Rmu_sc0000469.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000469.1
OG0000492
Physical Location & Seq
Reverse (-)
18511 .. 20188
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000469.1_g000005.1.cds

Sequence Viewer

Length: 729 bp
atggcctggaagggcattcttgattctcgtgaccttatcctccagggaatgagatggataattggttctggtaaggatgttaagttttggacctttaactgggtttttgactttcctttatttaatcttttggatgatgctgctaaggctgttgttgatttaaatgaatctgttagtgactatatcacttttgggaactggaatgttcaaaaattggcttcggttttggatcagcatattattgaccatattgttggcattcctattccggtttcagagttgaaagaccattttgtttggggtcctgcaacaaatggatcattctccgttaaatctgctacttggctgcaatgcaattctaattctcataggactctaatggtaagcctatcttggggggtgcccgtaagctccgttaaagctcacggcagggctgctgcgggattcattatcagggactctaatggtaagcctatcttggggggtgcccgtaaaatggtgtcacatcaatccttgatcgccgacattacctgccttgctgcgaaatttgaggctgtttccttctctcatgattttcttgaggccaatttcgttgcggatcttatcacctcaatgggacatgctctttccaatccccagatttggttcaattccattccgactgtggcctcgacagcgttgcttctggattctgctagccttgggtgtccaaggggtttcatgttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

6.43

Isoelectric Point (pI)

