FvH4_5g15581

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000492
Physical Location & Seq
Forward (+)
8787665 .. 8794135
6471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15581.t1

Sequence Viewer

Length: 1611 bp
ATGGACCCAAATTCTATCTATTCTCCTTCCTCCGCGGTTGACTTTTTTAATCACTTTTATGGACTTATTCATCACTCCCAGGAGAACTTTGAGGATGCCTATGAGGAGGACAAGATGATAAATAACAATGTTATGGATGGTGATTATGGCGCTAATGGTATGTTTGGTGTTGTGAATGAGAATGATGAAATGGATGTGAGTGCTGGGTTTCGCAGCCCTTTAAAGAGAACCAGAGAGATGTTCAAAGATGAAGTGGATTCTCATCAGGCTAGGACCATGGAGGAAAGGAACTTAAGCATTTCTCAGGACCTCCAAACTCTGCAACAAGAGGAAGAGCTTTTCTGGGCTGAAAGAGCCAAGGCAAATTGGCTAAAACTAGGGGATCGAAACACAAAGTATTTTCAACTGAAGGCAAATTTCAGGAAGAAGTTAAATCATATTGGCCGAATTAAAGACGACAACAATTTTTGGTTAACAAACCCAGAGGATATCATCAAGCACTTTGTGCAGGATTTTAAGAAACGTTTTACTGCTAATAACTTCCCTGATATGAATTTGGAGAAATTATTGGATGGTAATTGGAGTAGAACCAAGCTGCTGGAATTCTTGGATGCTTCGATTGTGGATCAAATTTGTGGTATCCCTATTCCTTCTACTAACCAACAAGATGCTTTCATTTGGGGCCCCTGCCCGAATGGTGAGTTCACCATAAAATCAGCTACTTGGCTTCAATCTTCAGATCTTGATCCTCATGATCAATCCCCTCTTTTAAAGAAGGAGGAAACTATTTCCCATTTTTTTTGCAAATGCCCAATTGCTGGTCAAGTTTGGACTATTGCTCAGTGCAATGACATCCACAATGCTGATAACCTGGTTCAAAGGTTGAATGATATTTTTGTTAATGCTCTTTTTGATGCTACTAAATTTGAGAGAATTCTAAACCTTTGCAGGCAGATTTGGCATAAGCGCACCAACCTAATCTTTAAAAATGAGGCCTTCTCTCCCTTTGTTGTTGTTGTTGTTGCTGCTGTGTTTCAGAATCGTAATCATCTCCACCAAGAGATGGCTTCCCAGTTCCCCTTGGCTCCCTCTTCCATCAGATGGACTCCTCCTCCTCAAAATATAGTCAAAGAGAATTTTGATGGTTCGGTGCTTCAACATGATTCTAGTGCTGCTGTAGGTTTTATTTTTCGAGACTGCTCGGGTTGCCCTTTCTTTGCTTCTGCTCGAAAGTTGGGGAAAGCCAATGTTCCCATTGCAGAAGCTACTGCCCTTAGGGACAGCCTTTTAAAAGCCAAAAAGTTAAACTACTCTCATCTTATGGTTGAAGGAGACTCTGCTCTCATAATTAATTGTGTTACTGAGCGTTTCAAGTGCCCCTGGAAGCTGCTCCAAATTGTCCAAGACATAAAAAAGATTGCCTCTTCCTTCAGTTTGATCTCTTTCCACCATGTTCTTCGTGAGGCAAACTTTACAGCCAATGCCTTAGCAAATTTGGGGCAAAATCTGGATACTCAGCATTGTTGGGAGTCGAATTTGCTGAGCTCTGTTAGGGTAACAGTGAATTTTGATTTATTTGGTGGTGGTTGCCTGAGGGGTGGTTCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

537

Amino Acids

61.14

Weight (kDa)

