Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397147.1

Orthogroup ID

OG0009189

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1172

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397147.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggtgagttcgaaaccggcgaccgccggagagagtattccctgcgatttctgcagcgagcagccggcggtgctctactgtaaggccgactcggccaagctgtgcttgttctgcgaccagcacgtgcacggcgccaacttgctgtccaggaagcacgtgcggtcccagatctgcgacaactgcgcctccgacgccgtcgccttccggtgctccaccgacaacttggtcctctgccacgagtgcgactgggacgcccacggcagctgctccgtctccgccgcacacgatcgcaccccgatcgagggcttctccggctgcccctcgccgctcgagctcgccgccctctgggggctagatctccacaagaatattccgggtcgggtcggcggaggcggcgacccggtggacccgacccggaactgggagctggagtcgtcgtggagcggggtgaacttccaggacctgatcgtgccgagccagaacggcgaggtgtaccggaactgcggggagtcggctccggctaagagacagggatccgggggcagcttggggaagtataagcaggggattcagaagcagctggtggagctgctcaagagggatttcgacggcggcggagagaatctggagccggcggcggcggagggaaatgataatgggagtaataatgttaatgttaatgttaatgtgaatgtgaatgcggaagggtttgatgtggagaatggaagagttgatggggtgaatgtaggttctgttgccgtttcgcagccgttgttgcagcaacaagcgccgttcacgtcgctgctgatgatggccgaaggcattgttgaccgagatatgttgtgggataccaacccccatggccacaacactcaaggcacacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

295

Amino Acids

31.46

Weight (kDa)

