5 cut(s) 1168, 1204, 1666, 2040, 2104
BshFI GGCC 5 cut(s) 95, 435, 1067, 1466, 1644
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 1580
BslI CCNNNNNNNGG 7 cut(s) 882, 984, 985, 986, 1113, 2023, 2106
BsmAI GTCTC 5 cut(s) 38, 587, 937, 1827, 2090
BsmBI CGTCTC 1 cut(s) 2090
BsmFI GGGAC 1 cut(s) 1580
BsmI GAATGC 2 cut(s) 1765, 2142
BsnI GGCC 5 cut(s) 95, 435, 1067, 1466, 1644
BsoBI CYCGRG 1 cut(s) 984
Bsp120I GGGCCC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 97, 1529
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
BspACI CCGC 1 cut(s) 375
BspANI GGCC 5 cut(s) 95, 435, 1067, 1466, 1644
BspCNI CTCAG 2 cut(s) 712, 1218
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 7 cut(s) 95, 429, 1005, 1041, 1596, 1643, 1862
BspMAI CTGCAG 2 cut(s) 2074, 2094
BspPI GGATC 5 cut(s) 998, 1011, 1620, 1855, 1868
BspTI CTTAAG 1 cut(s) 1475
BsrDI GCAATG 3 cut(s) 237, 634, 810
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 7 cut(s) 95, 243, 289, 476, 1601, 1730, 1907
BssECI CCNNGG 2 cut(s) 1645, 1864
BssMI GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
BssNAI GTATAC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 1645, 1864
Bst1107I GTATAC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 432, 723
Bst4CI ACNGT 2 cut(s) 598, 1981
BstAFI CTTAAG 1 cut(s) 1475
BstAUI TGTACA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 1459
BstF5I GGATG 2 cut(s) 1200, 2013
BstHHI GCGC 1 cut(s) 2053
BstKTI GATC 6 cut(s) 731, 1006, 1568, 1615, 1780, 1863
BstMAI GTCTC 5 cut(s) 38, 587, 937, 1827, 2090
BstMBI GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
BstMWI GCNNNNNNNGC 7 cut(s) 101, 1437, 1463, 1524, 1685, 1982, 2062
BstNI CCWGG 2 cut(s) 432, 723
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 430, 721
BstSFI CTRYAG 3 cut(s) 1977, 2070, 2090
BstSLI GKGCMC 2 cut(s) 97, 1529
BstV1I GCAGC 5 cut(s) 1168, 1204, 1666, 2040, 2104
BstV2I GAAGAC 1 cut(s) 1245
BstX2I RGATCY 3 cut(s) 1003, 1565, 1860
BstXI CCANNNNNNTGG 1 cut(s) 1608
BstYI RGATCY 3 cut(s) 1003, 1565, 1860
BstZ17I GTATAC 1 cut(s) 138
Bsu36I CCTNAGG 2 cut(s) 124, 1205
BsuRI GGCC 5 cut(s) 95, 435, 1067, 1466, 1644
BtsCI GGATG 2 cut(s) 1200, 2013
BtsI GCAGTG 2 cut(s) 408, 816
BtsIMutI CAGTG 5 cut(s) 250, 408, 816, 1068, 1986
Cac8I GCNNGC 1 cut(s) 1459
CaiI CAGNNNCTG 2 cut(s) 437, 1985
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 2053
Cfr13I GGNCC 5 cut(s) 93, 94, 434, 1594, 1642
CseI GACGC 1 cut(s) 1453
Csp6I GTAC 3 cut(s) 145, 254, 2147
CviAII CATG 6 cut(s) 158, 214, 758, 1088, 1505, 1954
CviQI GTAC 3 cut(s) 145, 254, 2147
DpnI GATC 6 cut(s) 730, 1005, 1567, 1614, 1779, 1862
DpnII GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
EaeI YGGCCR 1 cut(s) 1065
Eco130I CCWWGG 2 cut(s) 1645, 1864
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 1346
Eco47I GGWCC 1 cut(s) 1594