6.03

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 379 - 499 1.1e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 818, 1063, 1101
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 33, 35
AclI AACGTT 1 cut(s) 523
AclWI GGATC 3 cut(s) 390, 633, 740
AcoI YGGCCR 1 cut(s) 442
AcuI CTGAAG 3 cut(s) 428, 720, 1414
AdeI CACNNNGTG 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 818, 1063, 1101
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 8 cut(s) 244, 404, 731, 878, 886, 1157, 1328, 1372
AjnI CCWGG 3 cut(s) 78, 870, 1379
AluBI AGCT 6 cut(s) 337, 595, 719, 1265, 1387, 1545
AluI AGCT 6 cut(s) 337, 595, 719, 1265, 1387, 1545
Alw21I GWGCWC 1 cut(s) 1547
Alw26I GTCTC 2 cut(s) 1188, 1326
AlwI GGATC 3 cut(s) 390, 633, 740
Ama87I CYCGRG 1 cut(s) 1201
AoxI GGCC 3 cut(s) 442, 682, 993
ApaI GGGCCC 1 cut(s) 686
ApeKI GCWGC 5 cut(s) 213, 595, 1025, 1172, 1387
AseI ATTAAT 1 cut(s) 1350
AspLEI GCGC 2 cut(s) 152, 969
AspS9I GGNCC 5 cut(s) 4, 273, 307, 682, 683
AsuHPI GGTGA 3 cut(s) 152, 697, 710
AvaI CYCGRG 1 cut(s) 1201
AvaII GGWCC 3 cut(s) 4, 273, 307
AxyI CCTNAGG 2 cut(s) 1274, 1592
BaeGI GKGCMC 2 cut(s) 686, 1379
BanII GRGCYC 2 cut(s) 686, 1547
Bbv12I GWGCWC 1 cut(s) 1547
BbvI GCAGC 5 cut(s) 225, 582, 1012, 1159, 1374
BccI CCATC 6 cut(s) 131, 566, 1057, 1095, 1103, 1136
BciT130I CCWGG 3 cut(s) 80, 872, 1381
BciVI GTATCC 2 cut(s) 650, 1504
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 1188, 1326
BfaI CTAG 3 cut(s) 270, 377, 1167
BfmI CTRYAG 1 cut(s) 1176
BfoI RGCGCY 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 292
BfuI GTATCC 2 cut(s) 650, 1504
BglII AGATCT 1 cut(s) 739
BisI GCNGC 5 cut(s) 214, 596, 1026, 1173, 1388
BlpI GCTNAGC 1 cut(s) 1541
BlsI GCNGC 5 cut(s) 215, 597, 1027, 1174, 1389
Bme1390I CCNGG 3 cut(s) 80, 872, 1381
Bme18I GGWCC 3 cut(s) 4, 273, 307
BmeT110I CYCGRG 1 cut(s) 1201
BmgT120I GGNCC 5 cut(s) 4, 273, 307, 682, 683
BmiI GGNNCC 5 cut(s) 6, 683, 684, 685, 1086
BmrFI CCNGG 3 cut(s) 80, 872, 1381
BmrI ACTGGG 1 cut(s) 1066
BmsI GCATC 4 cut(s) 85, 601, 658, 904
BmuI ACTGGG 1 cut(s) 1066
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
Bpu10I CCTNAGC 1 cut(s) 1486
Bpu1102I GCTNAGC 1 cut(s) 1541
BsaBI GATNNNNATC 2 cut(s) 261, 744
BsaJI CCNNGG 6 cut(s) 33, 78, 276, 357, 1080, 1379
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 3 cut(s) 818, 1063, 1101
Bse1I ACTGG 1 cut(s) 1072
Bse21I CCTNAGG 2 cut(s) 1274, 1592
Bse3DI GCAATG 2 cut(s) 853, 1254
Bse8I GATNNNNATC 2 cut(s) 261, 744
BseBI CCWGG 3 cut(s) 80, 872, 1381
BseDI CCNNGG 6 cut(s) 33, 78, 276, 357, 1080, 1379
BseGI GGATG 6 cut(s) 100, 142, 199, 577, 616, 852
BseJI GATNNNNATC 2 cut(s) 261, 744