4.84

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28050 AT2G33500 AT2G33500
fragaria_vesca	FvH4_4g23090 FvH4_7g05191
malus_domestica	MD13G1125800.v1.1 MD16G1126400.v1.1
prunus_persica	Prupe.1G219800_v2.0.a1
pyrus_communis	pycom13g10970 pycom16g10750
rosa_chinensis	RchiOBHm_Chr4g0429371
rosa_laevigata	RLG00000007077
rosa_multiflora	Rmu_co8397147.1_g000001 Rmu_sc0003708.1_g000044
rosa_roxburghii	Rroxscaffold_5G00370980
rosa_rugosa	Rorug04G0235200 Rorug04G0235300
rosa_samantha	Rh4AG291200 Rh4BG297000 Rh4CG312500 Rh4DG293900
rosa_wichuraiana	Rw4G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	131
AccBSI	CCGCTC	2 cut(s)	328, 444
AclWI	GGATC	2 cut(s)	528, 541
AcoI	YGGCCR	3 cut(s)	93, 813, 862
AcvI	CACGTG	2 cut(s)	124, 157
AcyI	GRCGYC	3 cut(s)	132, 192, 252
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	6 cut(s)	301, 302, 345, 348, 420, 421
AjiI	CACGTC	1 cut(s)	798
AjnI	CCWGG	2 cut(s)	146, 456
AluBI	AGCT	7 cut(s)	100, 264, 334, 427, 546, 580, 589
AluI	AGCT	7 cut(s)	100, 264, 334, 427, 546, 580, 589
Alw21I	GWGCWC	4 cut(s)	75, 129, 212, 336
Alw26I	GTCTC	2 cut(s)	277, 520
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	528, 541
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	4 cut(s)	84, 93, 813, 862
ApaLI	GTGCAC	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	134, 185, 790
AspS9I	GGNCC	4 cut(s)	162, 226, 406, 460
AsuC2I	CCSGG	4 cut(s)	375, 401, 415, 538
AsuHPI	GGTGA	3 cut(s)	16, 460, 751
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	4 cut(s)	162, 226, 406, 460
BaeGI	GKGCMC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	236
BbrPI	CACGTG	2 cut(s)	124, 157
Bbv12I	GWGCWC	4 cut(s)	75, 129, 212, 336
BccI	CCATC	2 cut(s)	728, 805
BceAI	ACGGC	8 cut(s)	145, 179, 274, 499, 625, 743, 754, 775
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	2 cut(s)	148, 458
BciVI	GTATCC	1 cut(s)	841
BcnI	CCSGG	4 cut(s)	375, 401, 415, 538
BcoDI	GTCTC	2 cut(s)	277, 520
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	2 cut(s)	135, 791
BfuI	GTATCC	1 cut(s)	841
BglI	GCCNNNNNGGC	2 cut(s)	92, 483
BglII	AGATCT	2 cut(s)	168, 355
Bme1390I	CCNGG	6 cut(s)	148, 375, 401, 415, 458, 538
Bme18I	GGWCC	4 cut(s)	162, 226, 406, 460
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	798
BmgT120I	GGNCC	4 cut(s)	162, 226, 406, 460
BmiI	GGNNCC	6 cut(s)	133, 164, 408, 516, 535, 630
BmrFI	CCNGG	6 cut(s)	148, 375, 401, 415, 458, 538
BmrI	ACTGGG	2 cut(s)	256, 430
BmuI	ACTGGG	2 cut(s)	256, 430
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	2 cut(s)	449, 647
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	578, 858
BpuMI	CCSGG	4 cut(s)	375, 401, 415, 538
BsaAI	YACGTR	2 cut(s)	124, 157
BsaHI	GRCGYC	3 cut(s)	132, 192, 252
BsaJI	CCNNGG	3 cut(s)	256, 537, 859
BsaWI	WCCGGW	2 cut(s)	204, 495
BsaXI	ACNNNNNCTCC	6 cut(s)	170, 200, 416, 422, 446, 452
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 302, 345, 348, 420, 421
Bse118I	RCCGGY	3 cut(s)	16, 64, 631
Bse1I	ACTGG	2 cut(s)	251, 425
BseBI	CCWGG	2 cut(s)	148, 458
BseDI	CCNNGG	3 cut(s)	256, 537, 859
BseLI	CCNNNNNNNGG	6 cut(s)	301, 302, 345, 348, 420, 421
BseNI	ACTGG	2 cut(s)	251, 425
BseSI	GKGCMC	1 cut(s)	129
Bsh1285I	CGRYCG	3 cut(s)	24, 289, 300
BshFI	GGCC	4 cut(s)	86, 95, 815, 864
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	3 cut(s)	24, 289, 300
BsiHKAI	GWGCWC	4 cut(s)	75, 129, 212, 336
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	148, 263
BslI	CCNNNNNNNGG	6 cut(s)	301, 302, 345, 348, 420, 421
BsmAI	GTCTC	2 cut(s)	277, 520
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	148, 263
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	86, 95, 815, 864
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	4 cut(s)	75, 129, 212, 336
Bsp143I	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
Bsp19I	CCATGG	1 cut(s)	859
BspANI	GGCC	4 cut(s)	86, 95, 815, 864
BspLI	GGNNCC	6 cut(s)	133, 164, 408, 516, 535, 630
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	528, 541
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	2 cut(s)	328, 444
BsrFI	RCCGGY	3 cut(s)	16, 64, 631
BsrI	ACTGG	2 cut(s)	251, 425
BssAI	RCCGGY	3 cut(s)	16, 64, 631
BssECI	CCNNGG	3 cut(s)	256, 537, 859
BssMI	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
BssNI	GRCGYC	3 cut(s)	132, 192, 252
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	859
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	148, 458
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	721
BstACI	GRCGYC	3 cut(s)	132, 192, 252
BstBAI	YACGTR	2 cut(s)	124, 157
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	59, 66, 336, 633
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	2 cut(s)	256, 859
BstH2I	RGCGCY	2 cut(s)	135, 791
BstHHI	GCGC	3 cut(s)	134, 185, 790
BstKTI	GATC	6 cut(s)	171, 289, 300, 358, 468, 536
BstMAI	GTCTC	2 cut(s)	277, 520
BstMBI	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
BstMCI	CGRYCG	3 cut(s)	24, 289, 300
BstNI	CCWGG	2 cut(s)	148, 458
BstSCI	CCNGG	6 cut(s)	146, 373, 399, 413, 456, 536
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	168, 355, 533
BstYI	RGATCY	3 cut(s)	168, 355, 533
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	4 cut(s)	86, 95, 815, 864
BtgI	CCRYGG	2 cut(s)	256, 859
BtrI	CACGTC	1 cut(s)	798
Cac8I	GCNNGC	4 cut(s)	59, 66, 336, 633
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	3 cut(s)	134, 185, 790
