Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009189

Physical Location & Seq

Genomic Coordinates Reverse (-)

14187914 .. 14190278

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGTACTTCTACTACAGAGAGTGTGGTGGCGTGTGAATTTTGCGGCGAGAGAACGGCGGTTCTGTTTTGTAGAGCCGATACGGCGAAGCTTTGTTTGCCTTGTGACCAGCACGTGCACTCGGCGAACCTTCTCTCGAGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGCAAAGAGCCGGTGTCCGTACGTTGCTTCACAGATAATCTCGTATTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCCTCCTCCGCGACGCATGAACGCTCCGCCGTGGAAGGGTTTTCAGGTTGTCCTTCGGTTTTGGAGCTTGCTGCTGTGTGGGGAATCGATTTAAAGGGTAAGAAGAAAGAAGATGACGAAGACGAATTGACTAAGAATTTTGGGATGGGGTTGGATTCGTGGGGTTCTGGATCTAACATCGTTCAAGAACTGATTGTTCCTTATGATGTGTCTTGCAAAAAGCAAAGCTTTAGCTTTGGGAGGTCTAAGCAGGTAGTGTTTGAACAGCTTGAGTTACTGAAGAGAGGCTTCGTTGAAGGCGAAGGAGAGATTATGGTTCCGGAGGGAATCAATGGCGGAGGAAGCATTTCTCAGCCATCTCCGACGACGTCGTTTACTTCTTTGCTTATGTCTCAAAGTCTTTGTGGTAATGGTATGCAATGGAATGCTACTAATCATAGCACTGGCCAGAACACTCAGATATGGGATTTTAACTTGGGACAGTCGAGGAACCCTGATGAACCTAGTCCAGTCGAAACTAAAGGCTCTACTTTCACATTCAACAACGTTACTCATCTCAAGAACGATACCCGAACCACCAATATGAATGCTTTCAAAGAGAGTTACCAGCAGGAGGATTCCGTCCACTCAACTTCTACCAAGGGACAGGAAACATCTAAGAGCAACAATATTCCTGCTGCCATTCACTCGCATAAAAGTTCTAACGACTCCTGTGGCTTGCATTGCACGGAACATATTGCTATTACTAGTAATAGAGCCACAAGATTGGTGGCGGTAACGAATGCTGATCTAGAGCAGATGGCACAGAACAGAGATAATGCTATGCAGCGGTACAAGGAAAAGAAGAAAACGCGGAGATATGATAAGACCATAAGATATGAAACGAGGAAGGCGAGAGCCGAGACCAGGTTGCGTGTTAAGGGCAGATTTGTGAAAGCTACAGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

402

Amino Acids

44.52

Weight (kDa)

