Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009189

Physical Location & Seq

Genomic Coordinates Forward (+)

40100100 .. 40104370

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCGCTCTTCCTCCTCCTCCTCCTTCACCGCCACGTCATCCTCCTCTCCGTCCCCGAAACCCAAATCCTCAAACCCTAACCACCACTCCAATGGCGGCAGCAACCCGAATTGCACGCTCCTCTGCAAGCACTCGCCGTCGGCGACCCTCGACCTCCTAATCCTCATCCTGGTCCTCTTCTCCGGCACGTTCCTCATCACCTCCTACTTCGCCTACATCTTCAACTCCCTCTCCCTCCTCCTGTCCCACTCCGCCCCGCACCTCCAGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACCGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGCTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGGTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTTCGGGCGCGGTGTGGGTGCCCCGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGAATAAAAAAAAAAATTTGTTTGACTGTCGTAGTGTGCTGCCGCATCCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0010363 GO:0010941 GO:0016020 GO:0031347 GO:0031348 GO:0034051 GO:0043067 GO:0043069 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

zf-LITAF-like

Protein Analysis

229

Amino Acids

25.45

Weight (kDa)

9.64

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28050 AT2G33500 AT2G33500
fragaria_vesca	FvH4_4g23090 FvH4_7g05191
malus_domestica	MD13G1125800.v1.1 MD16G1126400.v1.1
prunus_persica	Prupe.1G219800_v2.0.a1
pyrus_communis	pycom13g10970 pycom16g10750
rosa_chinensis	RchiOBHm_Chr4g0429371
rosa_laevigata	RLG00000007077
rosa_multiflora	Rmu_co8397147.1_g000001 Rmu_sc0003708.1_g000044
rosa_roxburghii	Rroxscaffold_5G00370980
rosa_rugosa	Rorug04G0235200 Rorug04G0235300
rosa_samantha	Rh4AG291200 Rh4BG297000 Rh4CG312500 Rh4DG293900
rosa_wichuraiana	Rw4G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	344, 579
AccII	CGCG	2 cut(s)	355, 571
AccIII	TCCGGA	1 cut(s)	522
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	401, 649
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	6 cut(s)	169, 473, 522, 529, 542, 617
AgsI	TTSAA	3 cut(s)	223, 388, 599
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	168, 467
AluBI	AGCT	4 cut(s)	415, 463, 520, 595
AluI	AGCT	4 cut(s)	415, 463, 520, 595
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	271
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	3 cut(s)	393, 544, 619
ApeKI	GCWGC	7 cut(s)	99, 339, 375, 412, 415, 463, 673
ApoI	RAATTY	2 cut(s)	401, 649
AspLEI	GCGC	4 cut(s)	6, 347, 357, 571
AspS9I	GGNCC	3 cut(s)	172, 513, 608
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	19, 190
AvaII	GGWCC	3 cut(s)	172, 513, 608
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	344, 579
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	7 cut(s)	111, 326, 362, 402, 424, 450, 660
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	4 cut(s)	121, 388, 531, 536
BciT130I	CCWGG	2 cut(s)	170, 469
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	348
Bme1390I	CCNGG	3 cut(s)	170, 442, 469
Bme18I	GGWCC	3 cut(s)	172, 513, 608
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	172, 513, 608
BmiI	GGNNCC	5 cut(s)	346, 534, 581, 609, 610
BmrFI	CCNGG	3 cut(s)	170, 442, 469
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	289, 370, 396, 467
BsaWI	WCCGGW	2 cut(s)	510, 522
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 215, 245
Bsc4I	CCNNNNNNNGG	6 cut(s)	169, 473, 522, 529, 542, 617
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	170, 469
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	289, 370, 396, 467
BseGI	GGATG	3 cut(s)	38, 165, 679
BseLI	CCNNNNNNNGG	6 cut(s)	169, 473, 522, 529, 542, 617
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	9 cut(s)	4, 7, 10, 34, 110, 227, 278, 311, 440
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	7 cut(s)	111, 326, 362, 402, 424, 450, 660
BseYI	CCCAGC	1 cut(s)	603
Bsh1236I	CGCG	2 cut(s)	355, 571
Bsh1285I	CGRYCG	2 cut(s)	353, 367
BshFI	GGCC	3 cut(s)	395, 546, 621
BshNI	GGYRCC	2 cut(s)	344, 579
BshVI	ATCGAT	1 cut(s)	456
BsiEI	CGRYCG	2 cut(s)	353, 367
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	5 cut(s)	183, 441, 511, 523, 625
BslFI	GGGAC	3 cut(s)	37, 229, 594
BslI	CCNNNNNNNGG	6 cut(s)	169, 473, 522, 529, 542, 617
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	3 cut(s)	37, 229, 594
BsnI	GGCC	3 cut(s)	395, 546, 621
Bsp1286I	GDGCHC	2 cut(s)	522, 584
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	276, 350, 453
Bsp19I	CCATGG	1 cut(s)	396
BspANI	GGCC	3 cut(s)	395, 546, 621
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	522
BspFNI	CGCG	2 cut(s)	355, 571
BspLI	GGNNCC	5 cut(s)	346, 534, 581, 609, 610
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	13
BspT107I	GGYRCC	2 cut(s)	344, 579
BsrFI	RCCGGY	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	4 cut(s)	289, 370, 396, 467
BssMI	GATC	3 cut(s)	276, 350, 453
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	170, 469
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	4 cut(s)	13, 182, 305, 329
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	116, 128, 626
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	370, 396
BstF5I	GGATG	3 cut(s)	38, 165, 679
BstFNI	CGCG	2 cut(s)	355, 571
