RLG00000007836

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000492
Physical Location & Seq
Forward (+)
21754849 .. 21755296
448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007836

Sequence Viewer

Length: 372 bp
ATGCATGCTATGTTAACTAAACTGGGTTTTGTGCAAAAGTGGATACAGATGATTATGAATTGTGTTATTTCAGTTCAATATTCCATCTTAATTCATGGGGAACCTACTCCACAGATTATTTCTTCCAGAGGCATCAAGCAAGGTGACCCATTATCACCATACTTATTTATTTTATGCGCAAAAGGATTATCTATGTCGATCTCCAAAGCTGTTGATACAGGTGCCATTACCGGCCACACCATGTGCCCACAAGCACCTACTCTACATCATTTGTTTTTTGCAGATAATAGTTTCTTGTTTGGGACGGCTAATGAGGAGGAATGCTTCCATTATAGAAGAGTGCTGAATGTATCTGAAAAAGCTTCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

7.74

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 6 - 110 1.3e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 2 cut(s) 209, 362
AluI AGCT 2 cut(s) 209, 362
AoxI GGCC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 147, 155
BaeGI GKGCMC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 221
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 321
BciVI GTATCC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 102, 223
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 248
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 221
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 102, 223
BspT107I GGYRCC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 143
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 248
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 230
CviAII CATG 3 cut(s) 5, 95, 241
CviJI RGCY 4 cut(s) 209, 234, 308, 362
CviKI_1 RGCY 4 cut(s) 209, 234, 308, 362
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraIII CACNNNGTG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 98, 244
FaiI YATR 9 cut(s) 6, 11, 56, 96, 160, 175, 194, 242, 333
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 4, 94, 240
FspI TGCGCA 1 cut(s) 178
GlaI GCGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 8, 98, 244
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 360
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 147, 155
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 4, 34, 281
Hsp92II CATG 3 cut(s) 8, 98, 244
HspAI GCGC 1 cut(s) 177
KspAI GTTAAC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 5 cut(s) 8, 139, 204, 244, 351
LweI GCATC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 114, 348
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 58, 90
MnlI CCTC 3 cut(s) 122, 307, 310
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 14, 89
MspI CCGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 326
NdeII GATC 1 cut(s) 198
NlaIII CATG 3 cut(s) 8, 98, 244
NlaIV GGNNCC 2 cut(s) 102, 223
NmuCI GTSAC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 326
PspEI GGTNACC 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 102, 223
SaqAI TTAA 2 cut(s) 14, 89
Sau3AI GATC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 248
SetI ASST 7 cut(s) 106, 145, 211, 223, 259, 364, 370
SfaNI GCATC 1 cut(s) 141
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 58, 90
SspI AATATT 1 cut(s) 80
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 58, 90
Tru1I TTAA 2 cut(s) 14, 89
Tru9I TTAA 2 cut(s) 14, 89
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 71, 83
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.