Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009189

Physical Location & Seq

Genomic Coordinates Forward (+)

40107591 .. 40107884

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAAGACGATTTGCTATTCTCGATGCTGACGGTGGAGGAGACGCTCATGTTCACCGCCGAGTTCCGCCTCCCACGGACGCTCTCAAAATCCAAGAAGAAAATGTGGGTCCAGGCGCTGATCGACCAGCTAGGTCTCCGCAACGTCACGAAAACCATCATCGACGATGACGGCCACCGCGGCGTCTCCGGCGGAGAGCGCCGCCGCGTCTCGATCAGAATCGACATCGTCCAAGACCAGATCATCCTCTTCCTCGAAGATCGAGCTAACCTCCGGCCTCGACTCCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

97

Amino Acids

11.29

Weight (kDa)

9.39

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	2 - 85	1.5e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28050 AT2G33500 AT2G33500
fragaria_vesca	FvH4_4g23090 FvH4_7g05191
malus_domestica	MD13G1125800.v1.1 MD16G1126400.v1.1
prunus_persica	Prupe.1G219800_v2.0.a1
pyrus_communis	pycom13g10970 pycom16g10750
rosa_chinensis	RchiOBHm_Chr4g0429371
rosa_laevigata	RLG00000007077
rosa_multiflora	Rmu_co8397147.1_g000001 Rmu_sc0003708.1_g000044
rosa_roxburghii	Rroxscaffold_5G00370980
rosa_rugosa	Rorug04G0235200 Rorug04G0235300
rosa_samantha	Rh4AG291200 Rh4BG297000 Rh4CG312500 Rh4DG293900
rosa_wichuraiana	Rw4G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 207
AciI	CCGC	8 cut(s)	57, 67, 139, 178, 180, 192, 202, 205
AcoI	YGGCCR	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	130, 266
AluI	AGCT	2 cut(s)	130, 266
Alw26I	GTCTC	4 cut(s)	35, 140, 190, 214
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	172, 275
AspLEI	GCGC	2 cut(s)	118, 201
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	109
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	4 cut(s)	35, 140, 190, 214
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	2 cut(s)	119, 202
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	3 cut(s)	181, 202, 205
BlsI	GCNGC	3 cut(s)	182, 203, 206
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BsaBI	GATNNNNATC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	74, 178
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	74, 178
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	53
Bsh1236I	CGCG	2 cut(s)	180, 207
BshFI	GGCC	2 cut(s)	174, 277
BsiSI	CCGG	2 cut(s)	189, 274
BsmAI	GTCTC	4 cut(s)	35, 140, 190, 214
BsmBI	CGTCTC	3 cut(s)	35, 190, 214
BsnI	GGCC	2 cut(s)	174, 277
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	120, 213, 240, 259
BspACI	CCGC	8 cut(s)	57, 67, 139, 178, 180, 192, 202, 205
BspANI	GGCC	2 cut(s)	174, 277
BspFNI	CGCG	2 cut(s)	180, 207
BspHI	TCATGA	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	74, 178
BssMI	GATC	4 cut(s)	120, 213, 240, 259
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	183
BstDSI	CCRYGG	2 cut(s)	74, 178
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	2 cut(s)	180, 207
BstH2I	RGCGCY	2 cut(s)	119, 202
BstHHI	GCGC	2 cut(s)	118, 201
BstKTI	GATC	4 cut(s)	123, 216, 243, 262
BstMAI	GTCTC	4 cut(s)	35, 140, 190, 214
BstMBI	GATC	4 cut(s)	120, 213, 240, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 189, 198
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	2 cut(s)	180, 207
BsuRI	GGCC	2 cut(s)	174, 277
BtgI	CCRYGG	2 cut(s)	74, 178
BtsCI	GGATG	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	118
CciI	TCATGA	1 cut(s)	290
CfoI	GCGC	2 cut(s)	118, 201
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	181
CseI	GACGC	4 cut(s)	52, 88, 172, 196
CviAII	CATG	2 cut(s)	49, 291
CviJI	RGCY	4 cut(s)	130, 174, 266, 277
CviKI_1	RGCY	4 cut(s)	130, 174, 266, 277
DpnI	GATC	4 cut(s)	122, 215, 242, 261
DpnII	GATC	4 cut(s)	120, 213, 240, 259
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	2 cut(s)	56, 207
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	111
Esp3I	CGTCTC	3 cut(s)	35, 190, 214
FaeI	CATG	2 cut(s)	52, 294
FaiI	YATR	2 cut(s)	50, 292
FatI	CATG	2 cut(s)	48, 290
Fnu4HI	GCNGC	3 cut(s)	181, 202, 205
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	181, 202, 205
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	2 cut(s)	117, 200
GluI	GCNGC	3 cut(s)	181, 202, 205
HaeII	RGCGCY	2 cut(s)	119, 202
HaeIII	GGCC	2 cut(s)	174, 277
HapII	CCGG	2 cut(s)	189, 274
HgaI	GACGC	4 cut(s)	52, 88, 172, 196
HhaI	GCGC	2 cut(s)	118, 201
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	52, 294
Hin6I	GCGC	2 cut(s)	116, 199
HinP1I	GCGC	2 cut(s)	116, 199
HinfI	GANTC	2 cut(s)	219, 282
HpaII	CCGG	2 cut(s)	189, 274
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	4 cut(s)	22, 148, 211, 291
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 189, 198
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	52, 294
HspAI	GCGC	2 cut(s)	116, 199
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	120, 213, 240, 259
LpnPI	CCDG	6 cut(s)	98, 125, 140, 202, 251, 287
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	122, 215, 242, 261
MboI	GATC	4 cut(s)	120, 213, 240, 259
MboII	GAAGA	3 cut(s)	109, 241, 269
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	31, 80, 257, 263, 281, 288
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	189, 274
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	180, 207
MwoI	GCNNNNNNNGC	3 cut(s)	180, 189, 198
NdeII	GATC	4 cut(s)	120, 213, 240, 259
NlaIII	CATG	2 cut(s)	52, 294
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	219
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	182, 203, 206
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	227
SacII	CCGCGG	1 cut(s)	181
SatI	GCNGC	3 cut(s)	181, 202, 205
Sau3AI	GATC	4 cut(s)	120, 213, 240, 259
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	5 cut(s)	132, 136, 147, 268, 273
SfaNI	GCATC	1 cut(s)	15
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	8 cut(s)	57, 67, 139, 178, 180, 192, 202, 205
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	8 cut(s)	23, 123, 162, 212, 222, 255, 262, 280
TauI	GCSGC	3 cut(s)	183, 204, 207
TfiI	GAWTC	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	109
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.