RchiOBHm_Chr4g0397521

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000492
Physical Location & Seq
Reverse (-)
13913005 .. 13914108
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36980

Sequence Viewer

Length: 357 bp
ATGAGTAAAGCGTACAATCGTCTTGAATGGGTTTTCTTGGAGGCCATTATGTATCGATTGGGGTTCTGTGAGACTTGGGTGAAGTGGATTATGGACTGTGTTCGTACGGTTTCTTATGCTTTTATGGTTAATGGAGTGCCTAGAAGACGAATTATTCCCTCTAGAGGTATGCAATTTCACCATACCTTTTCCTCCTCTGTGATGAGACTTTATCAAGACTTATTATTCATGCCGAGCAGGCTGATCTACTCCATGGGGTTGAGATTTGTCAGGGGGCTCCTAGCATTAGTCATTTGTTCTTTGCAGATGATTCCTTTGTGTTCTTCAAGGCAGAACTGCGAGATTGCTTCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

118

Amino Acids

13.88

Weight (kDa)

9.78

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 14, 106
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 26, 327
Alw26I GTCTC 2 cut(s) 65, 199
AoxI GGCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 91, 170
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 65, 199
BfaI CTAG 3 cut(s) 141, 162, 281
BglI GCCNNNNNGGC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 151
Bsa29I ATCGAT 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 184
BshFI GGCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 55
BsiWI CGTACG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 65, 199
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 243
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 98, 109
BstC8I GCNNGC 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 252
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 2 cut(s) 65, 199
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 55
Csp6I GTAC 2 cut(s) 13, 105
CviAII CATG 2 cut(s) 229, 253
CviJI RGCY 3 cut(s) 44, 241, 277
CviKI_1 RGCY 3 cut(s) 44, 241, 277
CviQI GTAC 2 cut(s) 13, 105
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 232, 256
FaiI YATR 9 cut(s) 50, 92, 117, 125, 170, 183, 230, 254, 355
FatI CATG 2 cut(s) 228, 252
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 3 cut(s) 141, 162, 281
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 2 cut(s) 232, 256
HinfI GANTC 1 cut(s) 310
HphI GGTGA 2 cut(s) 91, 170
Hpy188III TCNNGA 3 cut(s) 23, 162, 215
HpyCH4III ACNGT 2 cut(s) 98, 109
HpyCH4V TGCA 2 cut(s) 172, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92II CATG 2 cut(s) 232, 256
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 2 cut(s) 223, 256
MaeI CTAG 3 cut(s) 141, 162, 281
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 156, 315
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 150, 173
MnlI CCTC 5 cut(s) 34, 158, 169, 202, 205
MseI TTAA 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 252
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 232, 256
NlaIV GGNNCC 1 cut(s) 278
NmeAIII GCCGAG 1 cut(s) 258
PfeI GAWTC 1 cut(s) 310
Pfl23II CGTACG 1 cut(s) 104
PspLI CGTACG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 14, 106
RsaNI GTAC 2 cut(s) 13, 105
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 279
SetI ASST 2 cut(s) 169, 188
Sse9I AATT 2 cut(s) 150, 173
SspMI CTAG 3 cut(s) 141, 162, 281
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 98, 109
TaqI TCGA 1 cut(s) 55
TasI AATT 2 cut(s) 150, 173
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 217
XbaI TCTAGA 1 cut(s) 161
XspI CTAG 3 cut(s) 141, 162, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.