24.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 400, 485
AciI CCGC 2 cut(s) 440, 596
AclWI GGATC 3 cut(s) 237, 325, 606
AcsI RAATTY 1 cut(s) 545
AfiI CCNNNNNNNGG 5 cut(s) 99, 394, 479, 496, 642
AgsI TTSAA 3 cut(s) 209, 283, 649
AjnI CCWGG 2 cut(s) 5, 42
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 411, 422
AluI AGCT 2 cut(s) 411, 422
AlwI GGATC 3 cut(s) 237, 325, 606
AoxI GGCC 3 cut(s) 3, 582, 666
ApeKI GCWGC 5 cut(s) 140, 346, 434, 437, 539
ApoI RAATTY 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 90, 302
AsuHPI GGTGA 1 cut(s) 598
AsuNHI GCTAGC 1 cut(s) 695
AvaII GGWCC 2 cut(s) 90, 302
BaeGI GKGCMC 2 cut(s) 405, 490
BanI GGYRCC 2 cut(s) 400, 485
BauI CACGAG 1 cut(s) 27
BbvI GCAGC 5 cut(s) 127, 333, 421, 424, 526
BccI CCATC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 2 cut(s) 7, 44
BfaI CTAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 539
BisI GCNGC 5 cut(s) 141, 347, 435, 438, 540
BlsI GCNGC 5 cut(s) 142, 348, 436, 439, 541
Bme1390I CCNGG 2 cut(s) 7, 44
Bme18I GGWCC 2 cut(s) 90, 302
BmgT120I GGNCC 2 cut(s) 90, 302
BmiI GGNNCC 3 cut(s) 303, 402, 487
BmrFI CCNGG 2 cut(s) 7, 44
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 699
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 43, 700, 710
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 394, 479, 496, 642
Bse1I ACTGG 2 cut(s) 104, 203
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 7, 44
BseDI CCNNGG 3 cut(s) 43, 700, 710
BseGI GGATG 2 cut(s) 82, 139
BseLI CCNNNNNNNGG 5 cut(s) 99, 394, 479, 496, 642
BseMI GCAATG 1 cut(s) 356
BseNI ACTGG 2 cut(s) 104, 203
BseSI GKGCMC 2 cut(s) 405, 490
BseXI GCAGC 5 cut(s) 127, 333, 421, 424, 526
BshFI GGCC 3 cut(s) 5, 584, 668
BshNI GGYRCC 2 cut(s) 400, 485
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 470, 630
BslI CCNNNNNNNGG 5 cut(s) 99, 394, 479, 496, 642
BsmFI GGGAC 2 cut(s) 470, 630
BsmI GAATGC 2 cut(s) 15, 258
BsnI GGCC 3 cut(s) 5, 584, 668
Bsp1286I GDGCHC 2 cut(s) 405, 490
Bsp143I GATC 4 cut(s) 229, 317, 516, 598
BspACI CCGC 2 cut(s) 440, 596
BspANI GGCC 3 cut(s) 5, 584, 668
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 3 cut(s) 303, 402, 487
BspMI ACCTGC 1 cut(s) 539
BspOI GCTAGC 1 cut(s) 699
BspPI GGATC 3 cut(s) 237, 325, 606
BspT107I GGYRCC 2 cut(s) 400, 485
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 2 cut(s) 104, 203
BssECI CCNNGG 3 cut(s) 43, 700, 710
BssMI GATC 4 cut(s) 229, 317, 516, 598
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 700, 710
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 7, 44
Bst4CI ACNGT 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 82, 139
BstKTI GATC 4 cut(s) 232, 320, 519, 601
BstMBI GATC 4 cut(s) 229, 317, 516, 598
BstMWI GCNNNNNNNGC 2 cut(s) 146, 674
BstNI CCWGG 2 cut(s) 7, 44
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 5, 42
BstSLI GKGCMC 2 cut(s) 405, 490
BstV1I GCAGC 5 cut(s) 127, 333, 421, 424, 526
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 3 cut(s) 5, 584, 668
BtsCI GGATG 2 cut(s) 82, 139
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 1 cut(s) 697
CciI TCATGA 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 90, 302
CviAII CATG 3 cut(s) 569, 620, 721
DdeI CTNAG 1 cut(s) 144
DpnI GATC 4 cut(s) 231, 319, 518, 600
DpnII GATC 4 cut(s) 229, 317, 516, 598
DraI TTTAAA 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 700, 710
Eco47I GGWCC 2 cut(s) 90, 302
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 5, 42
EcoT14I CCWWGG 2 cut(s) 700, 710
ErhI CCWWGG 2 cut(s) 700, 710
FaeI CATG 3 cut(s) 572, 623, 724
FaiI YATR 7 cut(s) 183, 237, 249, 369, 570, 621, 722
FalI AAGNNNNNCTT 4 cut(s) 376, 408, 461, 493
FaqI GGGAC 2 cut(s) 470, 630
FatI CATG 3 cut(s) 568, 619, 720
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 5 cut(s) 141, 347, 435, 438, 540
FokI GGATG 2 cut(s) 89, 146
Fsp4HI GCNGC 5 cut(s) 141, 347, 435, 438, 540
FspBI CTAG 1 cut(s) 696
GluI GCNGC 5 cut(s) 141, 347, 435, 438, 540
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 3 cut(s) 5, 584, 668
HapII CCGG 1 cut(s) 269
Hin1II CATG 3 cut(s) 572, 623, 724
HinfI GANTC 6 cut(s) 23, 167, 373, 444, 458, 689
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 598
Hpy188I TCNGA 2 cut(s) 277, 660
Hpy188III TCNNGA 5 cut(s) 20, 29, 569, 578, 686
HpyAV CCTTC 2 cut(s) 4, 571
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4V TGCA 3 cut(s) 308, 349, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 674
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 572, 623, 724
Kzo9I GATC 4 cut(s) 229, 317, 516, 598
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 5 cut(s) 127, 333, 421, 424, 526
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 696
MaeIII GTNAC 3 cut(s) 29, 176, 501
MalI GATC 4 cut(s) 231, 319, 518, 600
MboI GATC 4 cut(s) 229, 317, 516, 598
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 405, 490
MluCI AATT 7 cut(s) 60, 212, 355, 361, 545, 586, 649
MlyI GAGTC 2 cut(s) 367, 452
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 5 cut(s) 50, 544, 574, 619, 679
MseI TTAA 6 cut(s) 81, 96, 123, 161, 330, 417
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 7, 44
Mva1269I GAATGC 2 cut(s) 15, 258
MvaI CCWGG 2 cut(s) 7, 44
MwoI GCNNNNNNNGC 2 cut(s) 146, 674
NdeII GATC 4 cut(s) 229, 317, 516, 598
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 3 cut(s) 572, 623, 724
NlaIV GGNNCC 3 cut(s) 303, 402, 487
NmuCI GTSAC 3 cut(s) 29, 176, 501
NspI RCATGY 1 cut(s) 623
PagI TCATGA 1 cut(s) 568
PctI GAATGC 2 cut(s) 15, 258
PfeI GAWTC 4 cut(s) 23, 167, 444, 689
PkrI GCNGC 5 cut(s) 142, 348, 436, 439, 541
PleI GAGTC 2 cut(s) 367, 452
PpsI GAGTC 2 cut(s) 367, 452
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 5, 42
PspGI CCWGG 2 cut(s) 5, 42
PspN4I GGNNCC 3 cut(s) 303, 402, 487
PspPI GGNCC 2 cut(s) 90, 302
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 6 cut(s) 81, 96, 123, 161, 330, 417
SatI GCNGC 5 cut(s) 141, 347, 435, 438, 540
Sau3AI GATC 4 cut(s) 229, 317, 516, 598
Sau96I GGNCC 2 cut(s) 90, 302
SchI GAGTC 2 cut(s) 367, 452
ScrFI CCNGG 2 cut(s) 7, 44
SduI GDGCHC 2 cut(s) 405, 490
SetI ASST 6 cut(s) 36, 95, 413, 424, 533, 611
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 2 cut(s) 90, 302
SmiI ATTTAAAT 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 7 cut(s) 60, 212, 355, 361, 545, 586, 649
SsiI CCGC 2 cut(s) 440, 596
SspMI CTAG 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 5, 42
StyI CCWWGG 2 cut(s) 700, 710
SwaI ATTTAAAT 1 cut(s) 162
TaaI ACNGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 671
TasI AATT 7 cut(s) 60, 212, 355, 361, 545, 586, 649
TfiI GAWTC 4 cut(s) 23, 167, 444, 689
Tru1I TTAA 6 cut(s) 81, 96, 123, 161, 330, 417
Tru9I TTAA 6 cut(s) 81, 96, 123, 161, 330, 417
TseFI GTSAC 3 cut(s) 29, 176, 501
TseI GCWGC 5 cut(s) 140, 346, 434, 437, 539
Tsp45I GTSAC 3 cut(s) 29, 176, 501
TspDTI ATGAA 3 cut(s) 180, 436, 709
TspGWI ACGGA 2 cut(s) 316, 403
VpaK11BI GGWCC 2 cut(s) 90, 302
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.