Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009189

Physical Location & Seq

Genomic Coordinates Reverse (-)

5545688 .. 5546831

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTGGCATACAAGCTCCGACCACATGTTCGGCGGCAGCCCCTCCTCCCTATCGCTCGACGATGCCGGAAAACCAGCTCAAGCGCCGCCACTGTGAACACCCAGAAATGGCGAAGCTGTGCTTGTTCTGCGACCGACAACTTGGTCCTCTGCCAGGACTGCGACTGGGATGCCCACGACAATTGCTCAGTCTCCGCCGCACACGATCGCACCTCGGTCAAGGGCTTCGACGGCTGCCCCACGCTGTTGGAGCTCGCCAAGATTTGGGGGATAGATCTCCGCAAGAGTCCGAGTCGGGTCAACGACCCGGACCGCTGGGGGGAGATGGACTCGTCGTGGAATGGGGTGAACTTCCAGGACCTGATTGTGTTGAGCCAGAACGGCGGTGTACCGGAGCTCCGGGGAGGCGGCTCTAGCGAAGAGGCAGGGCTCTGGTGGGAGCTTGGGGAAGCACAAGCAAGGGAAAACCAGCTCAAGCTGGGTGTCCATATATGGGTTCCCATAGCAGTTTCTGAGTGTTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

