Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011706

Physical Location & Seq

Genomic Coordinates Forward (+)

14305001 .. 14306072

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGTATGAGAAGAAGCAAAGCGGAAGGGAAGAGGAGCTTACGAGAACTGAGTGAGGAAGAGGAAGAAGAAGAAGAAACTGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAGGTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCAAAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATGTTCGGATCTCTGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGCGCTCAGTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAAGGCGGAAAAGCACAACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009911 GO:0010228 GO:0010229 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

131

Amino Acids

15.3

Weight (kDa)

8.23

Isoelectric Point (pI)

110.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	54 - 127	6.4e-33	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33810
fragaria_vesca	FvH4_3g08880
malus_domestica	MD05G1312300.v1.1 MD10G1291800.v1.1
prunus_persica	Prupe.4G050400_v2.0.a1 Prupe.4G050400_v2.0.a1
pyrus_communis	pycom05g28830 pycom10g24400
rosa_chinensis	RchiOBHm_Chr5g0008871
rosa_laevigata	RLG00000031612
rosa_multiflora	Rmu_sc0004677.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067130 Rroxscaffold_1G00067750
rosa_rugosa	Rorug04G0439900
rosa_samantha	Rh5AG068500 Rh5BG065200 Rh5CG076400 Rh5DG064300
rosa_wichuraiana	Rw5G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccII	CGCG	2 cut(s)	182, 308
AciI	CCGC	5 cut(s)	23, 180, 182, 334, 376
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	178, 206
AgsI	TTSAA	1 cut(s)	101
AhdI	GACNNNNNGTC	1 cut(s)	221
AluBI	AGCT	4 cut(s)	39, 140, 245, 356
AluI	AGCT	4 cut(s)	39, 140, 245, 356
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	295
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	296
BmeRI	GACNNNNNGTC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	41, 325
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	49, 237
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	182, 308
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	258
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	5 cut(s)	23, 180, 182, 334, 376
BspCNI	CTCAG	2 cut(s)	42, 324
BspFNI	CGCG	2 cut(s)	182, 308
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	3 cut(s)	26, 54, 102
BstDEI	CTNAG	3 cut(s)	50, 311, 352
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	182, 308
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 348
BstUI	CGCG	2 cut(s)	182, 308
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	310
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	177, 205
CviAII	CATG	2 cut(s)	236, 251
CviJI	RGCY	7 cut(s)	39, 113, 140, 197, 245, 329, 356
CviKI_1	RGCY	7 cut(s)	39, 113, 140, 197, 245, 329, 356
CviQI	GTAC	2 cut(s)	177, 205
DdeI	CTNAG	3 cut(s)	50, 311, 352
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	26, 54, 102
Eam1105I	GACNNNNNGTC	1 cut(s)	221
EarI	CTCTTC	3 cut(s)	26, 54, 102
EciI	GGCGGA	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	2 cut(s)	239, 254
FaiI	YATR	4 cut(s)	8, 188, 237, 252
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	2 cut(s)	235, 250
Fnu4HI	GCNGC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	295
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	295
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	239, 254
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	20, 366
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	294, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 348
HpyF3I	CTNAG	3 cut(s)	50, 311, 352
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	239, 254
HspAI	GCGC	1 cut(s)	308
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	36, 250
LpnPI	CCDG	6 cut(s)	149, 242, 249, 283, 328, 342
Lsp1109I	GCAGC	1 cut(s)	306
MaeII	ACGT	1 cut(s)	277
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MflI	RGATCY	1 cut(s)	258
MnlI	CCTC	5 cut(s)	27, 49, 55, 103, 258
MspA1I	CMGCKG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	182, 308
MwoI	GCNNNNNNNGC	2 cut(s)	291, 348
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	239, 254
PkrI	GCNGC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	2 cut(s)	178, 206
RsaNI	GTAC	2 cut(s)	177, 205
SacII	CCGCGG	1 cut(s)	183
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	258
SetI	ASST	8 cut(s)	41, 136, 142, 168, 247, 280, 302, 358
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SsiI	CCGC	5 cut(s)	23, 180, 182, 334, 376
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	102, 224, 339
TspRI	CASTG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.