BseLI CCNNNNNNNGG 3 cut(s) 818, 1063, 1101
BseMI GCAATG 2 cut(s) 853, 1254
BseMII CTCAG 6 cut(s) 317, 854, 1353, 1529, 1532, 1583
BseNI ACTGG 1 cut(s) 1072
BseRI GAGGAG 4 cut(s) 119, 1098, 1101, 1104
BseSI GKGCMC 2 cut(s) 686, 1379
BseXI GCAGC 5 cut(s) 225, 582, 1012, 1159, 1374
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 3 cut(s) 444, 684, 995
BsiHKAI GWGCWC 1 cut(s) 1547
BsiHKCI CYCGRG 1 cut(s) 1201
BslFI GGGAC 1 cut(s) 1292
BslI CCNNNNNNNGG 3 cut(s) 818, 1063, 1101
BsmAI GTCTC 2 cut(s) 1188, 1326
BsmFI GGGAC 1 cut(s) 1292
BsnI GGCC 3 cut(s) 444, 684, 995
BsoBI CYCGRG 1 cut(s) 1201
Bsp120I GGGCCC 1 cut(s) 682
Bsp1286I GDGCHC 3 cut(s) 686, 1379, 1547
Bsp143I GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
Bsp1720I GCTNAGC 1 cut(s) 1541
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 33, 35
BspANI GGCC 3 cut(s) 444, 684, 995
BspCNI CTCAG 6 cut(s) 316, 853, 1354, 1528, 1533, 1584
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 5 cut(s) 6, 683, 684, 685, 1086
BspPI GGATC 3 cut(s) 390, 633, 740
BspQI GCTCTTC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 853, 1254
BsrI ACTGG 1 cut(s) 1072
BssECI CCNNGG 6 cut(s) 33, 78, 276, 357, 1080, 1379
BssMI GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
BssT1I CCWWGG 3 cut(s) 276, 357, 1080
Bst2UI CCWGG 3 cut(s) 80, 872, 1381
Bst4CI ACNGT 1 cut(s) 1561
Bst6I CTCTTC 3 cut(s) 327, 1096, 1429
BstAFI CTTAAG 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 950
BstDEI CTNAG 8 cut(s) 303, 840, 1274, 1362, 1486, 1515, 1541, 1592
BstDSI CCRYGG 2 cut(s) 33, 276
BstF5I GGATG 6 cut(s) 100, 142, 199, 577, 616, 852
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 969
BstKTI GATC 6 cut(s) 385, 628, 742, 748, 757, 1440
BstMAI GTCTC 2 cut(s) 1188, 1326
BstMBI GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
BstMWI GCNNNNNNNGC 4 cut(s) 353, 505, 958, 1206
BstNI CCWGG 3 cut(s) 80, 872, 1381
BstSCI CCNGG 3 cut(s) 78, 870, 1379
BstSFI CTRYAG 1 cut(s) 1176
BstSLI GKGCMC 2 cut(s) 686, 1379
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 5 cut(s) 225, 582, 1012, 1159, 1374
BstX2I RGATCY 1 cut(s) 739
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 1 cut(s) 739
Bsu36I CCTNAGG 2 cut(s) 1274, 1592
BsuI GTATCC 2 cut(s) 650, 1504
BsuRI GGCC 3 cut(s) 444, 684, 995
BtgI CCRYGG 2 cut(s) 33, 276
BtsCI GGATG 6 cut(s) 100, 142, 199, 577, 616, 852
BtsIMutI CAGTG 2 cut(s) 848, 1566
Cac8I GCNNGC 1 cut(s) 950
CciI TCATGA 1 cut(s) 751
CfoI GCGC 2 cut(s) 152, 969
Cfr13I GGNCC 5 cut(s) 4, 273, 307, 682, 683
Cfr42I CCGCGG 1 cut(s) 36
CsiI ACCWGGT 1 cut(s) 870
CviAII CATG 4 cut(s) 277, 752, 1160, 1451
DdeI CTNAG 8 cut(s) 303, 840, 1274, 1362, 1486, 1515, 1541, 1592
