Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011706

Physical Location & Seq

Genomic Coordinates Forward (+)

2410899 .. 2412783

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAATCAAACAGAGCTCATGGGAAGAGGAGCTTGAACTACAAGATGGAGGAAGAGGAGGAGGAGGAGGAGGATGAAGAAGAAGAGCAGGAGGAAGAGGAGGATGATGAAGATACTAACAGATCATCACTAGTGTACGGTGAGGATGACAGGAGGAAAAGAGTGTTGACGGTGAATAGTGCAACTTCAACTCCTAACAAGAGAGGATCTGGTGCAGGAGGGTCTATGGCAAGGCCATCTTGTCAAGCAGATGATTGCAATGCTGACTTGAGTGATGCAAAGCAATACTATCGCCGCCATAAGGTCTGCGGTGTTCATGCCAAGGCTCCGGCGGTGCGTGTGGGTGGAGTTCAACAGCGCTTCTGCCAGCAATGTAGCAGTGCAGAGAAAATAGCTAAAGAAAAAGAGAAAAACAAGATGAAGGGGAGAAAACCATTTACCCCAAAAAAGAAAAAGAGAGAAAGAAGAAGAAGAAGAAGAAAAAGAAGTGGCTTAATTACCATATATTGTGACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

173

Amino Acids

19.82

Weight (kDa)

8.98

Isoelectric Point (pI)

98.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33810
fragaria_vesca	FvH4_3g08880
malus_domestica	MD05G1312300.v1.1 MD10G1291800.v1.1
prunus_persica	Prupe.4G050400_v2.0.a1 Prupe.4G050400_v2.0.a1
pyrus_communis	pycom05g28830 pycom10g24400
rosa_chinensis	RchiOBHm_Chr5g0008871
rosa_laevigata	RLG00000031612
rosa_multiflora	Rmu_sc0004677.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067130 Rroxscaffold_1G00067750
rosa_rugosa	Rorug04G0439900
rosa_samantha	Rh5AG068500 Rh5BG065200 Rh5CG076400 Rh5DG064300
rosa_wichuraiana	Rw5G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	295, 309, 332
AclWI	GGATC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	137
AfeI	AGCGCT	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	37, 189, 353
AhlI	ACTAGT	1 cut(s)	130
AluBI	AGCT	3 cut(s)	17, 33, 395
AluI	AGCT	3 cut(s)	17, 33, 395
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	152, 184
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	2 cut(s)	40, 244
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse3DI	GCAATG	2 cut(s)	265, 377
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	79, 109, 151
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	2 cut(s)	265, 377
BseRI	GAGGAG	7 cut(s)	43, 71, 74, 77, 80, 83, 113
BsgI	GTGCAG	2 cut(s)	234, 402
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	122, 206
BspACI	CCGC	3 cut(s)	295, 309, 332
BspANI	GGCC	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	265, 377
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	122, 206
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	140, 172
Bst6I	CTCTTC	4 cut(s)	20, 48, 78, 90
BstC8I	GCNNGC	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	79, 109, 151
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	125, 209
BstMBI	GATC	2 cut(s)	122, 206
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	79, 109, 151
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	20, 317
CviJI	RGCY	6 cut(s)	17, 33, 235, 326, 395, 492
CviKI_1	RGCY	6 cut(s)	17, 33, 235, 326, 395, 492
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	2 cut(s)	124, 208
DpnII	GATC	2 cut(s)	122, 206
Eam1104I	CTCTTC	4 cut(s)	20, 48, 78, 90
EarI	CTCTTC	4 cut(s)	20, 48, 78, 90
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	19
Eco47III	AGCGCT	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	23, 320
FaiI	YATR	7 cut(s)	21, 227, 300, 318, 503, 505, 517
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 223, 255
FatI	CATG	2 cut(s)	19, 316
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	3 cut(s)	86, 116, 158
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	23, 320
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	5, 512
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	2 cut(s)	152, 184
Hpy166II	GTNNAC	2 cut(s)	136, 168
Hpy8I	GTNNAC	2 cut(s)	136, 168
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	140, 172
HpyCH4V	TGCA	5 cut(s)	182, 215, 258, 278, 383
Hsp92II	CATG	2 cut(s)	23, 320
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	122, 206
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	30, 331
LpnPI	CCDG	6 cut(s)	74, 136, 195, 201, 342, 380
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	124, 208
MboI	GATC	2 cut(s)	122, 206
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	494
MspI	CCGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	122, 206
NlaIII	CATG	2 cut(s)	23, 320
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	2 cut(s)	122, 206
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	4 cut(s)	19, 35, 306, 397
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	3 cut(s)	295, 309, 332
SspMI	CTAG	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	140, 172
TasI	AATT	1 cut(s)	495
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	4 cut(s)	90, 123, 305, 434
TspRI	CASTG	1 cut(s)	385
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.