6.41

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28050 AT2G33500 AT2G33500
fragaria_vesca	FvH4_4g23090 FvH4_7g05191
malus_domestica	MD13G1125800.v1.1 MD16G1126400.v1.1
prunus_persica	Prupe.1G219800_v2.0.a1
pyrus_communis	pycom13g10970 pycom16g10750
rosa_chinensis	RchiOBHm_Chr4g0429371
rosa_laevigata	RLG00000007077
rosa_multiflora	Rmu_co8397147.1_g000001 Rmu_sc0003708.1_g000044
rosa_roxburghii	Rroxscaffold_5G00370980
rosa_rugosa	Rorug04G0235200 Rorug04G0235300
rosa_samantha	Rh4AG291200 Rh4BG297000 Rh4CG312500 Rh4DG293900
rosa_wichuraiana	Rw4G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	8 cut(s)	34, 87, 195, 198, 280, 313, 384, 408
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	5 cut(s)	108, 154, 264, 319, 493
AflIII	ACRYGT	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	153, 354
AluBI	AGCT	8 cut(s)	16, 78, 117, 253, 397, 442, 472, 478
AluI	AGCT	8 cut(s)	16, 78, 117, 253, 397, 442, 472, 478
Alw21I	GWGCWC	2 cut(s)	255, 399
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	2 cut(s)	361, 512
ApeKI	GCWGC	2 cut(s)	37, 234
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	145, 310, 358
AsuC2I	CCSGG	2 cut(s)	308, 401
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	3 cut(s)	145, 310, 358
BanII	GRGCYC	3 cut(s)	255, 399, 432
Bbv12I	GWGCWC	2 cut(s)	255, 399
BbvI	GCAGC	2 cut(s)	49, 221
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	2 cut(s)	247, 397
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	2 cut(s)	155, 356
BcnI	CCSGG	2 cut(s)	308, 401
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	6 cut(s)	35, 38, 87, 198, 235, 409
BlsI	GCNGC	6 cut(s)	36, 39, 88, 199, 236, 410
Bme1390I	CCNGG	4 cut(s)	155, 308, 356, 401
Bme18I	GGWCC	3 cut(s)	145, 310, 358
BmgT120I	GGNCC	3 cut(s)	145, 310, 358
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	4 cut(s)	155, 308, 356, 401
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	53, 160
BmuI	ACTGGG	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	2 cut(s)	64, 458
BpuMI	CCSGG	2 cut(s)	308, 401
BsaJI	CCNNGG	2 cut(s)	213, 400
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 154, 264, 319, 493
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	155, 356
BseDI	CCNNGG	2 cut(s)	213, 400
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	5 cut(s)	108, 154, 264, 319, 493
BseMII	CTCAG	2 cut(s)	201, 504
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	49, 221
BseYI	CCCAGC	2 cut(s)	315, 478
Bsh1285I	CGRYCG	2 cut(s)	135, 208
BsiEI	CGRYCG	2 cut(s)	135, 208
BsiHKAI	GWGCWC	2 cut(s)	255, 399
BsiSI	CCGG	4 cut(s)	67, 308, 392, 400
BslI	CCNNNNNNNGG	5 cut(s)	108, 154, 264, 319, 493
BsmAI	GTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	255, 399, 432
Bsp143I	GATC	2 cut(s)	205, 274
BspACI	CCGC	8 cut(s)	34, 87, 195, 198, 280, 313, 384, 408
BspCNI	CTCAG	2 cut(s)	200, 505
BspLI	GGNNCC	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	213, 400
BssMI	GATC	2 cut(s)	205, 274
Bst2UI	CCWGG	2 cut(s)	155, 356
Bst4CI	ACNGT	2 cut(s)	94, 525
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	187, 513
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	208, 277
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	205, 274
BstMCI	CGRYCG	2 cut(s)	135, 208
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 159, 231, 250, 381, 414
BstNI	CCWGG	2 cut(s)	155, 356
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	153, 306, 354, 399
BstV1I	GCAGC	2 cut(s)	49, 221
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	2 cut(s)	361, 512
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	145, 310, 358
CpoI	CGGWCCG	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	389
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CspI	CGGWCCG	1 cut(s)	310
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	187, 513
DpnI	GATC	2 cut(s)	207, 276
DpnII	GATC	2 cut(s)	205, 274
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	2 cut(s)	253, 397
Eco24I	GRGCYC	3 cut(s)	255, 399, 432
Eco47I	GGWCC	3 cut(s)	145, 310, 358
Eco53kI	GAGCTC	2 cut(s)	253, 397
EcoICRI	GAGCTC	2 cut(s)	253, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	153, 354
EcoT38I	GRGCYC	3 cut(s)	255, 399, 432
FaeI	CATG	1 cut(s)	29
FaiI	YATR	6 cut(s)	10, 27, 489, 491, 493, 503
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	6 cut(s)	35, 38, 87, 198, 235, 409
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	3 cut(s)	255, 399, 432
Fsp4HI	GCNGC	6 cut(s)	35, 38, 87, 198, 235, 409
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	6 cut(s)	35, 38, 87, 198, 235, 409
GsaI	CCCAGC	2 cut(s)	319, 482
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	4 cut(s)	67, 308, 392, 400
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	286, 292, 329
HpaII	CCGG	4 cut(s)	67, 308, 392, 400
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	5 cut(s)	97, 301, 349, 389, 521
Hpy188I	TCNGA	3 cut(s)	20, 291, 514
Hpy8I	GTNNAC	5 cut(s)	97, 301, 349, 389, 521
Hpy99I	CGWCG	3 cut(s)	63, 233, 337
HpyCH4III	ACNGT	2 cut(s)	94, 525
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 159, 231, 250, 381, 414
HpyF3I	CTNAG	2 cut(s)	187, 513
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	205, 274
LmnI	GCTCC	5 cut(s)	21, 250, 394, 402, 439
Lsp1109I	GCAGC	2 cut(s)	49, 221
LweI	GCATC	2 cut(s)	53, 160
MaeI	CTAG	1 cut(s)	414
MalI	GATC	2 cut(s)	207, 276
MboI	GATC	2 cut(s)	205, 274
MboII	GAAGA	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	3 cut(s)	255, 399, 432
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	3 cut(s)	295, 301, 323
MmeI	TCCRAC	2 cut(s)	43, 228
MnlI	CCTC	6 cut(s)	53, 56, 158, 223, 398, 415
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	4 cut(s)	67, 308, 392, 400
MspR9I	CCNGG	4 cut(s)	155, 308, 356, 401
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	155, 356
MwoI	GCNNNNNNNGC	6 cut(s)	128, 159, 231, 250, 381, 414
NciI	CCSGG	2 cut(s)	308, 401
NdeII	GATC	2 cut(s)	205, 274
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	498
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	6 cut(s)	36, 39, 88, 199, 236, 410
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	3 cut(s)	294, 300, 323
PpsI	GAGTC	3 cut(s)	294, 300, 323
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	25
Psp124BI	GAGCTC	2 cut(s)	255, 399
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	153, 354
PspFI	CCCAGC	2 cut(s)	315, 478
PspGI	CCWGG	2 cut(s)	153, 354
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	145, 310, 358
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	2 cut(s)	361, 512
PsuI	RGATCY	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
Rsr2I	CGGWCCG	1 cut(s)	310
RsrII	CGGWCCG	1 cut(s)	310
SacI	GAGCTC	2 cut(s)	255, 399
SatI	GCNGC	6 cut(s)	35, 38, 87, 198, 235, 409
Sau3AI	GATC	2 cut(s)	205, 274
Sau96I	GGNCC	3 cut(s)	145, 310, 358
SchI	GAGTC	3 cut(s)	295, 301, 323
ScrFI	CCNGG	4 cut(s)	155, 308, 356, 401
SduI	GDGCHC	3 cut(s)	255, 399, 432
SfaNI	GCATC	2 cut(s)	53, 160
SinI	GGWCC	3 cut(s)	145, 310, 358
SmlI	CTYRAG	2 cut(s)	79, 473
SmoI	CTYRAG	2 cut(s)	79, 473
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	8 cut(s)	34, 87, 195, 198, 280, 313, 384, 408
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	2 cut(s)	255, 399
StyD4I	CCNGG	4 cut(s)	153, 306, 354, 399
TaaI	ACNGT	2 cut(s)	94, 525
TaqI	TCGA	2 cut(s)	58, 228
TaqII	GACCGA	2 cut(s)	149, 205
TasI	AATT	1 cut(s)	181
TauI	GCSGC	4 cut(s)	37, 89, 200, 411
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	37, 234
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	3 cut(s)	145, 310, 358
XagI	CCTNNNNNAGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.