Eco57I CTGAAG 2 cut(s) 47, 443
Eco81I CCTNAGG 2 cut(s) 124, 1205
Eco88I CYCGRG 1 cut(s) 984
EcoO109I RGGNCCY 3 cut(s) 434, 1594, 1642
EcoRII CCWGG 2 cut(s) 430, 721
EcoRV GATATC 1 cut(s) 1346
EcoT14I CCWWGG 2 cut(s) 1645, 1864
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 2 cut(s) 1645, 1864
Esp3I CGTCTC 1 cut(s) 2090
FaeI CATG 6 cut(s) 161, 217, 761, 1091, 1508, 1957
FalI AAGNNNNNCTT 2 cut(s) 1754, 1786
FaqI GGGAC 1 cut(s) 1580
FatI CATG 6 cut(s) 157, 213, 757, 1087, 1504, 1953
FauI CCCGC 1 cut(s) 382
FblI GTMKAC 2 cut(s) 137, 1908
Fnu4HI GCNGC 5 cut(s) 1182, 1218, 1680, 2054, 2093
FokI GGATG 2 cut(s) 1187, 2000
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 5 cut(s) 1182, 1218, 1680, 2054, 2093
FspBI CTAG 4 cut(s) 368, 1244, 1392, 1452
GlaI GCGC 1 cut(s) 2052
GluI GCNGC 5 cut(s) 1182, 1218, 1680, 2054, 2093
GsuI CTGGAG 2 cut(s) 414, 1584
HaeIII GGCC 5 cut(s) 95, 435, 1067, 1466, 1644
HapII CCGG 1 cut(s) 590
HgaI GACGC 1 cut(s) 1453
HhaI GCGC 1 cut(s) 2053
Hin1II CATG 6 cut(s) 161, 217, 761, 1091, 1508, 1957
Hin6I GCGC 1 cut(s) 2051
HinP1I GCGC 1 cut(s) 2051
HincII GTYRAC 3 cut(s) 601, 739, 1232
HindII GTYRAC 3 cut(s) 601, 739, 1232
HindIII AAGCTT 1 cut(s) 1438
HinfI GANTC 5 cut(s) 268, 571, 703, 1084, 1940
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 1 cut(s) 590
HphI GGTGA 3 cut(s) 140, 1735, 2089
Hpy166II GTNNAC 8 cut(s) 138, 406, 601, 739, 1232, 1297, 1731, 1909
Hpy188I TCNGA 9 cut(s) 75, 170, 346, 465, 702, 750, 873, 1047, 1710
Hpy188III TCNNGA 6 cut(s) 758, 769, 1207, 1244, 1452, 2036
Hpy8I GTNNAC 8 cut(s) 138, 406, 601, 739, 1232, 1297, 1731, 1909
HpyAV CCTTC 4 cut(s) 418, 972, 1539, 1696
HpyCH4III ACNGT 2 cut(s) 598, 1981
HpyCH4IV ACGT 2 cut(s) 1293, 1827
HpyCH4V TGCA 4 cut(s) 627, 803, 2072, 2092
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 1437, 1463, 1524, 1685, 1982, 2062
HpySE526I ACGT 2 cut(s) 1293, 1827
Hsp92II CATG 6 cut(s) 161, 217, 761, 1091, 1508, 1957
HspAI GCGC 1 cut(s) 2051
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
LmnI GCTCC 3 cut(s) 433, 710, 724
Lsp1109I GCAGC 5 cut(s) 1168, 1204, 1666, 2040, 2104
LweI GCATC 3 cut(s) 1178, 1576, 1963
MaeI CTAG 4 cut(s) 368, 1244, 1392, 1452
MaeII ACGT 2 cut(s) 1293, 1827
MaeIII GTNAC 4 cut(s) 320, 505, 968, 1741
MalI GATC 6 cut(s) 730, 1005, 1567, 1614, 1779, 1862
MboI GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
MboII GAAGA 7 cut(s) 40, 92, 270, 487, 1124, 1164, 1245
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 3 cut(s) 1003, 1565, 1860
MhlI GDGCHC 2 cut(s) 97, 1529
MlsI TGGCCA 1 cut(s) 1067
MluNI TGGCCA 1 cut(s) 1067
MmeI TCCRAC 2 cut(s) 878, 2099
Mox20I TGGCCA 1 cut(s) 1067
MroXI GAANNNNTTC 1 cut(s) 1765
MscI TGGCCA 1 cut(s) 1067
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 1067
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 1475
