RchiOBHm_Chr4g0404571

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000492
Physical Location & Seq
Forward (+)
24344516 .. 24345675
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37611

Sequence Viewer

Length: 927 bp
ATGCCGAATCACATTATGTCTTGTTTCAAATGTTCAAAGAAGTTGACCAACAACATTGATAAACAAGCCAGATCCTTTTTCTGGGGCTCAGACATGAAATGTGCTCCTGTTGCTTGGGAGGAGGTGTGCCAACCCAAGTCAACAGGTGGCTTGGGCATTAGACCTTCAGCTTATTTTAATAATGCAGCTATAGCTAAACTAGCTTGGAAAGTAATCAATGATCAGGATAACTGGTGGTCACAAATTATGAGAAGAAAGTATCTAAGAAAGGTTTCTTTTTTTCAGGCCAAGAAGAAACAGAAGAACTCTATTGCTTGGAGTGGTGTCTTGGATGCAAGAGACCTGATCATGAAAGGAATGAGGTGGATTATAGGTAATGGTAAGAATATTAAATTTTGGACTTTTAATTGGGCCTTTGATTGTCATTTACTTCATCTCATTCCTGATAATAAAAGGAATATGATTAACCTAGAAGAATCAGTGGCTGAGTCTATTATTAATGGTAAATGGGACAAGGCAAAGCTTGCTTTTGTTCTAGACCCTAATATTGTGAAGCAAATTCTTAGTATTCCTTTACCTGTATGTGAACAGGAAGATGAATATATTTGGGGTCCCTCCTCAAATGGTAAATTTTCTATTAAATCTGCTACGTGGTTGCAATATGATCATCTTCGTAAGCATAGCCAGTCCAAGTTGATTAATAAGCTCTGGAAGCTTAATGTTCAACCAAAAATTAAAATCTTTGGTTGGCTGTTACTGAGAGGAAGACTCAAAACGAGGGACAGACTTTCCAGGTTTGGGATTATTAATGATAACTCGTGTCTTCTCTGTAATAGAGATAATGAGACTGCTGATCATTTGTTTGGCTATTGCGAATTCACTAAGGAAGTGTGGAGGTTGGCAAACATTAACACCCCAGTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

308

Amino Acids

35.88

Weight (kDa)