6.86

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	356 - 398	1.6e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28050 AT2G33500 AT2G33500
fragaria_vesca	FvH4_4g23090 FvH4_7g05191
malus_domestica	MD13G1125800.v1.1 MD16G1126400.v1.1
prunus_persica	Prupe.1G219800_v2.0.a1
pyrus_communis	pycom13g10970 pycom16g10750
rosa_chinensis	RchiOBHm_Chr4g0429371
rosa_laevigata	RLG00000007077
rosa_multiflora	Rmu_co8397147.1_g000001 Rmu_sc0003708.1_g000044
rosa_roxburghii	Rroxscaffold_5G00370980
rosa_rugosa	Rorug04G0235200 Rorug04G0235300
rosa_samantha	Rh4AG291200 Rh4BG297000 Rh4CG312500 Rh4DG293900
rosa_wichuraiana	Rw4G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	499
AccII	CGCG	2 cut(s)	269, 1111
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	8 cut(s)	45, 59, 267, 285, 594, 1031, 1087, 1111
AclI	AACGTT	1 cut(s)	804
AclWI	GGATC	2 cut(s)	436, 1196
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	2 cut(s)	38, 394
AcuI	CTGAAG	1 cut(s)	557
AcvI	CACGTG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	3 cut(s)	7, 195, 1091
AfiI	CCNNNNNNNGG	3 cut(s)	294, 871, 1164
AgsI	TTSAA	5 cut(s)	443, 521, 554, 799, 853
AhlI	ACTAGT	1 cut(s)	1004
AjnI	CCWGG	1 cut(s)	1163
AluBI	AGCT	7 cut(s)	91, 255, 325, 486, 492, 526, 1196
AluI	AGCT	7 cut(s)	91, 255, 325, 486, 492, 526, 1196
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	654, 1154
Alw44I	GTGCAC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	436, 1196
Ama87I	CYCGRG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	1 cut(s)	703
ApaLI	GTGCAC	1 cut(s)	116
ApeKI	GCWGC	3 cut(s)	329, 935, 1084
ApoI	RAATTY	2 cut(s)	38, 394
Asp700I	GAANNNNTTC	3 cut(s)	256, 604, 848
AvaI	CYCGRG	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	705
BbrPI	CACGTG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	316, 922, 1096
BccI	CCATC	3 cut(s)	397, 622, 1051
BceAI	ACGGC	3 cut(s)	72, 99, 272
BciT130I	CCWGG	1 cut(s)	1165
BcoDI	GTCTC	2 cut(s)	654, 1154
BcuI	ACTAGT	1 cut(s)	1004
BfaI	CTAG	3 cut(s)	762, 1005, 1049
BfmI	CTRYAG	3 cut(s)	15, 172, 1197
BfuAI	ACCTGC	1 cut(s)	499
BglI	GCCNNNNNGGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	46, 330, 936, 1085
BlsI	GCNGC	4 cut(s)	47, 331, 937, 1086
Bme1390I	CCNGG	1 cut(s)	1165
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	576, 749
BmrFI	CCNGG	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	548, 800
Bsa29I	ATCGAT	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	2 cut(s)	288, 897
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 871, 1164
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	706, 767
Bse3DI	GCAATG	2 cut(s)	683, 979
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	1165
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	288, 897
BseGI	GGATG	2 cut(s)	247, 408
BseLI	CCNNNNNNNGG	3 cut(s)	294, 871, 1164
BseMI	GCAATG	2 cut(s)	683, 979
BseMII	CTCAG	3 cut(s)	170, 623, 728
BseNI	ACTGG	2 cut(s)	706, 767
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	316, 922, 1096
Bsh1236I	CGCG	2 cut(s)	269, 1111
BshFI	GGCC	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	185, 578
BsiWI	CGTACG	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	750, 915
BslI	CCNNNNNNNGG	3 cut(s)	294, 871, 1164
BsmAI	GTCTC	2 cut(s)	654, 1154
BsmFI	GGGAC	2 cut(s)	750, 915
BsmI	GAATGC	3 cut(s)	688, 850, 1045
BsnI	GGCC	1 cut(s)	705
Bso31I	GGTCTC	1 cut(s)	1154
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	159, 428, 1045, 1201
BspACI	CCGC	8 cut(s)	45, 59, 267, 285, 594, 1031, 1087, 1111
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	169, 622, 727
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	269, 1111
BspLI	GGNNCC	2 cut(s)	576, 749
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	2 cut(s)	436, 1196
BspTNI	GGTCTC	1 cut(s)	1154
BsrDI	GCAATG	2 cut(s)	683, 979
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	706, 767
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	288, 897
BssMI	GATC	4 cut(s)	159, 428, 1045, 1201
BssNI	GRCGYC	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	1165
Bst4CI	ACNGT	2 cut(s)	173, 741
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	327, 977
BstDEI	CTNAG	7 cut(s)	156, 390, 504, 609, 714, 915, 1206
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	247, 408
BstFNI	CGCG	2 cut(s)	269, 1111
BstKTI	GATC	4 cut(s)	162, 431, 1048, 1204
BstMAI	GTCTC	2 cut(s)	654, 1154
BstMBI	GATC	4 cut(s)	159, 428, 1045, 1201
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 97, 600, 981
BstNI	CCWGG	1 cut(s)	1165
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	1163
BstSFI	CTRYAG	3 cut(s)	15, 172, 1197
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	269, 1111
BstV1I	GCAGC	3 cut(s)	316, 922, 1096
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	3 cut(s)	159, 428, 1201
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	3 cut(s)	159, 428, 1201
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	247, 408
BtsIMutI	CAGTG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	327, 977
Cfr10I	RCCGGY	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	1163
Csp6I	GTAC	3 cut(s)	6, 194, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	1008, 1043
