FvH4_3g08880

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011706
Physical Location & Seq
Reverse (-)
5174508 .. 5176360
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08880.t1

Sequence Viewer

Length: 639 bp
ATGAAGACAAGGGAACATATGGAACTTGTGGTCCTCACCCATAATTCTCCCTCTTTTTCCCCTTCTTGTTGTATCTCAAGGTTCTTTAATTCCATTTCTTCTTTGACTTGTACTCCATCTTTCTCCTATCTATTGCTCCTTCTCCTCTTTTCAATTCTCTGCAAAATGGAACCAAACAAAGCTCAAGGAAAGAGGAGCTTGAACTTGGACATCGAGGAGGAGGAAGAGGAAGAAGAAGCGGACGAGGACGAAGACCATACGAGTAGGCCTTCGGTACTAGTGCATGGAGAAGATGATAGGAGGAAGAGAGTGATGGTGATGAATAGTGCTAGCGCTACTAGTCCGAGCAAGAAAGGATCCGCTGCAGGGGGGTCTATGACTACAAGGCCGAGCTGCCAAGCGCAGAGTTGCAATGCAGACTTGAGTGATGCAAAGCAGTACTACCGACGACACAAGGTCTGCGATTTTCATTCCAAGGCTCCGGTAGTGGTCATCGGTGGCCTCCGACAGCGCTTTTGTCAGCAATGTAGCAGGTTCCATGACCTGTCTGAGTTCGATGAAAACAAACGAAGTTGTCGCAGACGTTTAGCTGGGCACAACGAACGGCGCCGGAAAAACTCCTCCGATTATCCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

213

Amino Acids

24.11

Weight (kDa)

8.33

Isoelectric Point (pI)

