Rmu_sc0000558.1_g000007

Glycosyltransferase like family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000558.1
OG0000492
Physical Location & Seq
Reverse (-)
35553 .. 39949
4397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000558.1_g000007.1.cds

Sequence Viewer

Length: 885 bp
atggggtccagtgatggcgtggttgctgacgtagctgctaacgtggaggagcttgtgacaaaatttggtggaaattggaggtccggaagatggtggaccggtggaatatttgctgctagttgtatggagtttctgatgtccggttcggtgggtttccggccggttcttagggtgggcagcctgttctggactcctgggatcgagttcttcaatgtccgaggtccggctcactttacctcagtcaaggcccggctcacttcacctcagccaaggtccggctcacctgagtctaggtatggtttacttgtggttgagatagtcctagccaatgcccgtttcagtttggaagacaacaaccacattttccactcctgttcttttacacgcagaatttggagtatggttcccaatattccttccccagcaagtttcgctaatctctcagattgggtcctccacctatttgacaaggaatcagctaccactattgaagactgtattttattatgttggcagatttggggggcaagaaacaacttaattttcaacaattctcttgcttccccaaataacatcactctttttgctgcctccgttgggtccaactatagaagaaacaatcagagagcttcaaagacaggatctgtgtcagccggtactatcacttggaaaccccctccagctggtctctttaaactcaactttgatggatcagtgaaaggtaattacagtgctgctgcgggcttcatcatcagggattctaatgggaggcctatcctagctggtacccgtaagatttgtgtcacttcagtatctactgctaagggttgtgctcttaaagatggtctcatccaggctctttgtcaaaacatcaaaagaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

31.97

Weight (kDa)