DpnI GATC 6 cut(s) 384, 627, 741, 747, 756, 1439
DpnII GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
DraI TTTAAA 4 cut(s) 222, 771, 985, 1290
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 3 cut(s) 327, 1096, 1429
EarI CTCTTC 3 cut(s) 327, 1096, 1429
Ecl136II GAGCTC 1 cut(s) 1545
Eco130I CCWWGG 3 cut(s) 276, 357, 1080
Eco147I AGGCCT 1 cut(s) 995
Eco24I GRGCYC 2 cut(s) 686, 1547
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 3 cut(s) 4, 273, 307
Eco53kI GAGCTC 1 cut(s) 1545
Eco57I CTGAAG 3 cut(s) 428, 720, 1414
Eco81I CCTNAGG 2 cut(s) 1274, 1592
Eco88I CYCGRG 1 cut(s) 1201
EcoICRI GAGCTC 1 cut(s) 1545
EcoO109I RGGNCCY 3 cut(s) 307, 682, 683
EcoRI GAATTC 2 cut(s) 602, 933
EcoRII CCWGG 3 cut(s) 78, 870, 1379
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 3 cut(s) 276, 357, 1080
EcoT38I GRGCYC 2 cut(s) 686, 1547
ErhI CCWWGG 3 cut(s) 276, 357, 1080
FaeI CATG 4 cut(s) 280, 755, 1163, 1454
FaqI GGGAC 1 cut(s) 1292
FatI CATG 4 cut(s) 276, 751, 1159, 1450
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 5 cut(s) 214, 596, 1026, 1173, 1388
FokI GGATG 6 cut(s) 107, 149, 206, 584, 623, 839
FriOI GRGCYC 2 cut(s) 686, 1547
Fsp4HI GCNGC 5 cut(s) 214, 596, 1026, 1173, 1388
FspBI CTAG 3 cut(s) 270, 377, 1167
GlaI GCGC 2 cut(s) 151, 968
GluI GCNGC 5 cut(s) 214, 596, 1026, 1173, 1388
GsaI CCCAGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 444, 684, 995
HhaI GCGC 2 cut(s) 152, 969
Hin1II CATG 4 cut(s) 280, 755, 1163, 1454
Hin6I GCGC 2 cut(s) 150, 967
HinP1I GCGC 2 cut(s) 150, 967
HincII GTYRAC 2 cut(s) 40, 474
HindII GTYRAC 2 cut(s) 40, 474
HinfI GANTC 6 cut(s) 257, 1039, 1105, 1163, 1334, 1529
HpaI GTTAAC 1 cut(s) 474
HphI GGTGA 3 cut(s) 152, 697, 710
Hpy166II GTNNAC 3 cut(s) 40, 474, 705
Hpy188I TCNGA 3 cut(s) 739, 1038, 1100
Hpy188III TCNNGA 7 cut(s) 305, 421, 743, 752, 1193, 1460, 1508
Hpy8I GTNNAC 3 cut(s) 40, 474, 705
HpyAV CCTTC 7 cut(s) 36, 403, 660, 769, 1006, 1322, 1438
HpyCH4III ACNGT 1 cut(s) 1561
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 6 cut(s) 322, 508, 804, 846, 948, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 505, 958, 1206
HpyF3I CTNAG 8 cut(s) 303, 840, 1274, 1362, 1486, 1515, 1541, 1592
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 4 cut(s) 280, 755, 1163, 1454
HspAI GCGC 2 cut(s) 150, 967
Ksp22I TGATCA 1 cut(s) 754
KspAI GTTAAC 1 cut(s) 474
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 1090, 1395
Lsp1109I GCAGC 5 cut(s) 225, 582, 1012, 1159, 1374
LweI GCATC 4 cut(s) 85, 601, 658, 904
MabI ACCWGGT 1 cut(s) 870
MaeI CTAG 3 cut(s) 270, 377, 1167
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 2 cut(s) 1357, 1555