91.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 132 - 205 8.9e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011706)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33810
fragaria_vesca FvH4_3g08880
malus_domestica MD05G1312300.v1.1 MD10G1291800.v1.1
prunus_persica Prupe.4G050400_v2.0.a1 Prupe.4G050400_v2.0.a1
pyrus_communis pycom05g28830 pycom10g24400
rosa_chinensis RchiOBHm_Chr5g0008871
rosa_laevigata RLG00000031612
rosa_multiflora Rmu_sc0004677.1_g000008
rosa_roxburghii Rroxscaffold_1G00067130 Rroxscaffold_1G00067750
rosa_rugosa Rorug04G0439900
rosa_samantha Rh5AG068500 Rh5BG065200 Rh5CG076400 Rh5DG064300
rosa_wichuraiana Rw5G006410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 606
AciI CCGC 2 cut(s) 239, 360
AclWI GGATC 2 cut(s) 351, 364
AcyI GRCGYC 1 cut(s) 607
AfaI GTAC 3 cut(s) 112, 276, 440
AfeI AGCGCT 2 cut(s) 334, 512
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 2 cut(s) 153, 202
AhdI GACNNNNNGTC 1 cut(s) 455
AhlI ACTAGT 2 cut(s) 277, 338
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 4 cut(s) 182, 198, 393, 590
AluI AGCT 4 cut(s) 182, 198, 393, 590
AlwI GGATC 2 cut(s) 351, 364
Aor51HI AGCGCT 2 cut(s) 334, 512
AoxI GGCC 3 cut(s) 266, 386, 499
ApeKI GCWGC 2 cut(s) 362, 393
ArsI GACNNNNNNTTYG 2 cut(s) 498, 530
AspLEI GCGC 4 cut(s) 335, 403, 513, 609
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 28, 328
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 597
BamHI GGATCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 11, 258
BbvI GCAGC 2 cut(s) 349, 380
BccI CCATC 2 cut(s) 124, 307
BceAI ACGGC 1 cut(s) 620
BcuI ACTAGT 2 cut(s) 277, 338
BfaI CTAG 3 cut(s) 278, 330, 339
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 3 cut(s) 336, 514, 610
BfuAI ACCTGC 1 cut(s) 522
BisI GCNGC 2 cut(s) 363, 394
BlsI GCNGC 2 cut(s) 364, 395
BmcAI AGTACT 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 31
BmeRI GACNNNNNGTC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 5 cut(s) 171, 358, 480, 536, 608
BmsI GCATC 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 2 cut(s) 11, 258
BpuEI CTTGAG 3 cut(s) 61, 168, 442
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse3DI GCAATG 2 cut(s) 418, 530
BseDI CCNNGG 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 418, 530
BseMII CTCAG 1 cut(s) 540
BseRI GAGGAG 5 cut(s) 134, 208, 230, 233, 610
BseSI GKGCMC 1 cut(s) 597
BseXI GCAGC 2 cut(s) 349, 380
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 3 cut(s) 268, 388, 501
BshNI GGYRCC 1 cut(s) 606
BsiSI CCGG 2 cut(s) 482, 610
BslI CCNNNNNNNGG 1 cut(s) 366
BsnI GGCC 3 cut(s) 268, 388, 501
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 2 cut(s) 239, 360
BspANI GGCC 3 cut(s) 268, 388, 501
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 5 cut(s) 171, 358, 480, 536, 608
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 522
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 2 cut(s) 351, 364
BspT107I GGYRCC 1 cut(s) 606
BsrDI GCAATG 2 cut(s) 418, 530
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 1 cut(s) 356
BssNI GRCGYC 1 cut(s) 607
BssT1I CCWWGG 1 cut(s) 474
Bst6I CTCTTC 2 cut(s) 219, 299
BstACI GRCGYC 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 549
BstH2I RGCGCY 3 cut(s) 336, 514, 610
BstHHI GCGC 4 cut(s) 335, 403, 513, 609
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 349, 380
BstV2I GAAGAC 2 cut(s) 11, 258
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 3 cut(s) 268, 388, 501
BveI ACCTGC 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 331
CfoI GCGC 4 cut(s) 335, 403, 513, 609
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 111, 275, 439
CviAII CATG 2 cut(s) 284, 539
CviJI RGCY 8 cut(s) 182, 198, 268, 388, 393, 479, 501, 590
CviKI_1 RGCY 8 cut(s) 182, 198, 268, 388, 393, 479, 501, 590
CviQI GTAC 3 cut(s) 111, 275, 439
DdeI CTNAG 1 cut(s) 549
DinI GGCGCC 1 cut(s) 608
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
DriI GACNNNNNGTC 1 cut(s) 455
Eam1104I CTCTTC 2 cut(s) 219, 299
Eam1105I GACNNNNNGTC 1 cut(s) 455
EarI CTCTTC 2 cut(s) 219, 299
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 31
Eco47III AGCGCT 2 cut(s) 334, 512
EcoT14I CCWWGG 1 cut(s) 474
EgeI GGCGCC 1 cut(s) 608
EheI GGCGCC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 2 cut(s) 287, 542
FaiI YATR 7 cut(s) 18, 20, 42, 258, 285, 377, 540
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 2 cut(s) 283, 538
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 363, 394
Fsp4HI GCNGC 2 cut(s) 363, 394
FspBI CTAG 3 cut(s) 278, 330, 339
GlaI GCGC 4 cut(s) 334, 402, 512, 608
GluI GCNGC 2 cut(s) 363, 394
GsaI CCCAGC 1 cut(s) 594
HaeII RGCGCY 3 cut(s) 336, 514, 610
HaeIII GGCC 3 cut(s) 268, 388, 501
HapII CCGG 2 cut(s) 482, 610
HhaI GCGC 4 cut(s) 335, 403, 513, 609
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 2 cut(s) 287, 542
Hin6I GCGC 4 cut(s) 333, 401, 511, 607
HinP1I GCGC 4 cut(s) 333, 401, 511, 607
HpaII CCGG 2 cut(s) 482, 610
HphI GGTGA 2 cut(s) 28, 328
Hpy188I TCNGA 4 cut(s) 345, 506, 550, 625
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 3 cut(s) 72, 149, 279
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 162, 283, 365, 411, 416, 431
HpyF3I CTNAG 1 cut(s) 549
HpySE526I ACGT 1 cut(s) 583
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 2 cut(s) 287, 542
HspAI GCGC 4 cut(s) 333, 401, 511, 607
KasI GGCGCC 1 cut(s) 606
Kzo9I GATC 1 cut(s) 356
LmnI GCTCC 3 cut(s) 141, 195, 484
LpnPI CCDG 6 cut(s) 351, 495, 517, 557, 576, 623
Lsp1109I GCAGC 2 cut(s) 349, 380
LweI GCATC 1 cut(s) 418
MaeI CTAG 3 cut(s) 278, 330, 339
MaeII ACGT 1 cut(s) 583
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 8 cut(s) 16, 90, 236, 242, 245, 263, 302, 316
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 3 cut(s) 43, 88, 153
Mly113I GGCGCC 1 cut(s) 607
MmeI TCCRAC 1 cut(s) 529
MseI TTAA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 482, 610
NarI GGCGCC 1 cut(s) 607
NdeI CATATG 1 cut(s) 18
NdeII GATC 1 cut(s) 356
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 2 cut(s) 287, 542
NlaIV GGNNCC 5 cut(s) 171, 358, 480, 536, 608
NmeAIII GCCGAG 1 cut(s) 414
PceI AGGCCT 1 cut(s) 268
PkrI GCNGC 2 cut(s) 364, 395
PluTI GGCGCC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 590
PspN4I GGNNCC 5 cut(s) 171, 358, 480, 536, 608
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 3 cut(s) 112, 276, 440
RsaNI GTAC 3 cut(s) 111, 275, 439
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 363, 394
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 440
SduI GDGCHC 1 cut(s) 597
SetI ASST 9 cut(s) 83, 184, 200, 395, 459, 536, 546, 586, 592
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 608
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 3 cut(s) 76, 183, 421
SmoI CTYRAG 3 cut(s) 76, 183, 421
SpeI ACTAGT 2 cut(s) 277, 338
Sse9I AATT 3 cut(s) 43, 88, 153
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 2 cut(s) 239, 360
SspDI GGCGCC 1 cut(s) 606
SspMI CTAG 3 cut(s) 278, 330, 339
StuI AGGCCT 1 cut(s) 268
StyI CCWWGG 1 cut(s) 474
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 213, 555
TasI AATT 3 cut(s) 43, 88, 153
TatI WGTACW 2 cut(s) 110, 438
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 2 cut(s) 362, 393
TspDTI ATGAA 4 cut(s) 17, 335, 458, 573
VpaK11BI GGWCC 1 cut(s) 31
XspI CTAG 3 cut(s) 278, 330, 339
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.