9.74

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 785
AccIII TCCGGA 1 cut(s) 83
AciI CCGC 1 cut(s) 740
AclWI GGATC 3 cut(s) 206, 649, 718
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 3 cut(s) 62, 390, 879
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 2 cut(s) 658, 787
AfiI CCNNNNNNNGG 5 cut(s) 90, 223, 275, 597, 683
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 4 cut(s) 211, 491, 547, 633
AjnI CCWGG 2 cut(s) 193, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 6 cut(s) 35, 52, 479, 629, 683, 782
AluI AGCT 6 cut(s) 35, 52, 479, 629, 683, 782
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 2 cut(s) 692, 851
AlwI GGATC 3 cut(s) 206, 649, 718
AlwNI CAGNNNCTG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 83
AoxI GGCC 3 cut(s) 158, 246, 770
ApeKI GCWGC 6 cut(s) 35, 113, 177, 587, 734, 737
ApoI RAATTY 3 cut(s) 62, 390, 879
AsiGI ACCGGT 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 785
AspS9I GGNCC 8 cut(s) 6, 81, 96, 221, 247, 273, 451, 600
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 252, 273
AvaII GGWCC 7 cut(s) 6, 81, 96, 221, 273, 451, 600
BaeI ACNNNNGTAYC 2 cut(s) 795, 828
BanI GGYRCC 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 354, 498
Bbv12I GWGCWC 1 cut(s) 835
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 22, 100, 189, 574, 721, 724
BccI CCATC 4 cut(s) 8, 84, 701, 836
BciT130I CCWGG 2 cut(s) 195, 854
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 692, 851
BfaI CTAG 4 cut(s) 117, 291, 323, 779
BfmI CTRYAG 1 cut(s) 607
BisI GCNGC 6 cut(s) 36, 114, 178, 588, 735, 738
BlsI GCNGC 6 cut(s) 37, 115, 179, 589, 736, 739
Bme1390I CCNGG 3 cut(s) 195, 250, 854
Bme18I GGWCC 7 cut(s) 6, 81, 96, 221, 273, 451, 600
BmgT120I GGNCC 8 cut(s) 6, 81, 96, 221, 247, 273, 451, 600
BmiI GGNNCC 5 cut(s) 7, 405, 452, 601, 787
BmrFI CCNGG 3 cut(s) 195, 250, 854
BpiI GAAGAC 2 cut(s) 354, 498
BpmI CTGGAG 1 cut(s) 663
Bpu10I CCTNAGC 2 cut(s) 264, 822
BpuMI CCSGG 1 cut(s) 250
BsaI GGTCTC 2 cut(s) 692, 851
BsaJI CCNNGG 3 cut(s) 194, 217, 269
BsaWI WCCGGW 3 cut(s) 83, 98, 140
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 223, 275, 597, 683
Bse118I RCCGGY 3 cut(s) 98, 160, 653
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 83
BseBI CCWGG 2 cut(s) 195, 854
BseDI CCNNGG 3 cut(s) 194, 217, 269
BseGI GGATG 1 cut(s) 849
BseLI CCNNNNNNNGG 5 cut(s) 90, 223, 275, 597, 683
BseMII CTCAG 4 cut(s) 252, 276, 278, 456
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 158
BseXI GCAGC 6 cut(s) 22, 100, 189, 574, 721, 724
BseYI CCCAGC 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 160, 248, 772
BshNI GGYRCC 1 cut(s) 785
BshTI ACCGGT 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 835
BsiSI CCGG 9 cut(s) 84, 99, 141, 157, 161, 224, 250, 276, 654
BslI CCNNNNNNNGG 5 cut(s) 90, 223, 275, 597, 683
BsmAI GTCTC 2 cut(s) 692, 851
BsnI GGCC 3 cut(s) 160, 248, 772
Bso31I GGTCTC 2 cut(s) 692, 851
Bsp1286I GDGCHC 1 cut(s) 835
Bsp13I TCCGGA 1 cut(s) 83
Bsp143I GATC 3 cut(s) 198, 641, 710
BspACI CCGC 1 cut(s) 740
BspANI GGCC 3 cut(s) 160, 248, 772
BspCNI CTCAG 4 cut(s) 251, 277, 277, 455
BspEI TCCGGA 1 cut(s) 83
BspLI GGNNCC 5 cut(s) 7, 405, 452, 601, 787
BspPI GGATC 3 cut(s) 206, 649, 718
BspT107I GGYRCC 1 cut(s) 785
BspTNI GGTCTC 2 cut(s) 692, 851
BsrFI RCCGGY 3 cut(s) 98, 160, 653
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 3 cut(s) 98, 160, 653
BssECI CCNNGG 3 cut(s) 194, 217, 269
BssMI GATC 3 cut(s) 198, 641, 710
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 195, 854
Bst4CI ACNGT 2 cut(s) 497, 731
BstC8I GCNNGC 1 cut(s) 742
BstDEI CTNAG 6 cut(s) 167, 238, 264, 285, 442, 822
BstF5I GGATG 1 cut(s) 849
BstKTI GATC 3 cut(s) 201, 644, 713
BstMAI GTCTC 2 cut(s) 692, 851
BstMBI GATC 3 cut(s) 198, 641, 710
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 32, 431
BstNI CCWGG 2 cut(s) 195, 854
BstSCI CCNGG 3 cut(s) 193, 248, 852
BstSFI CTRYAG 1 cut(s) 607
BstV1I GCAGC 6 cut(s) 22, 100, 189, 574, 721, 724
BstV2I GAAGAC 2 cut(s) 354, 498
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 160, 248, 772
BtsCI GGATG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 16, 720, 736
Cac8I GCNNGC 1 cut(s) 742
CaiI CAGNNNCTG 1 cut(s) 644
Cfr10I RCCGGY 3 cut(s) 98, 160, 653
Cfr13I GGNCC 8 cut(s) 6, 81, 96, 221, 247, 273, 451, 600
Csp6I GTAC 2 cut(s) 657, 786
CspAI ACCGGT 1 cut(s) 98
CviQI GTAC 2 cut(s) 657, 786
