pycom05g28830

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011706
Physical Location & Seq
Reverse (-)
29413919 .. 29414302
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28830.1

Sequence Viewer

Length: 384 bp
ATGGAATCAGGCAGAGCTCATGGAAAGAGTACCTTGGTGAAGTCCGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGAGTAGGAGTGGGACACCATCAATAGTGGATGGTGAGGATGAGAGGAGAGATACAGTGATGATGATGAATAGTACTGCTCCTTCTCCTACAGGGAGAAGATCTGGTGCAGGAGGGTCTACAGCAGGGCCATGTTGTAAGGTAGATAGTTGCAATGCTGATTTGAGCGATTTAAAGCAATACTACCGCCGCCACAAGGTCTGTGATGTTCATGCCAAGGCTCCGGCGGTGCTCATGGGTGGATTCCGGCAGCGTTTTTGCCAGCAGTGTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

4.63

Isoelectric Point (pI)

102.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 81 - 127 5.2e-18 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011706)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33810
fragaria_vesca FvH4_3g08880
malus_domestica MD05G1312300.v1.1 MD10G1291800.v1.1
prunus_persica Prupe.4G050400_v2.0.a1 Prupe.4G050400_v2.0.a1
pyrus_communis pycom05g28830 pycom10g24400
rosa_chinensis RchiOBHm_Chr5g0008871
rosa_laevigata RLG00000031612
rosa_multiflora Rmu_sc0004677.1_g000008
rosa_roxburghii Rroxscaffold_1G00067130 Rroxscaffold_1G00067750
rosa_rugosa Rorug04G0439900
rosa_samantha Rh5AG068500 Rh5BG065200 Rh5CG076400 Rh5DG064300
rosa_wichuraiana Rw5G006410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 224
AciI CCGC 3 cut(s) 292, 295, 332
AfaI GTAC 2 cut(s) 31, 181
AfiI CCNNNNNNNGG 1 cut(s) 301
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 2 cut(s) 19, 339
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 49, 152
BanII GRGCYC 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
Bbv12I GWGCWC 2 cut(s) 19, 339
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 131, 133
BfmI CTRYAG 2 cut(s) 195, 225
BfuAI ACCTGC 1 cut(s) 369
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 295, 356
BlsI GCNGC 2 cut(s) 296, 357
BmcAI AGTACT 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 33, 45, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 33, 45, 321
BseGI GGATG 2 cut(s) 142, 151
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 265
BseRI GAGGAG 9 cut(s) 68, 71, 74, 77, 92, 95, 98, 101, 166
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 19, 339
BsiSI CCGG 2 cut(s) 329, 352
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 19, 339
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 3 cut(s) 292, 295, 332
BspANI GGCC 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 3 cut(s) 33, 45, 321
BssMI GATC 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 33, 321
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 4 cut(s) 45, 63, 69, 99
BstC8I GCNNGC 1 cut(s) 368
BstF5I GGATG 2 cut(s) 142, 151
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstSFI CTRYAG 2 cut(s) 195, 225
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 142, 151
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 168, 377
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 30, 180
CviAII CATG 4 cut(s) 20, 237, 317, 340
CviJI RGCY 3 cut(s) 17, 235, 326
CviKI_1 RGCY 3 cut(s) 17, 235, 326
CviQI GTAC 2 cut(s) 30, 180
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
DraI TTTAAA 1 cut(s) 279
Eam1104I CTCTTC 4 cut(s) 45, 63, 69, 99
EarI CTCTTC 4 cut(s) 45, 63, 69, 99
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 33, 321
Eco24I GRGCYC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoT14I CCWWGG 2 cut(s) 33, 321
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 33, 321
FaeI CATG 4 cut(s) 23, 240, 320, 343
FaiI YATR 4 cut(s) 21, 238, 318, 341
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 133
FatI CATG 4 cut(s) 19, 236, 316, 339
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 295, 356
FokI GGATG 2 cut(s) 149, 158
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 295, 356
GluI GCNGC 2 cut(s) 295, 356
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 329, 352
Hin1II CATG 4 cut(s) 23, 240, 320, 343
HinfI GANTC 2 cut(s) 5, 348
HpaII CCGG 2 cut(s) 329, 352
HphI GGTGA 2 cut(s) 49, 152
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 215, 258
Hsp92II CATG 4 cut(s) 23, 240, 320, 343
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 190, 331
LpnPI CCDG 8 cut(s) 183, 195, 201, 216, 342, 364, 365, 380
Lsp1109I GCAGC 1 cut(s) 367
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 9 cut(s) 62, 80, 86, 104, 107, 110, 113, 116, 216
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 19, 339
MseI TTAA 1 cut(s) 278
MspI CCGG 2 cut(s) 329, 352
NdeII GATC 1 cut(s) 206
NlaIII CATG 4 cut(s) 23, 240, 320, 343
NlaIV GGNNCC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 5, 348
PkrI GCNGC 2 cut(s) 296, 357
Psp124BI GAGCTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 2 cut(s) 31, 181
RsaNI GTAC 2 cut(s) 30, 180
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 295, 356
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 181
SduI GDGCHC 2 cut(s) 19, 339
SetI ASST 5 cut(s) 19, 35, 249, 306, 383
SfcI CTRYAG 2 cut(s) 195, 225
SsiI CCGC 3 cut(s) 292, 295, 332
SstI GAGCTC 1 cut(s) 19
StyI CCWWGG 2 cut(s) 33, 321
TaaI ACNGT 1 cut(s) 163
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 5, 348
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 168, 377
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 188, 305
TspRI CASTG 2 cut(s) 168, 377
XmiI GTMKAC 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.