MalI GATC 6 cut(s) 384, 627, 741, 747, 756, 1439
MboI GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
MboII GAAGA 6 cut(s) 344, 436, 726, 1083, 1416, 1448
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 3 cut(s) 686, 1379, 1547
MlyI GAGTC 3 cut(s) 1099, 1328, 1538
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 80, 872, 1381
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 3 cut(s) 80, 872, 1381
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 353, 505, 958, 1206
NcoI CCATGG 1 cut(s) 276
NdeII GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
NlaIII CATG 4 cut(s) 280, 755, 1163, 1454
NlaIV GGNNCC 5 cut(s) 6, 683, 684, 685, 1086
PagI TCATGA 1 cut(s) 751
PceI AGGCCT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 257, 1039, 1163
PflMI CCANNNNNTGG 3 cut(s) 818, 1063, 1101
PkrI GCNGC 5 cut(s) 215, 597, 1027, 1174, 1389
PleI GAGTC 3 cut(s) 1099, 1328, 1537
PpsI GAGTC 3 cut(s) 1099, 1328, 1537
PpuMI RGGWCCY 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 1350
Psp124BI GAGCTC 1 cut(s) 1547
Psp1406I AACGTT 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 3 cut(s) 78, 870, 1379
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 78, 870, 1379
PspN4I GGNNCC 5 cut(s) 6, 683, 684, 685, 1086
PspOMI GGGCCC 1 cut(s) 682
PspPI GGNCC 5 cut(s) 4, 273, 307, 682, 683
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 1547
SacII CCGCGG 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 327
SatI GCNGC 5 cut(s) 214, 596, 1026, 1173, 1388
Sau3AI GATC 6 cut(s) 382, 625, 739, 745, 754, 1437
Sau96I GGNCC 5 cut(s) 4, 273, 307, 682, 683
SchI GAGTC 3 cut(s) 1099, 1328, 1538
ScrFI CCNGG 3 cut(s) 80, 872, 1381
SduI GDGCHC 3 cut(s) 686, 1379, 1547
SexAI ACCWGGT 1 cut(s) 870
SfaNI GCATC 4 cut(s) 85, 601, 658, 904
SfcI CTRYAG 1 cut(s) 1176
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 3 cut(s) 4, 273, 307
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SseBI AGGCCT 1 cut(s) 995
SsiI CCGC 2 cut(s) 33, 35
SspMI CTAG 3 cut(s) 270, 377, 1167
SstI GAGCTC 1 cut(s) 1547
StuI AGGCCT 1 cut(s) 995
StyD4I CCNGG 3 cut(s) 78, 870, 1379
StyI CCWWGG 3 cut(s) 276, 357, 1080
TaaI ACNGT 1 cut(s) 1561
TaiI ACGT 1 cut(s) 526
TaqI TCGA 5 cut(s) 385, 617, 1192, 1228, 1532
TfiI GAWTC 3 cut(s) 257, 1039, 1163
TscAI CASTG 2 cut(s) 848, 1566
TseI GCWGC 5 cut(s) 213, 595, 1025, 1172, 1387
TspDTI ATGAA 5 cut(s) 59, 201, 264, 566, 664
TspRI CASTG 2 cut(s) 848, 1566
Van91I CCANNNNNTGG 3 cut(s) 818, 1063, 1101
Vha464I CTTAAG 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 4, 273, 307
VspI ATTAAT 1 cut(s) 1350
XspI CTAG 3 cut(s) 270, 377, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.