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 432, 723
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 2 cut(s) 1765, 2142
MvaI CCWGG 2 cut(s) 432, 723
MwoI GCNNNNNNNGC 7 cut(s) 101, 1437, 1463, 1524, 1685, 1982, 2062
NdeII GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
NlaIII CATG 6 cut(s) 161, 217, 761, 1091, 1508, 1957
NlaIV GGNNCC 7 cut(s) 95, 429, 1005, 1041, 1596, 1643, 1862
NmuCI GTSAC 3 cut(s) 320, 968, 1741
NspI RCATGY 1 cut(s) 217
PagI TCATGA 1 cut(s) 757
PciI ACATGT 1 cut(s) 213
PctI GAATGC 2 cut(s) 1765, 2142
PdmI GAANNNNTTC 1 cut(s) 1765
PfeI GAWTC 5 cut(s) 268, 571, 703, 1084, 1940
PflMI CCANNNNNTGG 1 cut(s) 2106
PkrI GCNGC 5 cut(s) 1183, 1219, 1681, 2055, 2094
PpuMI RGGWCCY 1 cut(s) 1594
PscI ACATGT 1 cut(s) 213
PshBI ATTAAT 2 cut(s) 59, 1926
PsiI TTATAA 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 1594
Psp6I CCWGG 2 cut(s) 430, 721
PspGI CCWGG 2 cut(s) 430, 721
PspN4I GGNNCC 7 cut(s) 95, 429, 1005, 1041, 1596, 1643, 1862
PspOMI GGGCCC 1 cut(s) 93
PspPI GGNCC 5 cut(s) 93, 94, 434, 1594, 1642
PspPPI RGGWCCY 1 cut(s) 1594
PstI CTGCAG 2 cut(s) 2074, 2094
PstNI CAGNNNCTG 2 cut(s) 437, 1985
PsuI RGATCY 3 cut(s) 1003, 1565, 1860
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 3 cut(s) 146, 255, 2148
RsaNI GTAC 3 cut(s) 145, 254, 2147
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 5 cut(s) 1182, 1218, 1680, 2054, 2093
Sau3AI GATC 6 cut(s) 728, 1003, 1565, 1612, 1777, 1860
Sau96I GGNCC 5 cut(s) 93, 94, 434, 1594, 1642
ScaI AGTACT 2 cut(s) 146, 2148
ScrFI CCNGG 2 cut(s) 432, 723
SduI GDGCHC 2 cut(s) 97, 1529
SfaNI GCATC 3 cut(s) 1178, 1576, 1963
SfcI CTRYAG 3 cut(s) 1977, 2070, 2090
SinI GGWCC 1 cut(s) 1594
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 1475
SmoI CTYRAG 1 cut(s) 1475
SsiI CCGC 1 cut(s) 375
SspI AATATT 5 cut(s) 657, 1158, 1192, 1363, 1882
SspMI CTAG 4 cut(s) 368, 1244, 1392, 1452
StyD4I CCNGG 2 cut(s) 430, 721
StyI CCWWGG 2 cut(s) 1645, 1864
TaaI ACNGT 2 cut(s) 598, 1981
TaiI ACGT 2 cut(s) 1296, 1830
TaqI TCGA 2 cut(s) 17, 770
TatI WGTACW 3 cut(s) 144, 253, 2146
TfiI GAWTC 5 cut(s) 268, 571, 703, 1084, 1940
TscAI CASTG 5 cut(s) 250, 408, 816, 1075, 1986
TseFI GTSAC 3 cut(s) 320, 968, 1741
TseI GCWGC 5 cut(s) 1181, 1217, 1679, 2053, 2092
Tsp45I GTSAC 3 cut(s) 320, 968, 1741
TspDTI ATGAA 4 cut(s) 77, 140, 774, 800
TspRI CASTG 5 cut(s) 250, 408, 816, 1075, 1986
Van91I CCANNNNNTGG 1 cut(s) 2106
Vha464I CTTAAG 1 cut(s) 1475
VpaK11BI GGWCC 1 cut(s) 1594
VspI ATTAAT 2 cut(s) 59, 1926
XapI RAATTY 6 cut(s) 84, 339, 772, 1122, 1306, 1818
XbaI TCTAGA 2 cut(s) 1243, 1451
XceI RCATGY 1 cut(s) 217
XmiI GTMKAC 2 cut(s) 137, 1908
XmnI GAANNNNTTC 1 cut(s) 1765
XspI CTAG 4 cut(s) 368, 1244, 1392, 1452
ZrmI AGTACT 2 cut(s) 146, 2148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.