9.66

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 220 - 298 4.3e-22 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 4 cut(s) 392, 558, 629, 875
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 81, 798
AgsI TTSAA 3 cut(s) 28, 36, 725
AjnI CCWGG 1 cut(s) 791
AleI CACNNNNGTG 1 cut(s) 917
AluBI AGCT 7 cut(s) 170, 188, 194, 203, 523, 706, 715
AluI AGCT 7 cut(s) 170, 188, 194, 203, 523, 706, 715
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 333, 839
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 285, 411
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 4 cut(s) 392, 558, 629, 875
AseI ATTAAT 3 cut(s) 498, 699, 807
Asp700I GAANNNNTTC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 411, 611
AvaII GGWCC 1 cut(s) 611
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 817
BbsI GAAGAC 2 cut(s) 772, 815
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 793
BclI TGATCA 4 cut(s) 220, 345, 664, 853
BcoDI GTCTC 2 cut(s) 333, 839
BfaI CTAG 4 cut(s) 200, 470, 536, 925
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 793
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 411, 611
BmiI GGNNCC 2 cut(s) 612, 613
BmrFI CCNGG 1 cut(s) 793
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 911
BpiI GAAGAC 2 cut(s) 772, 815
BplI GAGNNNNNCTC 2 cut(s) 753, 785
BsaAI YACGTR 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 798
Bse1I ACTGG 3 cut(s) 236, 685, 917
BseBI CCWGG 1 cut(s) 793
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 81, 798
BseMII CTCAG 3 cut(s) 102, 477, 749
BseNI ACTGG 3 cut(s) 236, 685, 917
BseRI GAGGAG 2 cut(s) 134, 607
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 287, 413
BsiHKAI GWGCWC 1 cut(s) 106
BslFI GGGAC 3 cut(s) 524, 597, 794
BslI CCNNNNNNNGG 2 cut(s) 81, 798
BsmAI GTCTC 2 cut(s) 333, 839
BsmFI GGGAC 3 cut(s) 524, 597, 794
BsnI GGCC 2 cut(s) 287, 413
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 89, 106
Bsp143I GATC 5 cut(s) 71, 220, 345, 664, 853
BspANI GGCC 2 cut(s) 287, 413
BspCNI CTCAG 3 cut(s) 101, 478, 750
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 612, 613
BspPI GGATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 333
BsrI ACTGG 3 cut(s) 236, 685, 917
BssMI GATC 5 cut(s) 71, 220, 345, 664, 853
BssSI CACGAG 1 cut(s) 817
Bst2BI CACGAG 1 cut(s) 817
Bst2UI CCWGG 1 cut(s) 793
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 6 cut(s) 88, 263, 486, 563, 758, 882
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 5 cut(s) 74, 223, 348, 667, 856
BstMAI GTCTC 2 cut(s) 333, 839
BstMBI GATC 5 cut(s) 71, 220, 345, 664, 853
BstMWI GCNNNNNNNGC 5 cut(s) 110, 191, 200, 524, 712
BstNI CCWGG 1 cut(s) 793
BstSCI CCNGG 1 cut(s) 791
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 2 cut(s) 772, 815
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 2 cut(s) 287, 413
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 486, 924
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 411, 611
CviAII CATG 2 cut(s) 94, 349
DdeI CTNAG 6 cut(s) 88, 263, 486, 563, 758, 882
DpnI GATC 5 cut(s) 73, 222, 347, 666, 855
DpnII GATC 5 cut(s) 71, 220, 345, 664, 853
Eco24I GRGCYC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 611
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 791
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 2 cut(s) 97, 352
FaqI GGGAC 3 cut(s) 524, 597, 794
FatI CATG 2 cut(s) 93, 348
FbaI TGATCA 4 cut(s) 220, 345, 664, 853
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 4 cut(s) 200, 470, 536, 925
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 287, 413
Hin1II CATG 2 cut(s) 97, 352
HincII GTYRAC 2 cut(s) 45, 141
HindII GTYRAC 2 cut(s) 45, 141
HindIII AAGCTT 2 cut(s) 521, 713
HinfI GANTC 4 cut(s) 7, 476, 488, 768
Hpy166II GTNNAC 4 cut(s) 45, 141, 587, 922
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 5 cut(s) 224, 349, 443, 536, 709
Hpy8I GTNNAC 4 cut(s) 45, 141, 587, 922
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 3 cut(s) 185, 335, 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 191, 200, 524, 712
HpyF3I CTNAG 6 cut(s) 88, 263, 486, 563, 758, 882
HpySE526I ACGT 1 cut(s) 650
Hsp92II CATG 2 cut(s) 97, 352
KflI GGGWCCC 1 cut(s) 611
Ksp22I TGATCA 4 cut(s) 220, 345, 664, 853
Kzo9I GATC 5 cut(s) 71, 220, 345, 664, 853
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 322
MaeI CTAG 4 cut(s) 200, 470, 536, 925
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 2 cut(s) 237, 753
MalI GATC 5 cut(s) 73, 222, 347, 666, 855
MboI GATC 5 cut(s) 71, 220, 345, 664, 853
MboII GAAGA 8 cut(s) 264, 304, 313, 485, 605, 662, 777, 815
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 89, 106
MluCI AATT 7 cut(s) 243, 392, 406, 558, 629, 732, 875
MlyI GAGTC 2 cut(s) 497, 762
MnlI CCTC 8 cut(s) 112, 115, 354, 625, 628, 755, 771, 888
MroXI GAANNNNTTC 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 917
MspR9I CCNGG 1 cut(s) 793
MvaI CCWGG 1 cut(s) 793
MwoI GCNNNNNNNGC 5 cut(s) 110, 191, 200, 524, 712
NdeII GATC 5 cut(s) 71, 220, 345, 664, 853
NlaIII CATG 2 cut(s) 97, 352
NlaIV GGNNCC 2 cut(s) 612, 613
NmuCI GTSAC 1 cut(s) 237
OliI CACNNNNGTG 1 cut(s) 917
PagI TCATGA 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 7, 476
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 2 cut(s) 496, 762
PpsI GAGTC 2 cut(s) 496, 762
Ppu21I YACGTR 1 cut(s) 651
PpuMI RGGWCCY 1 cut(s) 611
PshBI ATTAAT 3 cut(s) 498, 699, 807
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 791
PspGI CCWGG 1 cut(s) 791
PspN4I GGNNCC 2 cut(s) 612, 613
PspPI GGNCC 2 cut(s) 411, 611
PspPPI RGGWCCY 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 917
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 5 cut(s) 71, 220, 345, 664, 853
Sau96I GGNCC 2 cut(s) 411, 611
SchI GAGTC 2 cut(s) 497, 762
ScrFI CCNGG 1 cut(s) 793
SduI GDGCHC 2 cut(s) 89, 106
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 917
Sse9I AATT 7 cut(s) 243, 392, 406, 558, 629, 732, 875
SspI AATATT 2 cut(s) 388, 547
SspMI CTAG 4 cut(s) 200, 470, 536, 925
StyD4I CCNGG 1 cut(s) 791
TaiI ACGT 1 cut(s) 653
TasI AATT 7 cut(s) 243, 392, 406, 558, 629, 732, 875
TfiI GAWTC 2 cut(s) 7, 476
TscAI CASTG 2 cut(s) 486, 924
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 4 cut(s) 110, 365, 422, 612
TspRI CASTG 2 cut(s) 486, 924
VpaK11BI GGWCC 1 cut(s) 611
VspI ATTAAT 3 cut(s) 498, 699, 807
XapI RAATTY 4 cut(s) 392, 558, 629, 875
XbaI TCTAGA 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 271
XspI CTAG 4 cut(s) 200, 470, 536, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.