DdeI CTNAG 6 cut(s) 167, 238, 264, 285, 442, 822
DpnI GATC 3 cut(s) 200, 643, 712
DpnII GATC 3 cut(s) 198, 641, 710
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 158
EagI CGGCCG 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 772
Eco31I GGTCTC 2 cut(s) 692, 851
Eco47I GGWCC 7 cut(s) 6, 81, 96, 221, 273, 451, 600
Eco52I CGGCCG 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 792
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 193, 852
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaiI YATR 5 cut(s) 125, 297, 401, 508, 609
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 6 cut(s) 36, 114, 178, 588, 735, 738
FokI GGATG 1 cut(s) 836
Fsp4HI GCNGC 6 cut(s) 36, 114, 178, 588, 735, 738
FspBI CTAG 4 cut(s) 117, 291, 323, 779
GluI GCNGC 6 cut(s) 36, 114, 178, 588, 735, 738
GsaI CCCAGC 1 cut(s) 425
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 3 cut(s) 160, 248, 772
HapII CCGG 9 cut(s) 84, 99, 141, 157, 161, 224, 250, 276, 654
HinfI GANTC 4 cut(s) 190, 287, 473, 758
HpaII CCGG 9 cut(s) 84, 99, 141, 157, 161, 224, 250, 276, 654
HphI GGTGA 2 cut(s) 252, 273
Hpy166II GTNNAC 2 cut(s) 96, 302
Hpy188I TCNGA 4 cut(s) 135, 218, 445, 624
Hpy188III TCNNGA 2 cut(s) 84, 187
Hpy8I GTNNAC 2 cut(s) 96, 302
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 2 cut(s) 497, 731
HpyCH4IV ACGT 2 cut(s) 30, 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 431
HpyF3I CTNAG 6 cut(s) 167, 238, 264, 285, 442, 822
HpySE526I ACGT 2 cut(s) 30, 42
Kpn2I TCCGGA 1 cut(s) 83
KpnI GGTACC 1 cut(s) 789
Kzo9I GATC 3 cut(s) 198, 641, 710
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 6 cut(s) 22, 100, 189, 574, 721, 724
MaeI CTAG 4 cut(s) 117, 291, 323, 779
MaeII ACGT 2 cut(s) 30, 42
MaeIII GTNAC 2 cut(s) 55, 802
MalI GATC 3 cut(s) 200, 643, 712
MboI GATC 3 cut(s) 198, 641, 710
MboII GAAGA 5 cut(s) 99, 199, 359, 503, 624
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 835
MluCI AATT 7 cut(s) 62, 73, 390, 540, 550, 724, 879
MlyI GAGTC 2 cut(s) 184, 296
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 9 cut(s) 40, 72, 212, 247, 273, 464, 601, 687, 762
MroI TCCGGA 1 cut(s) 83
MseI TTAA 4 cut(s) 539, 693, 837, 883
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 9 cut(s) 84, 99, 141, 157, 161, 224, 250, 276, 654
MspR9I CCNGG 3 cut(s) 195, 250, 854
MvaI CCWGG 2 cut(s) 195, 854
MwoI GCNNNNNNNGC 2 cut(s) 32, 431
NciI CCSGG 1 cut(s) 250
NdeII GATC 3 cut(s) 198, 641, 710
NlaIV GGNNCC 5 cut(s) 7, 405, 452, 601, 787
NmuCI GTSAC 2 cut(s) 55, 802
PceI AGGCCT 1 cut(s) 772
PfeI GAWTC 2 cut(s) 473, 758
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 6 cut(s) 37, 115, 179, 589, 736, 739
PleI GAGTC 2 cut(s) 184, 295
PpsI GAGTC 2 cut(s) 184, 295
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 193, 852
PspFI CCCAGC 1 cut(s) 421
PspGI CCWGG 2 cut(s) 193, 852
PspN4I GGNNCC 5 cut(s) 7, 405, 452, 601, 787
PspPI GGNCC 8 cut(s) 6, 81, 96, 221, 247, 273, 451, 600
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 2 cut(s) 658, 787
RsaNI GTAC 2 cut(s) 657, 786
SaqAI TTAA 4 cut(s) 539, 693, 837, 883
SatI GCNGC 6 cut(s) 36, 114, 178, 588, 735, 738
Sau3AI GATC 3 cut(s) 198, 641, 710
Sau96I GGNCC 8 cut(s) 6, 81, 96, 221, 247, 273, 451, 600
SchI GAGTC 2 cut(s) 184, 296
ScrFI CCNGG 3 cut(s) 195, 250, 854
SduI GDGCHC 1 cut(s) 835
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 7 cut(s) 6, 81, 96, 221, 273, 451, 600
Sse9I AATT 7 cut(s) 62, 73, 390, 540, 550, 724, 879
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 1 cut(s) 740
SspI AATATT 2 cut(s) 108, 412
SspMI CTAG 4 cut(s) 117, 291, 323, 779
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 3 cut(s) 193, 248, 852
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 497, 731
TaiI ACGT 2 cut(s) 33, 45
TaqI TCGA 1 cut(s) 201
TasI AATT 7 cut(s) 62, 73, 390, 540, 550, 724, 879
TfiI GAWTC 2 cut(s) 473, 758
Tru1I TTAA 4 cut(s) 539, 693, 837, 883
Tru9I TTAA 4 cut(s) 539, 693, 837, 883
TscAI CASTG 3 cut(s) 16, 720, 736
TseFI GTSAC 2 cut(s) 55, 802
TseI GCWGC 6 cut(s) 35, 113, 177, 587, 734, 737
Tsp45I GTSAC 2 cut(s) 55, 802
TspDTI ATGAA 1 cut(s) 736
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 3 cut(s) 16, 720, 736
VpaK11BI GGWCC 7 cut(s) 6, 81, 96, 221, 273, 451, 600
XapI RAATTY 3 cut(s) 62, 390, 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 4 cut(s) 117, 291, 323, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.