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	4 cut(s)	6, 347, 357, 571
BstKTI	GATC	3 cut(s)	279, 353, 456
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	276, 350, 453
BstMCI	CGRYCG	2 cut(s)	353, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 381
BstNI	CCWGG	2 cut(s)	170, 469
BstSCI	CCNGG	3 cut(s)	168, 440, 467
BstSFI	CTRYAG	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	2 cut(s)	355, 571
BstV1I	GCAGC	7 cut(s)	111, 326, 362, 402, 424, 450, 660
BstXI	CCANNNNNNTGG	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	395, 546, 621
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	2 cut(s)	370, 396
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	38, 165, 679
Cac8I	GCNNGC	3 cut(s)	116, 128, 626
CfoI	GCGC	4 cut(s)	6, 347, 357, 571
Cfr10I	RCCGGY	1 cut(s)	624
Cfr13I	GGNCC	3 cut(s)	172, 513, 608
ClaI	ATCGAT	1 cut(s)	456
CpoI	CGGWCCG	1 cut(s)	513
CspI	CGGWCCG	1 cut(s)	513
CviAII	CATG	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	447
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	3 cut(s)	278, 352, 455
DpnII	GATC	3 cut(s)	276, 350, 453
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	4 cut(s)	13, 182, 305, 329
EarI	CTCTTC	4 cut(s)	13, 182, 305, 329
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	172, 513, 608
Eco53kI	GAGCTC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	168, 467
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	522
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	400
FaiI	YATR	2 cut(s)	398, 630
FaqI	GGGAC	3 cut(s)	37, 229, 594
FatI	CATG	1 cut(s)	396
FauI	CCCGC	2 cut(s)	264, 470
FokI	GGATG	3 cut(s)	25, 152, 666
FriOI	GRGCYC	1 cut(s)	522
GlaI	GCGC	4 cut(s)	5, 346, 356, 570
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	395, 546, 621
HapII	CCGG	5 cut(s)	183, 441, 511, 523, 625
HhaI	GCGC	4 cut(s)	6, 347, 357, 571
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	4 cut(s)	4, 345, 355, 569
HinP1I	GCGC	4 cut(s)	4, 345, 355, 569
HindIII	AAGCTT	1 cut(s)	593
HpaII	CCGG	5 cut(s)	183, 441, 511, 523, 625
HphI	GGTGA	2 cut(s)	19, 190
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	4 cut(s)	274, 436, 494, 523
Hpy99I	CGWCG	4 cut(s)	142, 314, 332, 590
HpyAV	CCTTC	4 cut(s)	34, 385, 466, 593
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	2 cut(s)	35, 188
HpyCH4V	TGCA	5 cut(s)	114, 126, 378, 412, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 381
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	35, 188
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	4 cut(s)	4, 345, 355, 569
KasI	GGCGCC	1 cut(s)	344
KflI	GGGWCCC	1 cut(s)	608
Kpn2I	TCCGGA	1 cut(s)	522
KroI	GCCGGC	1 cut(s)	624
KroNI	GCCGGC	1 cut(s)	626
Kzo9I	GATC	3 cut(s)	276, 350, 453
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	123, 525, 538
Lsp1109I	GCAGC	7 cut(s)	111, 326, 362, 402, 424, 450, 660
MaeII	ACGT	2 cut(s)	35, 188
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	3 cut(s)	278, 352, 455
MboI	GATC	3 cut(s)	276, 350, 453
MboII	GAAGA	9 cut(s)	169, 211, 292, 295, 298, 316, 400, 538, 646
MhlI	GDGCHC	2 cut(s)	522, 584
MluCI	AATT	3 cut(s)	109, 401, 649
Mly113I	GGCGCC	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	522
MroNI	GCCGGC	1 cut(s)	624
MseI	TTAA	1 cut(s)	688
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	5 cut(s)	183, 441, 511, 523, 625
MspR9I	CCNGG	3 cut(s)	170, 442, 469
MvaI	CCWGG	2 cut(s)	170, 469
MvnI	CGCG	2 cut(s)	355, 571
MwoI	GCNNNNNNNGC	2 cut(s)	375, 381
NaeI	GCCGGC	1 cut(s)	626
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	276, 350, 453
NgoMIV	GCCGGC	1 cut(s)	624
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	5 cut(s)	346, 534, 581, 609, 610
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	442
Ple19I	CGATCG	1 cut(s)	353
PluTI	GGCGCC	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	2 cut(s)	168, 467
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	168, 467
PspN4I	GGNNCC	5 cut(s)	346, 534, 581, 609, 610
PspPI	GGNCC	3 cut(s)	172, 513, 608
PspPPI	RGGWCCY	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	420
PsyI	GACNNNGTC	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	90
Rsr2I	CGGWCCG	1 cut(s)	513
RsrII	CGGWCCG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	688
Sau3AI	GATC	3 cut(s)	276, 350, 453
Sau96I	GGNCC	3 cut(s)	172, 513, 608
ScrFI	CCNGG	3 cut(s)	170, 442, 469
SduI	GDGCHC	2 cut(s)	522, 584
SfcI	CTRYAG	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	346
SinI	GGWCC	3 cut(s)	172, 513, 608
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	109, 401, 649
SspDI	GGCGCC	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	168, 440, 467
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	2 cut(s)	38, 191
TaqI	TCGA	4 cut(s)	150, 330, 405, 456
TasI	AATT	3 cut(s)	109, 401, 649
TauI	GCSGC	5 cut(s)	99, 317, 345, 624, 679
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	7 cut(s)	99, 339, 375, 412, 415, 463, 673
Tsp45I	GTSAC	1 cut(s)	482
TspGWI	ACGGA	2 cut(s)	39, 437
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	3 cut(s)	172, 513, 608
XapI	RAATTY	2 cut(s)	401, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.