Cfr10I	RCCGGY	3 cut(s)	16, 64, 631
Cfr13I	GGNCC	4 cut(s)	162, 226, 406, 460
CseI	GACGC	2 cut(s)	200, 260
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	522
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	6 cut(s)	170, 288, 299, 357, 467, 535
DpnII	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	3 cut(s)	93, 813, 862
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
EciI	GGCGGA	4 cut(s)	265, 402, 630, 656
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	859
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	4 cut(s)	162, 226, 406, 460
Eco53kI	GAGCTC	1 cut(s)	334
Eco72I	CACGTG	2 cut(s)	124, 157
Eco88I	CYCGRG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	146, 456
EcoT14I	CCWWGG	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	859
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	863
FaiI	YATR	3 cut(s)	558, 839, 861
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	2 cut(s)	148, 263
FatI	CATG	1 cut(s)	859
FauI	CCCGC	2 cut(s)	437, 497
FriOI	GRGCYC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	3 cut(s)	133, 184, 789
GsuI	CTGGAG	2 cut(s)	449, 647
HaeII	RGCGCY	2 cut(s)	135, 791
HaeIII	GGCC	4 cut(s)	86, 95, 815, 864
HgaI	GACGC	2 cut(s)	200, 260
HhaI	GCGC	3 cut(s)	134, 185, 790
Hin1I	GRCGYC	3 cut(s)	132, 192, 252
Hin1II	CATG	1 cut(s)	863
Hin6I	GCGC	3 cut(s)	132, 183, 788
HinP1I	GCGC	3 cut(s)	132, 183, 788
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	5 cut(s)	89, 431, 509, 568, 622
HphI	GGTGA	3 cut(s)	16, 460, 751
Hpy166II	GTNNAC	6 cut(s)	127, 406, 451, 493, 795, 829
Hpy188I	TCNGA	2 cut(s)	190, 573
Hpy188III	TCNNGA	2 cut(s)	595, 626
Hpy8I	GTNNAC	6 cut(s)	127, 406, 451, 493, 795, 829
Hpy99I	CGWCG	5 cut(s)	194, 200, 439, 611, 802
HpyAV	CCTTC	3 cut(s)	211, 698, 812
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	3 cut(s)	123, 156, 797
HpyCH4V	TGCA	3 cut(s)	54, 127, 778
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	3 cut(s)	123, 156, 797
Hsp92I	GRCGYC	3 cut(s)	132, 192, 252
Hsp92II	CATG	1 cut(s)	863
HspAI	GCGC	3 cut(s)	132, 183, 788
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	2 cut(s)	64, 631
KroNI	GCCGGC	2 cut(s)	66, 633
Kzo9I	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
LmnI	GCTCC	7 cut(s)	215, 272, 424, 441, 520, 586, 628
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	3 cut(s)	123, 156, 797
MalI	GATC	6 cut(s)	170, 288, 299, 357, 467, 535
MbiI	CCGCTC	2 cut(s)	328, 444
MboI	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
MboII	GAAGA	1 cut(s)	738
MflI	RGATCY	3 cut(s)	168, 355, 533
MhlI	GDGCHC	4 cut(s)	75, 129, 212, 336
MlsI	TGGCCA	1 cut(s)	864
MluNI	TGGCCA	1 cut(s)	864
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	83, 440, 518
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	196, 239, 295, 331, 353, 383, 481, 591, 637
Mox20I	TGGCCA	1 cut(s)	864
MroNI	GCCGGC	2 cut(s)	64, 631
MscI	TGGCCA	1 cut(s)	864
MseI	TTAA	3 cut(s)	672, 678, 684
Msp20I	TGGCCA	1 cut(s)	864
MspA1I	CMGCKG	2 cut(s)	264, 580
MspR9I	CCNGG	6 cut(s)	148, 375, 401, 415, 458, 538
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	148, 458
NaeI	GCCGGC	2 cut(s)	66, 633
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	4 cut(s)	375, 401, 415, 538
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
NgoMIV	GCCGGC	2 cut(s)	64, 631
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	6 cut(s)	133, 164, 408, 516, 535, 630
NmeAIII	GCCGAG	2 cut(s)	71, 498
NspV	TTCGAA	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	703
PdiI	GCCGGC	2 cut(s)	66, 633
PfeI	GAWTC	2 cut(s)	568, 622
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	2 cut(s)	146, 456
Ple19I	CGATCG	2 cut(s)	289, 300
PleI	GAGTC	3 cut(s)	83, 439, 517
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	2 cut(s)	124, 157
PmlI	CACGTG	2 cut(s)	124, 157
PpsI	GAGTC	3 cut(s)	83, 439, 517
Ppu21I	YACGTR	2 cut(s)	124, 157
PpuMI	RGGWCCY	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	146, 456
PspCI	CACGTG	2 cut(s)	124, 157
PspGI	CCWGG	2 cut(s)	146, 456
PspN4I	GGNNCC	6 cut(s)	133, 164, 408, 516, 535, 630
PspPI	GGNCC	4 cut(s)	162, 226, 406, 460
PspPPI	RGGWCCY	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	3 cut(s)	168, 355, 533
PsyI	GACNNNGTC	1 cut(s)	194
PvuI	CGATCG	2 cut(s)	289, 300
PvuII	CAGCTG	2 cut(s)	264, 580
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	672, 678, 684
Sau3AI	GATC	6 cut(s)	168, 286, 297, 355, 465, 533
Sau96I	GGNCC	4 cut(s)	162, 226, 406, 460
SchI	GAGTC	3 cut(s)	83, 440, 518
ScrFI	CCNGG	6 cut(s)	148, 375, 401, 415, 458, 538
SduI	GDGCHC	4 cut(s)	75, 129, 212, 336
SfcI	CTRYAG	1 cut(s)	52
SfiI	GGCCNNNNNGGCC	1 cut(s)	92
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	4 cut(s)	162, 226, 406, 460
SlaI	CTCGAG	1 cut(s)	329
SmlI	CTYRAG	3 cut(s)	329, 593, 873
SmoI	CTYRAG	3 cut(s)	329, 593, 873
SspDI	GGCGCC	1 cut(s)	131
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	6 cut(s)	146, 373, 399, 413, 456, 536
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	3 cut(s)	126, 159, 800
TaqI	TCGA	4 cut(s)	11, 300, 330, 606
TaqII	GACCGA	1 cut(s)	846
TauI	GCSGC	7 cut(s)	281, 328, 341, 396, 615, 638, 641
TfiI	GAWTC	2 cut(s)	568, 622
Tru1I	TTAA	3 cut(s)	672, 678, 684
Tru9I	TTAA	3 cut(s)	672, 678, 684
TspGWI	ACGGA	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	125
VpaK11BI	GGWCC	4 cut(s)	162, 226, 406, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.