CviAII	CATG	2 cut(s)	146, 275
CviQI	GTAC	3 cut(s)	6, 194, 1090
DdeI	CTNAG	7 cut(s)	156, 390, 504, 609, 714, 915, 1206
DpnI	GATC	4 cut(s)	161, 430, 1047, 1203
DpnII	GATC	4 cut(s)	159, 428, 1045, 1201
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	2 cut(s)	274, 609
Eco130I	CCWWGG	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	1154
Eco57I	CTGAAG	1 cut(s)	557
Eco72I	CACGTG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	1163
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	2 cut(s)	149, 278
FalI	AAGNNNNNCTT	4 cut(s)	470, 502, 530, 562
FaqI	GGGAC	2 cut(s)	750, 915
FatI	CATG	2 cut(s)	145, 274
Fnu4HI	GCNGC	4 cut(s)	46, 330, 936, 1085
FokI	GGATG	2 cut(s)	254, 415
Fsp4HI	GCNGC	4 cut(s)	46, 330, 936, 1085
FspBI	CTAG	3 cut(s)	762, 1005, 1049
GluI	GCNGC	4 cut(s)	46, 330, 936, 1085
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	2 cut(s)	185, 578
HgaI	GACGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	2 cut(s)	149, 278
HindIII	AAGCTT	2 cut(s)	89, 484
HinfI	GANTC	5 cut(s)	342, 413, 585, 875, 965
HpaII	CCGG	2 cut(s)	185, 578
Hpy166II	GTNNAC	4 cut(s)	118, 247, 633, 883
Hpy188I	TCNGA	3 cut(s)	159, 621, 717
Hpy188III	TCNNGA	7 cut(s)	136, 227, 426, 443, 578, 817, 1049
Hpy8I	GTNNAC	4 cut(s)	118, 247, 633, 883
Hpy99I	CGWCG	4 cut(s)	274, 625, 628, 631
HpyAV	CCTTC	6 cut(s)	140, 287, 321, 548, 554, 1141
HpyCH4III	ACNGT	2 cut(s)	173, 741
HpyCH4IV	ACGT	4 cut(s)	114, 196, 626, 804
HpyCH4V	TGCA	6 cut(s)	118, 474, 676, 979, 984, 1084
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 97, 600, 981
HpyF3I	CTNAG	7 cut(s)	156, 390, 504, 609, 714, 915, 1206
HpySE526I	ACGT	4 cut(s)	114, 196, 626, 804
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	2 cut(s)	149, 278
Kpn2I	TCCGGA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	159, 428, 1045, 1201
LmnI	GCTCC	2 cut(s)	287, 322
Lsp1109I	GCAGC	3 cut(s)	316, 922, 1096
MabI	ACCWGGT	1 cut(s)	1163
MaeI	CTAG	3 cut(s)	762, 1005, 1049
MaeII	ACGT	4 cut(s)	114, 196, 626, 804
MaeIII	GTNAC	5 cut(s)	104, 531, 805, 860, 1033
MalI	GATC	4 cut(s)	161, 430, 1047, 1203
MboI	GATC	4 cut(s)	159, 428, 1045, 1201
MboII	GAAGA	5 cut(s)	373, 380, 389, 550, 1114
MflI	RGATCY	3 cut(s)	159, 428, 1201
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	3 cut(s)	38, 383, 394
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	959
MmeI	TCCRAC	2 cut(s)	390, 644
Mox20I	TGGCCA	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	577
MroXI	GAANNNNTTC	3 cut(s)	256, 604, 848
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	350, 729, 1176
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	1087
MspI	CCGG	2 cut(s)	185, 578
MspR9I	CCNGG	1 cut(s)	1165
Mva1269I	GAATGC	3 cut(s)	688, 850, 1045
MvaI	CCWGG	1 cut(s)	1165
MvnI	CGCG	2 cut(s)	269, 1111
MwoI	GCNNNNNNNGC	4 cut(s)	83, 97, 600, 981
NdeII	GATC	4 cut(s)	159, 428, 1045, 1201
NlaIII	CATG	2 cut(s)	149, 278
NlaIV	GGNNCC	2 cut(s)	576, 749
NmeAIII	GCCGAG	2 cut(s)	101, 1183
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	555, 1148
PctI	GAATGC	3 cut(s)	688, 850, 1045
PdmI	GAANNNNTTC	3 cut(s)	256, 604, 848
PfeI	GAWTC	4 cut(s)	342, 413, 585, 875
Pfl23II	CGTACG	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	47, 331, 937, 1086
PleI	GAGTC	1 cut(s)	959
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	959
Ppu21I	YACGTR	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	1163
PspCI	CACGTG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	1163
PspLI	CGTACG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	576, 749
PsuI	RGATCY	3 cut(s)	159, 428, 1201
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	3 cut(s)	7, 195, 1091
RsaNI	GTAC	3 cut(s)	6, 194, 1090
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	3 cut(s)	350, 729, 1176
SatI	GCNGC	4 cut(s)	46, 330, 936, 1085
Sau3AI	GATC	4 cut(s)	159, 428, 1045, 1201
SchI	GAGTC	1 cut(s)	959
ScrFI	CCNGG	1 cut(s)	1165
SduI	GDGCHC	1 cut(s)	120
SexAI	ACCWGGT	1 cut(s)	1163
SfcI	CTRYAG	3 cut(s)	15, 172, 1197
Sfr274I	CTCGAG	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	3 cut(s)	136, 527, 815
SmoI	CTYRAG	3 cut(s)	136, 527, 815
SpeI	ACTAGT	1 cut(s)	1004
Sse9I	AATT	3 cut(s)	38, 383, 394
SsiI	CCGC	8 cut(s)	45, 59, 267, 285, 594, 1031, 1087, 1111
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	3 cut(s)	762, 1005, 1049
StyD4I	CCNGG	1 cut(s)	1163
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	173, 741
TaiI	ACGT	4 cut(s)	117, 199, 629, 807
TaqI	TCGA	4 cut(s)	137, 345, 743, 771
TasI	AATT	3 cut(s)	38, 383, 394
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	342, 413, 585, 875
Tru1I	TTAA	3 cut(s)	350, 729, 1176
Tru9I	TTAA	3 cut(s)	350, 729, 1176
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	329, 935, 1084
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	291, 771, 857, 1152
TspGWI	ACGGA	4 cut(s)	181, 264, 868, 1001
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	625
VneI	GTGCAC	1 cut(s)	116
XapI	RAATTY	2 cut(s)	38, 394
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1024
XhoI	CTCGAG	1 cut(s)	136
XmnI	GAANNNNTTC	3 cut(s)	256, 604, 848
XspI	CTAG	3 cut(s)	762, 1005, 1049
ZraI	GACGTC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.